CmoCh03G000800 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh03G000800
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Uv-b-insensitive 4, putative
Location	Cmo_Chr03 : 1216945 .. 1219790 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTTATATTAGGGCTTCTCTTGTTTTCTTTTTCTTTGAAATGATTGTTTTCTTGTCGTTTCCTTTTGAAGTTCCATAATGTCGGAATCAAGAGATAGATTGGAGAGGCAAGTAGATCATGCCGAGGTATTTGCTCGTTGGAGATCGGAAGGTATATTGGATGAGAAAGAAATGAGTACTAATTTGTTAAGGACTCCGATTTCTCGCGCCACAACGACGACTACAGATCAACAAAGACCTACGAATCTGAGACGCAGTTTTGGTTCTCCCATTTCTGGTGGAATTGGGCGAAATAGATTTCTCTACAGATCTCCTGTGTTGAGCCGCGAGAATGCGGTGGCTGGGAGCTCCCGGCGGAGTAGATCTCGGGGGAGGAATAGTGTGTTACCGATTTGGTATCCAAGAACTCCTCTCCGCGACATAACTGCAGTTGTGAGGGTAAATGACTAATCCCGTTACTTTGTTTTTGTTCTGCTAAAATCTTTCAATATTTTGTTCTGTTCTGCGTATAATTTTGTGGATTACTTGGATGTAGTATCCAGTGAATTTGATTCATATGATATATGGAAAATTCACTCTCATTGTTATTGCATATGGTCTCTGGTATTATATTGTTCTCTGATACAGTATACTTGTTTGGAGTCATTCAAAATTGAATTTGCTTGATCTTCGGGAAAGATCCTTTTGATTTTCTGGTGTAGTTGTTATTCTTGTTTCTGTTTTTCAGTTGGTAGCATTAGGTTTGATTTGATTTGAATCGATTTTCGACTGAAAATGTTAATGCTATCTCTAATTCTTTTAGTGAATTCTTAGGTTGGATCACTTTCCTTTTTCTTTAAGTTAATTAATCAATAAATTTTCAGTGCTTTTAAGCTATGTTCTACCAACCTGTTTGTCTAAAAAGAAGATTCTTTTGGTTTTGTAACGTCCATGCCCAATGATTTCATATGAAACATCAACAGTCTGGATAATGAGATCCTGTCCACCATTAATTAAAGCTATCATAATGCTCCTTTTTTGGTATTAATTAATTATTTTTTTCTTTGATTCTAATTGTTTTTTAGGCTTCATTTTCACCTGTTTTTAGAACTACTTTTTGGTGGGCTCAAATATGCTTTGGCTGGTTACTAGTATGTGTTGACTTGATACCCAATGATCATTTTGGCCCTATGTGAAAGCTGTAATTTGGATGTAAAAAATACACATACACAAGCAATAATAGTTTAACATTCTGATTGAAATACATATTAACACTGATATTATCATTTCCTTGTGGGACGTTTATAATGCTTATTAAACATGTGTTTGATACTTGTGAATGGGCCAAAACCCTAATGGGCTTCCTTCATAAAATCGTGTGCTCGCTTCTGGGTGTTATTTCTATCGGAATTCGTAGCTCAATTTGTGTTCTCCAAGCAAATGATCTTAGTAATGTAGAAAAATAGATGCATGGTTTTTAAAAATGTATGCTTTTTGTGACCTCATTTTCCAGCAAATATCTTATCGAGGTATAAATGCATCGCACCTTCACTATGTCACGTGCTTGTGTTTGTGCATCATTCATCTAGAATCTTCCCATCTCTGTAAGTTGGTTCCCTGATATTTTTGCTGTCTATGGGGAATATTTCCCCATCTTTTCACGTCTTTCGGGATCTTTTCAGTCTTTCGGGATGTTAATGAGTAGCTACAATAGTTTAAGCTCACCACTAGTTGATATTATCTTTTTTGTGCTCTCTTCAAGATCATTCCCCTCAAGATTTTAAAACGCATCTACTAGGGAGCGGTTTCCACCTCTTATAAAGGAATATTTTGTTCCCTCTCCAACCAATGTGAATGGGATCTCACAATTCAGCCCCTTGTGGAACAACGTCCTTGTTGTCACATTGCGTGGTGTCTTTCTCTGATATCATTTATAACAACACAAGCTCACTGCCAATAGATATTATCTGCTTTGGCCTAGTACAAATGGTATCAAAGTTAGACATCAAGCGACGTGCTAGTGAGGACGTTGGGCCCCCAAAAGAGATGGATTATGAGATCCCATATTGGTTGGAGAGGGGGAAGGAACGAAGCATTTTTCATAAGAGTGAAGAAACCTCCCTCTAGTAAATGCGTTCTAAAATTGTGAGACTAACGACGATACGTAACAACCCAAGCTAACAATATCTATTAGTAATGGGTTCAATAGTGAATTGTCGCTCATGCTTTTATATATGTTCTTCAGATTCCCATTTTTATAGTTTTCAACTTATTTTGCTTTTAATCAGGCAATTGAAAGAACAAGAGCTCGCATGAAAGAAAACAAAGGCCCAGGAAGTGATATTAGTCCTGCTCCCTCGGACGAAAGAGTTTTAGAGGCAAGCATTTTTCTGGTCACCCCAAAGGCAACCATAGGCAAAGTGCCAAAGATTCTTCGTGGAATCACAAATCAAAACGTGGGAGGGGCAGAGACTCTGACTCCCCAGAATAAGCTTTTGAACTCCATAGACAAGGTGGAGAAAGTAGTAATGGAGGAGCTGCAGAAATTGAAAAGGACAAGCAGTGCGAAGAAAGCAGAGAGGGAGAAAAGAGTTCGCACTTTAATGTCATTTCGTTGATTCAGTTCAACAAAGACACGCCCAGAATTAGACAACGCCCACATCAAAGTCCAAACTCCTTCCCCCTCTTTGCCCTCTTGGCAATGGCAATCATCAGACTCACTCAGAATTTGGATCAACCATCTGCTGATGATTGCTTTGGTCAAGAACGCTCGTTGATCAGAGGGAAGGAGAAAGAGATCATCAGACTCACTCAGAATTTGAATCCTTTTCATTTGCAAGAACCATCTTTGCTTTTAGATGTTTAATA

