Cla97C05G086780 (gene) Watermelon (97103) v2

NameCla97C05G086780
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionRING zinc finger protein, putative
LocationCla97Chr05 : 5068598 .. 5069026 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGGGGTTTGGCGTTTTCCCTCTCGGTAGCTGCTTCGATGGATGCCGAGACCACGCTCAAGCGTCAGGATTCGGCACTCGAATATGGAACTTGAGCGACAGGCCGGTGGAGCTGCAGATAAGGGTGGGATCAATATTGAAAAAAGTGCATAGTTTGAAGCCAGGATGCTCAAAGAGGTTGAAATGTAAGAGCATTTACAAAGCATACATGCCAGGAAGGAGTATGAAGAGCTTGCTTTATTATTATGATGAAGCTTGCCAACCTTATGTTTGGATACATGAAAGTGGAGGTGATTCCATGAGAATGGTGAAGCAGCAATACATCAGTCTTGAAGATCTAAGGGAGTTTTCTGAGATCAGAATCTTTAGGGATCATCAACGTGGCTGTGTATCGGTGCGCAAGAAACCGAGGCCCGATTTTTGCTGA

mRNA sequence

ATGCCGGGGTTTGGCGTTTTCCCTCTCGGTAGCTGCTTCGATGGATGCCGAGACCACGCTCAAGCGTCAGGATTCGGCACTCGAATATGGAACTTGAGCGACAGGCCGGTGGAGCTGCAGATAAGGGTGGGATCAATATTGAAAAAAGTGCATAGTTTGAAGCCAGGATGCTCAAAGAGGTTGAAATGTAAGAGCATTTACAAAGCATACATGCCAGGAAGGAGTATGAAGAGCTTGCTTTATTATTATGATGAAGCTTGCCAACCTTATGTTTGGATACATGAAAGTGGAGGTGATTCCATGAGAATGGTGAAGCAGCAATACATCAGTCTTGAAGATCTAAGGGAGTTTTCTGAGATCAGAATCTTTAGGGATCATCAACGTGGCTGTGTATCGGTGCGCAAGAAACCGAGGCCCGATTTTTGCTGA

Coding sequence (CDS)

ATGCCGGGGTTTGGCGTTTTCCCTCTCGGTAGCTGCTTCGATGGATGCCGAGACCACGCTCAAGCGTCAGGATTCGGCACTCGAATATGGAACTTGAGCGACAGGCCGGTGGAGCTGCAGATAAGGGTGGGATCAATATTGAAAAAAGTGCATAGTTTGAAGCCAGGATGCTCAAAGAGGTTGAAATGTAAGAGCATTTACAAAGCATACATGCCAGGAAGGAGTATGAAGAGCTTGCTTTATTATTATGATGAAGCTTGCCAACCTTATGTTTGGATACATGAAAGTGGAGGTGATTCCATGAGAATGGTGAAGCAGCAATACATCAGTCTTGAAGATCTAAGGGAGTTTTCTGAGATCAGAATCTTTAGGGATCATCAACGTGGCTGTGTATCGGTGCGCAAGAAACCGAGGCCCGATTTTTGCTGA

Protein sequence

MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKRLKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEIRIFRDHQRGCVSVRKKPRPDFC
BLAST of Cla97C05G086780 vs. NCBI nr
Match: XP_008438723.1 (PREDICTED: uncharacterized protein LOC103483746 [Cucumis melo])

HSP 1 Score: 304.7 bits (779), Expect = 1.7e-79
Identity = 139/142 (97.89%), Postives = 142/142 (100.00%), Query Frame = 0

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDHAQASGFGTR+WNLSDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQY+SLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120

Query: 121 RIFRDHQRGCVSVRKKPRPDFC 143
           RIFRDHQRGC+SVRKKPRPDFC
Sbjct: 121 RIFRDHQRGCISVRKKPRPDFC 142

BLAST of Cla97C05G086780 vs. NCBI nr
Match: XP_011650993.1 (PREDICTED: uncharacterized protein LOC105434839 [Cucumis sativus] >KGN57027.1 hypothetical protein Csa_3G150060 [Cucumis sativus])

HSP 1 Score: 302.0 bits (772), Expect = 1.1e-78
Identity = 139/142 (97.89%), Postives = 141/142 (99.30%), Query Frame = 0

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQY+SLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120

Query: 121 RIFRDHQRGCVSVRKKPRPDFC 143
           RIFRDHQRGC+SVRKK RPDFC
Sbjct: 121 RIFRDHQRGCISVRKKQRPDFC 142

BLAST of Cla97C05G086780 vs. NCBI nr
Match: XP_022936946.1 (uncharacterized protein LOC111443378 [Cucurbita moschata])

