CSPI03G13510 (gene) Wild cucumber (PI 183967)

NameCSPI03G13510
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionEF-hand calcium-binding domain-containing protein 4A
LocationChr3 : 10193934 .. 10194646 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTAGATTGCTATATAAACCTCTTGATTCTTTGTAGCCTTCAAACCACAGCCATCTGATCCCTCTTTTCATAGTTTCATCTCATTTATATATAGTTCAAACCACCCCAAGTAGTAATAGTCTTTCACATTTGGAAGGGTGGCAAAAACAGAATTGACATTTCGAGTTGTTTTTCGATCACTCGGTTGAGAGATGCCAGGATTTGGTGTTTTCCCTCTTGGTAGCTGCTTTGATGGGTGTAGAGACCATGCTCAAGCGTCGGGATTCGGCACTCGAATATGGAACTTGAGCGATAGACCAGTAGAGCTGCAGATAAGGGTGGGATCGATATTGAAAAAAGTGCATAGTTTGAAGCCAGGATGCTCAAAGAGGTTGAAATGTAAGAGTATTTACAAAGCATATATGCCAGGAAGAAGTATGAAGAGCTTGCTTTATTACTATGATGAAGCTTGTCAACCTTATGTTTGGATACATGAAAGTGGAGGTGATTCCATGAGAATGGTGAAGCAACAATACATCAGTCTTGAAGATCTAAGGGAGTTTTCTGAGATCAGAATCTTTAGGGATCATCAACGTGGCTGCATATCGGTTCGTAAGAAACAGAGGCCCGATTTTTGCTGATTTTTACACTCATAAATGTGTTTGCCTTCAACCTTTGTAACTTCTATATGAATGTTGTTCTTGTTTTTGAAGTCTGCAATGTCCACTTGTCTTT

mRNA sequence

ATGCCAGGATTTGGTGTTTTCCCTCTTGGTAGCTGCTTTGATGGGTGTAGAGACCATGCTCAAGCGTCGGGATTCGGCACTCGAATATGGAACTTGAGCGATAGACCAGTAGAGCTGCAGATAAGGGTGGGATCGATATTGAAAAAAGTGCATAGTTTGAAGCCAGGATGCTCAAAGAGGTTGAAATGTAAGAGTATTTACAAAGCATATATGCCAGGAAGAAGTATGAAGAGCTTGCTTTATTACTATGATGAAGCTTGTCAACCTTATGTTTGGATACATGAAAGTGGAGGTGATTCCATGAGAATGGTGAAGCAACAATACATCAGTCTTGAAGATCTAAGGGAGTTTTCTGAGATCAGAATCTTTAGGGATCATCAACGTGGCTGCATATCGGTTCGTAAGAAACAGAGGCCCGATTTTTGCTGA

Coding sequence (CDS)

ATGCCAGGATTTGGTGTTTTCCCTCTTGGTAGCTGCTTTGATGGGTGTAGAGACCATGCTCAAGCGTCGGGATTCGGCACTCGAATATGGAACTTGAGCGATAGACCAGTAGAGCTGCAGATAAGGGTGGGATCGATATTGAAAAAAGTGCATAGTTTGAAGCCAGGATGCTCAAAGAGGTTGAAATGTAAGAGTATTTACAAAGCATATATGCCAGGAAGAAGTATGAAGAGCTTGCTTTATTACTATGATGAAGCTTGTCAACCTTATGTTTGGATACATGAAAGTGGAGGTGATTCCATGAGAATGGTGAAGCAACAATACATCAGTCTTGAAGATCTAAGGGAGTTTTCTGAGATCAGAATCTTTAGGGATCATCAACGTGGCTGCATATCGGTTCGTAAGAAACAGAGGCCCGATTTTTGCTGA
BLAST of CSPI03G13510 vs. TrEMBL
Match: A0A0A0L8V0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G150060 PE=4 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 4.6e-80
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 1

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQY+SLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120