mRNA sequence

AGTTATATTAGGGCTTCTCTTGTTTTCTTTTTCTTTGAAATGATTGTTTTCTTGTCGTTTCCTTTTGAAGTTCCATAATGTCGGAATCAAGAGATAGATTGGAGAGGCAAGTAGATCATGCCGAGGTATTTGCTCGTTGGAGATCGGAAGGTATATTGGATGAGAAAGAAATGAGTACTAATTTGTTAAGGACTCCGATTTCTCGCGCCACAACGACGACTACAGATCAACAAAGACCTACGAATCTGAGACGCAGTTTTGGTTCTCCCATTTCTGGTGGAATTGGGCGAAATAGATTTCTCTACAGATCTCCTGTGTTGAGCCGCGAGAATGCGGTGGCTGGGAGCTCCCGGCGGAGTAGATCTCGGGGGAGGAATAGTGTGTTACCGATTTGGTATCCAAGAACTCCTCTCCGCGACATAACTGCAGTTGTGAGGGCAATTGAAAGAACAAGAGCTCGCATGAAAGAAAACAAAGGCCCAGGAAGTGATATTAGTCCTGCTCCCTCGGACGAAAGAGTTTTAGAGGCAAGCATTTTTCTGGTCACCCCAAAGGCAACCATAGGCAAAGTGCCAAAGATTCTTCGTGGAATCACAAATCAAAACGTGGGAGGGGCAGAGACTCTGACTCCCCAGAATAAGCTTTTGAACTCCATAGACAAGGTGGAGAAAGTAGTAATGGAGGAGCTGCAGAAATTGAAAAGGACAAGCAGTGCGAAGAAAGCAGAGAGGGAGAAAAGAGTTCGCACTTTAATGTCATTTCGTTGATTCAGTTCAACAAAGACACGCCCAGAATTAGACAACGCCCACATCAAAGTCCAAACTCCTTCCCCCTCTTTGCCCTCTTGGCAATGGCAATCATCAGACTCACTCAGAATTTGGATCAACCATCTGCTGATGATTGCTTTGGTCAAGAACGCTCGTTGATCAGAGGGAAGGAGAAAGAGATCATCAGACTCACTCAGAATTTGAATCCTTTTCATTTGCAAGAACCATCTTTGCTTTTAGATGTTTAATA

Coding sequence (CDS)

ATGTCGGAATCAAGAGATAGATTGGAGAGGCAAGTAGATCATGCCGAGGTATTTGCTCGTTGGAGATCGGAAGGTATATTGGATGAGAAAGAAATGAGTACTAATTTGTTAAGGACTCCGATTTCTCGCGCCACAACGACGACTACAGATCAACAAAGACCTACGAATCTGAGACGCAGTTTTGGTTCTCCCATTTCTGGTGGAATTGGGCGAAATAGATTTCTCTACAGATCTCCTGTGTTGAGCCGCGAGAATGCGGTGGCTGGGAGCTCCCGGCGGAGTAGATCTCGGGGGAGGAATAGTGTGTTACCGATTTGGTATCCAAGAACTCCTCTCCGCGACATAACTGCAGTTGTGAGGGCAATTGAAAGAACAAGAGCTCGCATGAAAGAAAACAAAGGCCCAGGAAGTGATATTAGTCCTGCTCCCTCGGACGAAAGAGTTTTAGAGGCAAGCATTTTTCTGGTCACCCCAAAGGCAACCATAGGCAAAGTGCCAAAGATTCTTCGTGGAATCACAAATCAAAACGTGGGAGGGGCAGAGACTCTGACTCCCCAGAATAAGCTTTTGAACTCCATAGACAAGGTGGAGAAAGTAGTAATGGAGGAGCTGCAGAAATTGAAAAGGACAAGCAGTGCGAAGAAAGCAGAGAGGGAGAAAAGAGTTCGCACTTTAATGTCATTTCGTTGA