HSP 1 Score: 297.7 bits (761), Expect = 2.0e-77
Identity = 139/142 (97.89%), Postives = 140/142 (98.59%), Query Frame = 0

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQ+ISLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI 120

Query: 121 RIFRDHQRGCVSVRKKPRPDFC 143
           RIFRDHQRGCVSVRKKPR  FC
Sbjct: 121 RIFRDHQRGCVSVRKKPRLGFC 142

BLAST of Cla97C05G086780 vs. NCBI nr
Match: XP_023522910.1 (uncharacterized protein LOC111786960 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 297.4 bits (760), Expect = 2.7e-77
Identity = 138/142 (97.18%), Postives = 140/142 (98.59%), Query Frame = 0

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRP+ELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPIELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQ+ISLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI 120

Query: 121 RIFRDHQRGCVSVRKKPRPDFC 143
           RIFRDHQRGCVSVRKKPR  FC
Sbjct: 121 RIFRDHQRGCVSVRKKPRLGFC 142

BLAST of Cla97C05G086780 vs. NCBI nr
Match: XP_022973671.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111472255 [Cucurbita maxima])

HSP 1 Score: 294.3 bits (752), Expect = 2.3e-76
Identity = 137/142 (96.48%), Postives = 138/142 (97.18%), Query Frame = 0

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDH QASGFGTRIWNLSDRPVELQIRVG ILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHTQASGFGTRIWNLSDRPVELQIRVGXILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQ+ISLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI 120

Query: 121 RIFRDHQRGCVSVRKKPRPDFC 143
           RIFRDHQRGCVSVRKKPR  FC
Sbjct: 121 RIFRDHQRGCVSVRKKPRLGFC 142

BLAST of Cla97C05G086780 vs. TrEMBL
Match: tr|A0A1S3AWR3|A0A1S3AWR3_CUCME (uncharacterized protein LOC103483746 OS=Cucumis melo OX=3656 GN=LOC103483746 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 1.1e-79
Identity = 139/142 (97.89%), Postives = 142/142 (100.00%), Query Frame = 0

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDHAQASGFGTR+WNLSDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQY+SLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120

Query: 121 RIFRDHQRGCVSVRKKPRPDFC 143
           RIFRDHQRGC+SVRKKPRPDFC
Sbjct: 121 RIFRDHQRGCISVRKKPRPDFC 142

BLAST of Cla97C05G086780 vs. TrEMBL
Match: tr|A0A0A0L8V0|A0A0A0L8V0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G150060 PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 7.1e-79
Identity = 139/142 (97.89%), Postives = 141/142 (99.30%), Query Frame = 0

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQY+SLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120

Query: 121 RIFRDHQRGCVSVRKKPRPDFC 143
           RIFRDHQRGC+SVRKK RPDFC
Sbjct: 121 RIFRDHQRGCISVRKKQRPDFC 142

BLAST of Cla97C05G086780 vs. TrEMBL
Match: tr|A0A1R3IS40|A0A1R3IS40_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_21648 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 7.2e-71
Identity = 124/151 (82.12%), Postives = 134/151 (88.74%), Query Frame = 0

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPG G+FP G CFDGCRDH QASGFGTR+WNLSDRPVELQ+RVGSILKKVH+LKPGCSKR
Sbjct: 1   MPGLGIFPFGGCFDGCRDHTQASGFGTRVWNLSDRPVELQVRVGSILKKVHTLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRS---------MKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISL 120
           LKCKSIYKAYMPGRS         MKSLLYYYDE C PY+W+H++GGDS RMVKQQYISL
Sbjct: 61  LKCKSIYKAYMPGRSGNNGSANAGMKSLLYYYDETCHPYIWVHDTGGDSSRMVKQQYISL 120

Query: 121 EDLREFSEIRIFRDHQRGCVSVRKKPRPDFC 143
           EDLR+ SEIRIFRDHQRGC+SVRKKPRPDFC
Sbjct: 121 EDLRDCSEIRIFRDHQRGCISVRKKPRPDFC 151

BLAST of Cla97C05G086780 vs. TrEMBL
Match: tr|A0A1R3GAK7|A0A1R3GAK7_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_27392 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 1.8e-69
Identity = 122/152 (80.26%), Postives = 133/152 (87.50%), Query Frame = 0

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPG G+FP G CFDGCRDH Q+SGFGTR+WNLSDRPVELQ+RVGSILKKVH+LKPGCSKR
Sbjct: 1   MPGLGIFPFGGCFDGCRDHTQSSGFGTRVWNLSDRPVELQVRVGSILKKVHTLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRS----------MKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYIS 120
           LKCKSIYKAYMPGRS          MKSLLYYYDE C PY+W+H++GGDS RMVKQQYIS
Sbjct: 61  LKCKSIYKAYMPGRSGNNGSANYAGMKSLLYYYDETCHPYIWVHDTGGDSSRMVKQQYIS 120