Query: 121 RIFRDHQRGCISVRKKQRPDFC 143
           RIFRDHQRGCISVRKKQRPDFC
Sbjct: 121 RIFRDHQRGCISVRKKQRPDFC 142

BLAST of CSPI03G13510 vs. TrEMBL
Match: A0A061ET99_THECC (EF-hand calcium-binding domain-containing protein 4A OS=Theobroma cacao GN=TCM_020511 PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 8.1e-69
Identity = 123/148 (83.11%), Postives = 131/148 (88.51%), Query Frame = 1

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPG G+FP G CFDGCRDH QASGFGTRIWNLSDR VELQ+RVGSILKKVH+LKPG SKR
Sbjct: 20  MPGLGIFPFGGCFDGCRDHTQASGFGTRIWNLSDRAVELQVRVGSILKKVHTLKPGSSKR 79

Query: 61  LKCKSIYKAYMPGRS------MKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDL 120
           LKCKSIYKAYMPGRS      MKSLLYYYDE C PY+W+H++GGDS RMVKQQYISLEDL
Sbjct: 80  LKCKSIYKAYMPGRSGNGSGGMKSLLYYYDETCHPYIWVHDTGGDSSRMVKQQYISLEDL 139

Query: 121 REFSEIRIFRDHQRGCISVRKKQRPDFC 143
           R+ SEIRIFRDHQRGCISVRKK RPDFC
Sbjct: 140 RDCSEIRIFRDHQRGCISVRKKPRPDFC 167

BLAST of CSPI03G13510 vs. TrEMBL
Match: A0A067G869_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g040596mg PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 3.1e-68
Identity = 119/150 (79.33%), Postives = 133/150 (88.67%), Query Frame = 1

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           +PGFG+FP G CFDGCRDH QASGFGTRIWNLSDRPVELQ+RVGSILKKVH+LKPG SKR
Sbjct: 20  IPGFGIFPFGGCFDGCRDHTQASGFGTRIWNLSDRPVELQVRVGSILKKVHTLKPGSSKR 79

Query: 61  LKCKSIYKAYMPGRS--------MKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLE 120
           LKCKSIYKAYMPGR+        MKSLLYYYDE C PY+WIH++G D++RMVKQQY+SL+
Sbjct: 80  LKCKSIYKAYMPGRNGNNSTNGGMKSLLYYYDETCHPYIWIHDTGSDTLRMVKQQYLSLD 139

Query: 121 DLREFSEIRIFRDHQRGCISVRKKQRPDFC 143
           DLR+ SEIR+FRDHQRGCISVRKK RPDFC
Sbjct: 140 DLRDCSEIRVFRDHQRGCISVRKKSRPDFC 169

BLAST of CSPI03G13510 vs. TrEMBL
Match: V4S820_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006064mg PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 3.1e-68
Identity = 119/150 (79.33%), Postives = 133/150 (88.67%), Query Frame = 1

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           +PGFG+FP G CFDGCRDH QASGFGTRIWNLSDRPVELQ+RVGSILKKVH+LKPG SKR
Sbjct: 20  IPGFGIFPFGGCFDGCRDHTQASGFGTRIWNLSDRPVELQVRVGSILKKVHTLKPGSSKR 79

Query: 61  LKCKSIYKAYMPGRS--------MKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLE 120
           LKCKSIYKAYMPGR+        MKSLLYYYDE C PY+WIH++G D++RMVKQQY+SL+
Sbjct: 80  LKCKSIYKAYMPGRNGNNSTNGGMKSLLYYYDETCHPYIWIHDTGSDTLRMVKQQYLSLD 139

Query: 121 DLREFSEIRIFRDHQRGCISVRKKQRPDFC 143
           DLR+ SEIR+FRDHQRGCISVRKK RPDFC
Sbjct: 140 DLRDCSEIRVFRDHQRGCISVRKKSRPDFC 169

BLAST of CSPI03G13510 vs. TrEMBL
Match: W9RWH9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_010025 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 4.0e-68
Identity = 119/142 (83.80%), Postives = 130/142 (91.55%), Query Frame = 1

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MP FG+FP+G C DGCRDH Q SGFGTRIWNLSD+PVELQIRVGSILKKVH+LKPG SKR
Sbjct: 20  MPRFGIFPVGGCLDGCRDHTQGSGFGTRIWNLSDKPVELQIRVGSILKKVHTLKPGSSKR 79