Homology

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BLAST of CmoCh03G000800 vs. Swiss-Prot
Match: PYM_ARATH (Protein POLYCHOME OS=Arabidopsis thaliana GN=PYM PE=1 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.0e-45
Identity = 130/262 (49.62%), Postives = 156/262 (59.54%), Query Frame = 1


Query: 1   MSESRDRLERQVDHAEVFARWRSEGIL-DEKEMSTNLLRTPISRATTTTTD--------- 60
           M E+RDR+ERQVD+   F   RS GIL DE     NL  +P+ R  +  T          
Sbjct: 1   MPEARDRIERQVDYPAAFLNRRSHGILLDEPATQHNLFGSPVQRVPSEATGGLGSIGQGS 60

Query: 61  -QQRPTNLRRSFGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPR 120
              R   +R +FG   +GG  R +  +RSP   REN   G +RR R+R  NSVLP WYPR
Sbjct: 61  MTGRGGLVRGNFGIRRTGGGRRGQIQFRSPQ-GRENMSLGVTRRGRARASNSVLPSWYPR 120

Query: 121 TPLRDITAVVRAIERTRARMKENKGPGSDI-SPAPSDERVLEASIFL-----------VT 180
           TPLRDI+AVVRAIER RARM E  G G DI +P P    VL++ + L           VT
Sbjct: 121 TPLRDISAVVRAIERRRARMGE--GVGRDIETPTPQQLGVLDSLVPLSGAHLEHDYSMVT 180

Query: 181 PKATIG----------KVPKILRGITNQNVGGAETLTPQNKLLNSIDKVEKVVMEELQKL 230
           P  +IG          KV +IL  IT +N G  + LTP+ KLLNSIDKVEKVVMEE+QK+
Sbjct: 181 PGPSIGFKRPWPPSTAKVHQILLDITRENTGEEDALTPEKKLLNSIDKVEKVVMEEIQKM 240

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BLAST of CmoCh03G000800 vs. Swiss-Prot
Match: GIG1_ARATH (Protein GIGAS CELL1 OS=Arabidopsis thaliana GN=GIG1 PE=1 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.7e-27
Identity = 105/254 (41.34%), Postives = 134/254 (52.76%), Query Frame = 1


Query: 1   MSESRDRLERQVDHAEVFARWRSEGIL-DEKEMSTNLLRTPISRATTTTTDQQRPTNLRR 60
           M E+RDR ER VD++ +FA  R  GIL DE +   +L+ +P++    +            
Sbjct: 1   MPEARDRTERPVDYSTIFANRRRHGILLDEPDSRLSLIESPVNPDIGSIGGTGGLVRGNF 60

Query: 61  SFGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTPLRDITAVV 120
           +   P +G  G   F  R P   REN    ++RR R  G   +LP WYPRTPLRDIT +V
Sbjct: 61  TTWRPGNGRGGHTPF--RLPQ-GRENMPIVTARRGRGGG---LLPSWYPRTPLRDITHIV 120

Query: 121 RAIERTRARMKENKGPGSDIS-----PAPSDERVLEASIFL--------VTPKATIG--- 180
           RAIER R       G G D       P      VLE+ + L        VTP  ++G   
Sbjct: 121 RAIERRRGA-----GTGGDDGRVIEIPTHRQVGVLESPVPLSGEHKCSMVTPGPSVGFKR 180

Query: 181 -------KVPKILRGITNQNVGG-AETLTPQNKLLNSIDKVEKVVMEELQKLKRTSSAKK 230
                  KV K+L  IT +     A  +TP+ KLLNSIDKVEK+VM E+QKLK T  AK+
Sbjct: 181 SCPPSTAKVQKMLLDITKEIAEEEAGFITPEKKLLNSIDKVEKIVMAEIQKLKSTPQAKR 240

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BLAST of CmoCh03G000800 vs. TrEMBL
Match: A0A0A0KY99_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G152290 PE=4 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 3.1e-94
Identity = 196/249 (78.71%), Postives = 210/249 (84.34%), Query Frame = 1


Query: 1   MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLRTPISRATTTTTDQQRPTN---- 60
           MSE+RDRLERQVD+AEVFAR RSEGILDE+EM +NL+ TPI+RATTT T QQRPTN    
Sbjct: 65  MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRPTNPGPG 124

Query: 61  -----LRRSFGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTP 120
                LRR+FGSPISGGIGRNRFLYR+PVLSREN  AGSSRRSRSRGRNSVLPIWYPRTP
Sbjct: 125 GGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 184

Query: 121 LRDITAVVRAIERTRARMKENKGPGSDISPAPSDERVLEAS-----------IFLVTPKA 180
           LRDITAVVRAIERTRAR++EN+G GSD SPAPSDER LE S           I L+TPK 
Sbjct: 185 LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP 244