Query: 121 LEDLREFSEIRIFRDHQRGCVSVRKKPRPDFC 143
           LEDLR+ SEIRIFRDHQRGC+SVRKK RPDFC
Sbjct: 121 LEDLRDCSEIRIFRDHQRGCISVRKKARPDFC 152

BLAST of Cla97C05G086780 vs. TrEMBL
Match: tr|A0A061ET99|A0A061ET99_THECC (EF-hand calcium-binding domain-containing protein 4A OS=Theobroma cacao OX=3641 GN=TCM_020511 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 3.0e-69
Identity = 123/148 (83.11%), Postives = 132/148 (89.19%), Query Frame = 0

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPG G+FP G CFDGCRDH QASGFGTRIWNLSDR VELQ+RVGSILKKVH+LKPG SKR
Sbjct: 20  MPGLGIFPFGGCFDGCRDHTQASGFGTRIWNLSDRAVELQVRVGSILKKVHTLKPGSSKR 79

Query: 61  LKCKSIYKAYMPGRS------MKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDL 120
           LKCKSIYKAYMPGRS      MKSLLYYYDE C PY+W+H++GGDS RMVKQQYISLEDL
Sbjct: 80  LKCKSIYKAYMPGRSGNGSGGMKSLLYYYDETCHPYIWVHDTGGDSSRMVKQQYISLEDL 139

Query: 121 REFSEIRIFRDHQRGCVSVRKKPRPDFC 143
           R+ SEIRIFRDHQRGC+SVRKKPRPDFC
Sbjct: 140 RDCSEIRIFRDHQRGCISVRKKPRPDFC 167

BLAST of Cla97C05G086780 vs. TAIR10
Match: AT3G06145.1 (unknown protein)

HSP 1 Score: 163.7 bits (413), Expect = 8.3e-41
Identity = 78/135 (57.78%), Postives = 101/135 (74.81%), Query Frame = 0

Query: 9   LGSCFDGCRDH-----AQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKRLKC 68
           L  C+ GC D         +   TR WNLSDRPVELQIRVGSILK+VH+LKPG SK+L+ 
Sbjct: 28  LRQCYGGCGDRTHLLPCSIATTSTRFWNLSDRPVELQIRVGSILKRVHTLKPGRSKKLRH 87

Query: 69  KSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEIRIF 128
           +SI++AY+  +  +  L YYD+ C PYVW+HE+G D  +MVKQQY+SLEDLR++SEIR+F
Sbjct: 88  RSIHRAYVDDQEGRRWL-YYDDTCLPYVWVHETGTDLSKMVKQQYVSLEDLRDYSEIRVF 147

Query: 129 RDHQRGCVSVRKKPR 139
           +D QRGCV+V K+ R
Sbjct: 148 KDLQRGCVAVEKRDR 161

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008438723.11.7e-7997.89PREDICTED: uncharacterized protein LOC103483746 [Cucumis melo][more]
XP_011650993.11.1e-7897.89PREDICTED: uncharacterized protein LOC105434839 [Cucumis sativus] >KGN57027.1 hy... [more]
XP_022936946.12.0e-7797.89uncharacterized protein LOC111443378 [Cucurbita moschata][more]
XP_023522910.12.7e-7797.18uncharacterized protein LOC111786960 [Cucurbita pepo subsp. pepo][more]
XP_022973671.12.3e-7696.48LOW QUALITY PROTEIN: uncharacterized protein LOC111472255 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
tr|A0A1S3AWR3|A0A1S3AWR3_CUCME1.1e-7997.89uncharacterized protein LOC103483746 OS=Cucumis melo OX=3656 GN=LOC103483746 PE=... [more]
tr|A0A0A0L8V0|A0A0A0L8V0_CUCSA7.1e-7997.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G150060 PE=4 SV=1[more]
tr|A0A1R3IS40|A0A1R3IS40_9ROSI7.2e-7182.12Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_21648 PE=4 SV=1[more]
tr|A0A1R3GAK7|A0A1R3GAK7_COCAP1.8e-6980.26Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_27392 PE=4 ... [more]
tr|A0A061ET99|A0A061ET99_THECC3.0e-6983.11EF-hand calcium-binding domain-containing protein 4A OS=Theobroma cacao OX=3641 ... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
AT3G06145.18.3e-4157.78unknown protein[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C05G086780.1Cla97C05G086780.1mRNA


The following gene(s) are paralogous to this gene:

None