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEI 120
           LKCKSIYKAYMPG + KSLLYYYDE C PYVWI+++GGDS+RMVKQQYISLEDLR+FSEI
Sbjct: 80  LKCKSIYKAYMPGENGKSLLYYYDETCHPYVWINDTGGDSLRMVKQQYISLEDLRDFSEI 139

Query: 121 RIFRDHQRGCISVRKKQRPDFC 143
           R+FRDHQRGCISVRKK RPD C
Sbjct: 140 RVFRDHQRGCISVRKKARPDVC 161

BLAST of CSPI03G13510 vs. TAIR10
Match: AT3G06145.1 (AT3G06145.1 unknown protein)

HSP 1 Score: 163.7 bits (413), Expect = 8.4e-41
Identity = 77/135 (57.04%), Postives = 101/135 (74.81%), Query Frame = 1

Query: 9   LGSCFDGCRDHAQA-----SGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKRLKC 68
           L  C+ GC D         +   TR WNLSDRPVELQIRVGSILK+VH+LKPG SK+L+ 
Sbjct: 28  LRQCYGGCGDRTHLLPCSIATTSTRFWNLSDRPVELQIRVGSILKRVHTLKPGRSKKLRH 87

Query: 69  KSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEIRIF 128
           +SI++AY+  +  +  LYY D+ C PYVW+HE+G D  +MVKQQY+SLEDLR++SEIR+F
Sbjct: 88  RSIHRAYVDDQEGRRWLYY-DDTCLPYVWVHETGTDLSKMVKQQYVSLEDLRDYSEIRVF 147

Query: 129 RDHQRGCISVRKKQR 139
           +D QRGC++V K+ R
Sbjct: 148 KDLQRGCVAVEKRDR 161

BLAST of CSPI03G13510 vs. NCBI nr
Match: gi|778678588|ref|XP_011650993.1| (PREDICTED: uncharacterized protein LOC105434839 [Cucumis sativus])

HSP 1 Score: 305.1 bits (780), Expect = 6.6e-80
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 1

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQY+SLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120

Query: 121 RIFRDHQRGCISVRKKQRPDFC 143
           RIFRDHQRGCISVRKKQRPDFC
Sbjct: 121 RIFRDHQRGCISVRKKQRPDFC 142

BLAST of CSPI03G13510 vs. NCBI nr
Match: gi|659076516|ref|XP_008438723.1| (PREDICTED: uncharacterized protein LOC103483746 [Cucumis melo])

HSP 1 Score: 302.4 bits (773), Expect = 4.3e-79
Identity = 139/142 (97.89%), Postives = 141/142 (99.30%), Query Frame = 1

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDHAQASGFGTR+WNLSDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQY+SLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120

Query: 121 RIFRDHQRGCISVRKKQRPDFC 143
           RIFRDHQRGCISVRKK RPDFC
Sbjct: 121 RIFRDHQRGCISVRKKPRPDFC 142

BLAST of CSPI03G13510 vs. NCBI nr
Match: gi|590657580|ref|XP_007034603.1| (EF-hand calcium-binding domain-containing protein 4A [Theobroma cacao])

HSP 1 Score: 267.7 bits (683), Expect = 1.2e-68
Identity = 123/148 (83.11%), Postives = 131/148 (88.51%), Query Frame = 1

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPG G+FP G CFDGCRDH QASGFGTRIWNLSDR VELQ+RVGSILKKVH+LKPG SKR
Sbjct: 20  MPGLGIFPFGGCFDGCRDHTQASGFGTRIWNLSDRAVELQVRVGSILKKVHTLKPGSSKR 79

Query: 61  LKCKSIYKAYMPGRS------MKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDL 120
           LKCKSIYKAYMPGRS      MKSLLYYYDE C PY+W+H++GGDS RMVKQQYISLEDL
Sbjct: 80  LKCKSIYKAYMPGRSGNGSGGMKSLLYYYDETCHPYIWVHDTGGDSSRMVKQQYISLEDL 139

Query: 121 REFSEIRIFRDHQRGCISVRKKQRPDFC 143
           R+ SEIRIFRDHQRGCISVRKK RPDFC
Sbjct: 140 RDCSEIRIFRDHQRGCISVRKKPRPDFC 167