Query: 181 TIGKVPKILRGITNQNVGGAETLTPQNKLLNSIDKVEKVVMEELQKLKRTSSAKKAEREK 230
           T+GKVPKILRGI N+N  GAE LTPQ KLLNSIDKVEKVVMEELQKLKRT SAKKAEREK
Sbjct: 245 TVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 304

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BLAST of CmoCh03G000800 vs. TrEMBL
Match: F6HL68_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g07790 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 9.7e-48
Identity = 141/267 (52.81%), Postives = 161/267 (60.30%), Query Frame = 1


Query: 1   MSESRDRLERQVDHAEVFARWRSE--GIL-DEKEMSTNLLRTPISRATTTTTDQ---QRP 60
           M ESRDRL R  D AE+F R RS   GIL D  E S+NL  +P  R TTT T     +  
Sbjct: 1   MPESRDRLSRPEDIAELFLRRRSGILGILADGSERSSNLFASPSRRETTTRTTTLGARGA 60

Query: 61  TNL---------RRSFGSP-ISGGIGRNRFLYRSPVLSRENAVA-GSSRRSRSRGRNSVL 120
           T +         R  FG+P I  G GR R +YRSP+  REN  A GS RR R R  NSVL
Sbjct: 61  TGILASRGGGVGRGGFGTPRIGTGRGRGRAVYRSPLFGRENTPATGSGRRGRGRSGNSVL 120

Query: 121 PIWYPRTPLRDITAVVRAIERTRARMKENKGPGSDISPAPSD------------ERVLEA 180
           P WYPRTPLRDIT VVRAIER RAR++E  G   DI P P D               LE 
Sbjct: 121 PSWYPRTPLRDITHVVRAIERRRARLREIDGQQIDI-PIPQDISDVHDPILPPSSAQLEQ 180

Query: 181 SIFLVTPKAT---------IGKVPKILRGITNQNVGGAETLTPQNKLLNSIDKVEKVVME 230
            I +++P  T         +GKVPKIL  IT+Q  GG++ LTPQ KLLNSID VEK VM+
Sbjct: 181 DISMISPSPTSGMKLVPKAVGKVPKILLDITDQTGGGSDFLTPQKKLLNSIDTVEKAVMD 240

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BLAST of CmoCh03G000800 vs. TrEMBL
Match: A0A061EX89_THECC (Uv-b-insensitive 4, putative OS=Theobroma cacao GN=TCM_024844 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.0e-44
Identity = 136/258 (52.71%), Postives = 159/258 (61.63%), Query Frame = 1


Query: 1   MSESRDRLERQVDHAEVFARWRSE--GILDEKEMSTNLLRTPISRATT-------TTTDQ 60
           M++SRDR+ R VD AEVFAR RS   GIL ++  +  LL +P+ R  T        TT  
Sbjct: 1   MADSRDRITRAVDIAEVFARRRSGPLGILSDE--AQELLASPVQRPVTRRPMGVAVTTST 60

Query: 61  QRPTNLRR--SFGSPISG-GIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYP 120
            R   LRR  SFG+P SG  IGRN  LYRSP   RENA  G   R R R   SVLP WYP
Sbjct: 61  SRGGGLRRGSSFGTPRSGIRIGRN--LYRSPAPGRENAPMGVMGRGRGRLTGSVLPSWYP 120

Query: 121 RTPLRDITAVVRAIERTRARMKENKGPGSDISPAPSDERVLEASIF--------LVTPKA 180
           RTPLRDITAVVRAIER RAR+ E +    + SP   DERVL +++           TP +
Sbjct: 121 RTPLRDITAVVRAIERRRARLGEGERQILE-SPTSQDERVLNSNLSSGVQLEHNFSTPAS 180

Query: 181 T---------IGKVPKILRGITNQNVGGAETLTPQNKLLNSIDKVEKVVMEELQKLKRTS 230
           T         +  V KIL  +TNQN   +E LTPQ KLLNSID VEK V+EELQK+KRT 
Sbjct: 181 TARMKPCPQSVRNVSKILLNVTNQNGEESEILTPQKKLLNSIDTVEKAVLEELQKMKRTP 240

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BLAST of CmoCh03G000800 vs. TrEMBL
Match: D7LI35_ARALL (Polychome, UV-B-insensitive 4 OS=Arabidopsis lyrata subsp. lyrata GN=UVI4 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 4.2e-43
Identity = 127/261 (48.66%), Postives = 155/261 (59.39%), Query Frame = 1


Query: 1   MSESRDRLERQVDHAEVFARWRSEGIL-DEKEMSTNLLRTPISRATTTTTD--------- 60
           M E+RDR+ER VD+   F   RS GIL DE     NL  +P+ R  +  T          
Sbjct: 1   MPEARDRIERPVDYPAAFLNRRSHGILLDEPATHHNLFGSPVQRVPSEATGLGSVGQGSM 60

Query: 61  QQRPTNLRRSFGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRT 120
             R   +R +FG   +GG  R +  +RSP   REN   G +RR R+R  NSVLP WYPRT
Sbjct: 61  MGRGGLVRGNFGIRRTGGGRRGQIQFRSPQ-GRENMSLGVTRRGRARASNSVLPSWYPRT 120

Query: 121 PLRDITAVVRAIERTRARMKENKGPGSDI-SPAPSDERVLEASIFL-----------VTP 180
           PLRD++AVVRA+ER RARM E  G G DI +P P    VL++ + L           VTP
Sbjct: 121 PLRDVSAVVRAVERRRARMGE--GVGRDIETPTPQQLGVLDSLVPLSGAQLEHDYSMVTP 180

Query: 181 KATIG----------KVPKILRGITNQNVGGAETLTPQNKLLNSIDKVEKVVMEELQKLK 230
             ++G          KV +IL  IT +N G  + LTPQ KLLNSIDKVEKVVMEE+QK+K
Sbjct: 181 GPSVGFKRPWPPSTAKVHQILLDITRENTGEEDALTPQKKLLNSIDKVEKVVMEEIQKMK 240

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BLAST of CmoCh03G000800 vs. TrEMBL
Match: V4LQQ2_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10017150mg PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.0e-41
Identity = 125/252 (49.60%), Postives = 153/252 (60.71%), Query Frame = 1


Query: 1   MSESRDRLERQVDHAEVFARWRSEGIL-DEKEMSTNLLRTPISRATTTTTDQQRPTNLRR 60
           M E+RDR+ER VD+   F   RS GIL D+     +L  +P+ R  +      R   +R 
Sbjct: 1   MPEARDRIERPVDYPAAFLSRRSNGILHDDPVTQHSLFGSPVQRVPSEPVIG-RGGLVRG 60

Query: 61  SFGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTPLRDITAVV 120
           +FG   +GG  R +  +RSP   REN   G +RR R+R   SVLP WYPRTPLRD++ VV
Sbjct: 61  NFGIRRTGGGRRGQTQFRSPQ-GRENMSLGVARRGRARASTSVLPSWYPRTPLRDVSGVV 120

Query: 121 RAIERTRARMKENKGPGSDI-SPAPSDERVLEASIFL-----------VTPKATIG---- 180
           RAIER RARM E  G G DI +P P    VL++ + L           VTP  ++G    
Sbjct: 121 RAIERRRARMGE--GVGRDIETPTPQQLGVLDSLVPLSGAQLEHNYSMVTPGPSVGFKRP 180

Query: 181 ------KVPKILRGITNQNVGGAETLTPQNKLLNSIDKVEKVVMEELQKLKRTSSAKKAE 230
                 KV KIL  IT +N G  E+LTPQ KLLNSIDKVEKVVMEE+QK+K T SAK+AE
Sbjct: 181 WPPSAAKVHKILLDITRENTGEEESLTPQKKLLNSIDKVEKVVMEEIQKMKSTPSAKRAE 240

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BLAST of CmoCh03G000800 vs. TAIR10
Match: AT2G42260.1 (AT2G42260.1 uv-b-insensitive 4)

HSP 1 Score: 184.9 bits (468), Expect = 5.6e-47
Identity = 130/262 (49.62%), Postives = 156/262 (59.54%), Query Frame = 1


Query: 1   MSESRDRLERQVDHAEVFARWRSEGIL-DEKEMSTNLLRTPISRATTTTTD--------- 60
           M E+RDR+ERQVD+   F   RS GIL DE     NL  +P+ R  +  T          
Sbjct: 1   MPEARDRIERQVDYPAAFLNRRSHGILLDEPATQHNLFGSPVQRVPSEATGGLGSIGQGS 60

Query: 61  -QQRPTNLRRSFGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPR 120
              R   +R +FG   +GG  R +  +RSP   REN   G +RR R+R  NSVLP WYPR
Sbjct: 61  MTGRGGLVRGNFGIRRTGGGRRGQIQFRSPQ-GRENMSLGVTRRGRARASNSVLPSWYPR 120

Query: 121 TPLRDITAVVRAIERTRARMKENKGPGSDI-SPAPSDERVLEASIFL-----------VT 180
           TPLRDI+AVVRAIER RARM E  G G DI +P P    VL++ + L           VT
Sbjct: 121 TPLRDISAVVRAIERRRARMGE--GVGRDIETPTPQQLGVLDSLVPLSGAHLEHDYSMVT 180

Query: 181 PKATIG----------KVPKILRGITNQNVGGAETLTPQNKLLNSIDKVEKVVMEELQKL 230
           P  +IG          KV +IL  IT +N G  + LTP+ KLLNSIDKVEKVVMEE+QK+
Sbjct: 181 PGPSIGFKRPWPPSTAKVHQILLDITRENTGEEDALTPEKKLLNSIDKVEKVVMEEIQKM 240

[Close]

BLAST of CmoCh03G000800 vs. TAIR10
Match: AT3G57860.1 (AT3G57860.1 UV-B-insensitive 4-like)

HSP 1 Score: 123.6 bits (309), Expect = 1.5e-28
Identity = 105/254 (41.34%), Postives = 134/254 (52.76%), Query Frame = 1