BLAST of CSPI03G13510 vs. NCBI nr
Match: gi|567853305|ref|XP_006419816.1| (hypothetical protein CICLE_v10006064mg [Citrus clementina])

HSP 1 Score: 265.8 bits (678), Expect = 4.4e-68
Identity = 119/150 (79.33%), Postives = 133/150 (88.67%), Query Frame = 1

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           +PGFG+FP G CFDGCRDH QASGFGTRIWNLSDRPVELQ+RVGSILKKVH+LKPG SKR
Sbjct: 20  IPGFGIFPFGGCFDGCRDHTQASGFGTRIWNLSDRPVELQVRVGSILKKVHTLKPGSSKR 79

Query: 61  LKCKSIYKAYMPGRS--------MKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLE 120
           LKCKSIYKAYMPGR+        MKSLLYYYDE C PY+WIH++G D++RMVKQQY+SL+
Sbjct: 80  LKCKSIYKAYMPGRNGNNSTNGGMKSLLYYYDETCHPYIWIHDTGSDTLRMVKQQYLSLD 139

Query: 121 DLREFSEIRIFRDHQRGCISVRKKQRPDFC 143
           DLR+ SEIR+FRDHQRGCISVRKK RPDFC
Sbjct: 140 DLRDCSEIRVFRDHQRGCISVRKKSRPDFC 169

BLAST of CSPI03G13510 vs. NCBI nr
Match: gi|703125908|ref|XP_010103425.1| (hypothetical protein L484_010025 [Morus notabilis])

HSP 1 Score: 265.4 bits (677), Expect = 5.8e-68
Identity = 119/142 (83.80%), Postives = 130/142 (91.55%), Query Frame = 1

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MP FG+FP+G C DGCRDH Q SGFGTRIWNLSD+PVELQIRVGSILKKVH+LKPG SKR
Sbjct: 20  MPRFGIFPVGGCLDGCRDHTQGSGFGTRIWNLSDKPVELQIRVGSILKKVHTLKPGSSKR 79

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEI 120
           LKCKSIYKAYMPG + KSLLYYYDE C PYVWI+++GGDS+RMVKQQYISLEDLR+FSEI
Sbjct: 80  LKCKSIYKAYMPGENGKSLLYYYDETCHPYVWINDTGGDSLRMVKQQYISLEDLRDFSEI 139

Query: 121 RIFRDHQRGCISVRKKQRPDFC 143
           R+FRDHQRGCISVRKK RPD C
Sbjct: 140 RVFRDHQRGCISVRKKARPDVC 161

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L8V0_CUCSA4.6e-8099.30Uncharacterized protein OS=Cucumis sativus GN=Csa_3G150060 PE=4 SV=1[more]
A0A061ET99_THECC8.1e-6983.11EF-hand calcium-binding domain-containing protein 4A OS=Theobroma cacao GN=TCM_0... [more]
A0A067G869_CITSI3.1e-6879.33Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g040596mg PE=4 SV=1[more]
V4S820_9ROSI3.1e-6879.33Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006064mg PE=4 SV=1[more]
W9RWH9_9ROSA4.0e-6883.80Uncharacterized protein OS=Morus notabilis GN=L484_010025 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G06145.18.4e-4157.04 unknown protein[more]
Match NameE-valueIdentityDescription
gi|778678588|ref|XP_011650993.1|6.6e-8099.30PREDICTED: uncharacterized protein LOC105434839 [Cucumis sativus][more]
gi|659076516|ref|XP_008438723.1|4.3e-7997.89PREDICTED: uncharacterized protein LOC103483746 [Cucumis melo][more]
gi|590657580|ref|XP_007034603.1|1.2e-6883.11EF-hand calcium-binding domain-containing protein 4A [Theobroma cacao][more]
gi|567853305|ref|XP_006419816.1|4.4e-6879.33hypothetical protein CICLE_v10006064mg [Citrus clementina][more]
gi|703125908|ref|XP_010103425.1|5.8e-6883.80hypothetical protein L484_010025 [Morus notabilis][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G13510.1CSPI03G13510.1mRNA


The following gene(s) are paralogous to this gene:

None