Query: 1   MSESRDRLERQVDHAEVFARWRSEGIL-DEKEMSTNLLRTPISRATTTTTDQQRPTNLRR 60
           M E+RDR ER VD++ +FA  R  GIL DE +   +L+ +P++    +            
Sbjct: 1   MPEARDRTERPVDYSTIFANRRRHGILLDEPDSRLSLIESPVNPDIGSIGGTGGLVRGNF 60

Query: 61  SFGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTPLRDITAVV 120
           +   P +G  G   F  R P   REN    ++RR R  G   +LP WYPRTPLRDIT +V
Sbjct: 61  TTWRPGNGRGGHTPF--RLPQ-GRENMPIVTARRGRGGG---LLPSWYPRTPLRDITHIV 120

Query: 121 RAIERTRARMKENKGPGSDIS-----PAPSDERVLEASIFL--------VTPKATIG--- 180
           RAIER R       G G D       P      VLE+ + L        VTP  ++G   
Sbjct: 121 RAIERRRGA-----GTGGDDGRVIEIPTHRQVGVLESPVPLSGEHKCSMVTPGPSVGFKR 180

Query: 181 -------KVPKILRGITNQNVGG-AETLTPQNKLLNSIDKVEKVVMEELQKLKRTSSAKK 230
                  KV K+L  IT +     A  +TP+ KLLNSIDKVEK+VM E+QKLK T  AK+
Sbjct: 181 SCPPSTAKVQKMLLDITKEIAEEEAGFITPEKKLLNSIDKVEKIVMAEIQKLKSTPQAKR 240

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BLAST of CmoCh03G000800 vs. NCBI nr
Match: gi|659121757|ref|XP_008460799.1| (PREDICTED: protein POLYCHOME [Cucumis melo])

HSP 1 Score: 355.1 bits (910), Expect = 8.9e-95
Identity = 197/249 (79.12%), Postives = 211/249 (84.74%), Query Frame = 1


Query: 1   MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLRTPISRATTTTTDQQRPTN---- 60
           MSE+RDRLERQVD+AEVFAR RSEGILDE+EM +NL+ TPI+RATTTT  QQRPTN    
Sbjct: 1   MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTTAAQQRPTNPGPG 60

Query: 61  -----LRRSFGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTP 120
                LRR+FGSPISGGIGRNRFLYR+PVLSREN  AGSSRRSRSRGRNSVLPIWYPRTP
Sbjct: 61  GGGANLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 120

Query: 121 LRDITAVVRAIERTRARMKENKGPGSDISPAPSDERVLEAS-----------IFLVTPKA 180
           LRDITAVVRAIERTRAR++EN+G GSD SPAPSDER LE S           I L+TPK 
Sbjct: 121 LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP 180

Query: 181 TIGKVPKILRGITNQNVGGAETLTPQNKLLNSIDKVEKVVMEELQKLKRTSSAKKAEREK 230
           T+GKVPKILRGI N+N  GAETLTPQ KLLNSIDKVEKVVMEELQKLKRT SAKKAEREK
Sbjct: 181 TVGKVPKILRGIANENTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 240

[Close]

BLAST of CmoCh03G000800 vs. NCBI nr
Match: gi|449464890|ref|XP_004150162.1| (PREDICTED: protein POLYCHOME [Cucumis sativus])

HSP 1 Score: 352.8 bits (904), Expect = 4.4e-94
Identity = 196/249 (78.71%), Postives = 210/249 (84.34%), Query Frame = 1


Query: 1   MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLRTPISRATTTTTDQQRPTN---- 60
           MSE+RDRLERQVD+AEVFAR RSEGILDE+EM +NL+ TPI+RATTT T QQRPTN    
Sbjct: 1   MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRPTNPGPG 60

Query: 61  -----LRRSFGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTP 120
                LRR+FGSPISGGIGRNRFLYR+PVLSREN  AGSSRRSRSRGRNSVLPIWYPRTP
Sbjct: 61  GGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 120

Query: 121 LRDITAVVRAIERTRARMKENKGPGSDISPAPSDERVLEAS-----------IFLVTPKA 180
           LRDITAVVRAIERTRAR++EN+G GSD SPAPSDER LE S           I L+TPK 
Sbjct: 121 LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP 180

Query: 181 TIGKVPKILRGITNQNVGGAETLTPQNKLLNSIDKVEKVVMEELQKLKRTSSAKKAEREK 230
           T+GKVPKILRGI N+N  GAE LTPQ KLLNSIDKVEKVVMEELQKLKRT SAKKAEREK
Sbjct: 181 TVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 240

[Close]

BLAST of CmoCh03G000800 vs. NCBI nr
Match: gi|700198666|gb|KGN53824.1| (hypothetical protein Csa_4G152290 [Cucumis sativus])

HSP 1 Score: 352.8 bits (904), Expect = 4.4e-94
Identity = 196/249 (78.71%), Postives = 210/249 (84.34%), Query Frame = 1


Query: 1   MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLRTPISRATTTTTDQQRPTN---- 60
           MSE+RDRLERQVD+AEVFAR RSEGILDE+EM +NL+ TPI+RATTT T QQRPTN    
Sbjct: 65  MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRPTNPGPG 124

Query: 61  -----LRRSFGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTP 120
                LRR+FGSPISGGIGRNRFLYR+PVLSREN  AGSSRRSRSRGRNSVLPIWYPRTP
Sbjct: 125 GGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 184

Query: 121 LRDITAVVRAIERTRARMKENKGPGSDISPAPSDERVLEAS-----------IFLVTPKA 180
           LRDITAVVRAIERTRAR++EN+G GSD SPAPSDER LE S           I L+TPK 
Sbjct: 185 LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP 244

Query: 181 TIGKVPKILRGITNQNVGGAETLTPQNKLLNSIDKVEKVVMEELQKLKRTSSAKKAEREK 230
           T+GKVPKILRGI N+N  GAE LTPQ KLLNSIDKVEKVVMEELQKLKRT SAKKAEREK
Sbjct: 245 TVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 304

[Close]

BLAST of CmoCh03G000800 vs. NCBI nr
Match: gi|1009106074|ref|XP_015868489.1| (PREDICTED: protein POLYCHOME-like [Ziziphus jujuba])

HSP 1 Score: 203.4 bits (516), Expect = 4.3e-49
Identity = 130/260 (50.00%), Postives = 157/260 (60.38%), Query Frame = 1


Query: 1   MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLRTPISRATTTTTDQQRPTNLRRS 60
           M E RDRL R VD A VF RWRS G+++E + +++L  +P+ + TT TT   R       
Sbjct: 1   MPEPRDRLSRPVDVAAVFVRWRSRGVVNESDAASDLFGSPMRQQTTATTPIARRVT---G 60

Query: 61  FGSPISGGIGRNRFLYRSPV------------LSRENAVAGSSRRSRSRGRNSVLPIWYP 120
           FG+   GG GR  F     V             +REN  AG++RR R R  NSVLP WYP
Sbjct: 61  FGATRGGGFGRGIFGTPRTVNRRGRNRPGSSSAARENTPAGTARRGRGRVTNSVLPSWYP 120

Query: 121 RTPLRDITAVVRAIERTRARMKENKG---------------PGSDISPAPSDERVLEASI 180
           RTPLRDITA+V AIER RAR++ ++G               P   +SPAP ++ +  AS 
Sbjct: 121 RTPLRDITAIVTAIERRRARLRGDEGLQVETPIYQDPGVLDPPVSVSPAPLEQDIPIASP 180

Query: 181 FLVTPKA----TIGKVPKILRGITNQNVGGAETLTPQNKLLNSIDKVEKVVMEELQKLKR 230
                K     ++GKVPKIL GITNQ  G +E LTPQ KLLN+ID VEK V EELQKLKR
Sbjct: 181 STAVRKKGCPPSVGKVPKILLGITNQTTGESECLTPQKKLLNNIDTVEKAVKEELQKLKR 240

[Close]

BLAST of CmoCh03G000800 vs. NCBI nr
Match: gi|225441692|ref|XP_002277253.1| (PREDICTED: protein POLYCHOME [Vitis vinifera])

HSP 1 Score: 198.4 bits (503), Expect = 1.4e-47
Identity = 141/267 (52.81%), Postives = 161/267 (60.30%), Query Frame = 1


Query: 1   MSESRDRLERQVDHAEVFARWRSE--GIL-DEKEMSTNLLRTPISRATTTTTDQ---QRP 60
           M ESRDRL R  D AE+F R RS   GIL D  E S+NL  +P  R TTT T     +  
Sbjct: 1   MPESRDRLSRPEDIAELFLRRRSGILGILADGSERSSNLFASPSRRETTTRTTTLGARGA 60

Query: 61  TNL---------RRSFGSP-ISGGIGRNRFLYRSPVLSRENAVA-GSSRRSRSRGRNSVL 120
           T +         R  FG+P I  G GR R +YRSP+  REN  A GS RR R R  NSVL
Sbjct: 61  TGILASRGGGVGRGGFGTPRIGTGRGRGRAVYRSPLFGRENTPATGSGRRGRGRSGNSVL 120

Query: 121 PIWYPRTPLRDITAVVRAIERTRARMKENKGPGSDISPAPSD------------ERVLEA 180
           P WYPRTPLRDIT VVRAIER RAR++E  G   DI P P D               LE 
Sbjct: 121 PSWYPRTPLRDITHVVRAIERRRARLREIDGQQIDI-PIPQDISDVHDPILPPSSAQLEQ 180

Query: 181 SIFLVTPKAT---------IGKVPKILRGITNQNVGGAETLTPQNKLLNSIDKVEKVVME 230
            I +++P  T         +GKVPKIL  IT+Q  GG++ LTPQ KLLNSID VEK VM+
Sbjct: 181 DISMISPSPTSGMKLVPKAVGKVPKILLDITDQTGGGSDFLTPQKKLLNSIDTVEKAVMD 240

The following BLAST results are available for this feature:

BLAST of CmoCh03G000800 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PYM_ARATH	1.0e-45	49.62	Protein POLYCHOME OS=Arabidopsis thaliana GN=PYM PE=1 SV=1	[more]
GIG1_ARATH	2.7e-27	41.34	Protein GIGAS CELL1 OS=Arabidopsis thaliana GN=GIG1 PE=1 SV=1	[more]

BLAST of CmoCh03G000800 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KY99_CUCSA	3.1e-94	78.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G152290 PE=4 SV=1	[more]
F6HL68_VITVI	9.7e-48	52.81	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g07790 PE=4 SV=...	[more]
A0A061EX89_THECC	1.0e-44	52.71	Uv-b-insensitive 4, putative OS=Theobroma cacao GN=TCM_024844 PE=4 SV=1	[more]
D7LI35_ARALL	4.2e-43	48.66	Polychome, UV-B-insensitive 4 OS=Arabidopsis lyrata subsp. lyrata GN=UVI4 PE=4 S...	[more]
V4LQQ2_EUTSA	1.0e-41	49.60	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10017150mg PE=4 SV=1	[more]

BLAST of CmoCh03G000800 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G42260.1	5.6e-47	49.62	uv-b-insensitive 4	[more]
AT3G57860.1	1.5e-28	41.34	UV-B-insensitive 4-like	[more]

BLAST of CmoCh03G000800 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659121757\|ref\|XP_008460799.1\|	8.9e-95	79.12	PREDICTED: protein POLYCHOME [Cucumis melo]	[more]
gi\|449464890\|ref\|XP_004150162.1\|	4.4e-94	78.71	PREDICTED: protein POLYCHOME [Cucumis sativus]	[more]
gi\|700198666\|gb\|KGN53824.1\|	4.4e-94	78.71	hypothetical protein Csa_4G152290 [Cucumis sativus]	[more]
gi\|1009106074\|ref\|XP_015868489.1\|	4.3e-49	50.00	PREDICTED: protein POLYCHOME-like [Ziziphus jujuba]	[more]
gi\|225441692\|ref\|XP_002277253.1\|	1.4e-47	52.81	PREDICTED: protein POLYCHOME [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0042023	DNA endoreduplication
biological_process	GO:0009960	endosperm development
biological_process	GO:0009561	megagametogenesis
biological_process	GO:1900426	positive regulation of defense response to bacterium
biological_process	GO:0051783	regulation of nuclear division
biological_process	GO:0010224	response to UV-B
biological_process	GO:0010091	trichome branching
biological_process	GO:1904667	negative regulation of ubiquitin protein ligase activity
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh03G000800.1	CmoCh03G000800.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35119	FAMILY NOT NAMED	coord: 1..33 score: 7.9E-39coord: 61..229 score: 7.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh03G000800	CmaCh03G000790	Cucurbita maxima (Rimu)	cmacmoB654
CmoCh03G000800	Cla000743	Watermelon (97103) v1	cmowmB634
CmoCh03G000800	Csa4G152290	Cucumber (Chinese Long) v2	cmocuB662
CmoCh03G000800	MELO3C023180	Melon (DHL92) v3.5.1	cmomeB601
CmoCh03G000800	ClCG04G000340	Watermelon (Charleston Gray)	cmowcgB585
CmoCh03G000800	CSPI04G10380	Wild cucumber (PI 183967)	cmocpiB674
CmoCh03G000800	Lsi01G018920	Bottle gourd (USVL1VR-Ls)	cmolsiB583
CmoCh03G000800	Cp4.1LG10g11700	Cucurbita pepo (Zucchini)	cmocpeB606
CmoCh03G000800	MELO3C023180.2	Melon (DHL92) v3.6.1	cmomedB699
CmoCh03G000800	CsaV3_4G010540	Cucumber (Chinese Long) v3	cmocucB0786
CmoCh03G000800	Cla97C04G068720	Watermelon (97103) v2	cmowmbB658
CmoCh03G000800	Bhi03G002127	Wax gourd	cmowgoB0799
CmoCh03G000800	CsGy4G010070	Cucumber (Gy14) v2	cgybcmoB513
CmoCh03G000800	Carg12737	Silver-seed gourd	carcmoB0394
CmoCh03G000800	Carg22466	Silver-seed gourd	carcmoB0273

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh03G000800	CmoCh07G013590	Cucurbita moschata (Rifu)	cmocmoB461

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh03G000800	Cucumber (Chinese Long) v3	cmocucB0776
CmoCh03G000800	Wax gourd	cmowgoB0788
CmoCh03G000800	Cucurbita maxima (Rimu)	cmacmoB863
CmoCh03G000800	Wild cucumber (PI 183967)	cmocpiB665
CmoCh03G000800	Cucumber (Chinese Long) v2	cmocuB654
CmoCh03G000800	Melon (DHL92) v3.5.1	cmomeB609
CmoCh03G000800	Watermelon (97103) v1	cmowmB627
CmoCh03G000800	Cucurbita pepo (Zucchini)	cmocpeB620
CmoCh03G000800	Cucumber (Gy14) v2	cgybcmoB503
CmoCh03G000800	Melon (DHL92) v3.6.1	cmomedB691