CmoCh03G000800.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh03G000800.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Uv-b-insensitive 4, putative
Location	Cmo_Chr03 : 1216945 .. 1219790 (-)
Sequence length	1017

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTTATATTAGGGCTTCTCTTGTTTTCTTTTTCTTTGAAATGATTGTTTTCTTGTCGTTTCCTTTTGAAGTTCCATAATGTCGGAATCAAGAGATAGATTGGAGAGGCAAGTAGATCATGCCGAGGTATTTGCTCGTTGGAGATCGGAAGGTATATTGGATGAGAAAGAAATGAGTACTAATTTGTTAAGGACTCCGATTTCTCGCGCCACAACGACGACTACAGATCAACAAAGACCTACGAATCTGAGACGCAGTTTTGGTTCTCCCATTTCTGGTGGAATTGGGCGAAATAGATTTCTCTACAGATCTCCTGTGTTGAGCCGCGAGAATGCGGTGGCTGGGAGCTCCCGGCGGAGTAGATCTCGGGGGAGGAATAGTGTGTTACCGATTTGGTATCCAAGAACTCCTCTCCGCGACATAACTGCAGTTGTGAGGGTAAATGACTAATCCCGTTACTTTGTTTTTGTTCTGCTAAAATCTTTCAATATTTTGTTCTGTTCTGCGTATAATTTTGTGGATTACTTGGATGTAGTATCCAGTGAATTTGATTCATATGATATATGGAAAATTCACTCTCATTGTTATTGCATATGGTCTCTGGTATTATATTGTTCTCTGATACAGTATACTTGTTTGGAGTCATTCAAAATTGAATTTGCTTGATCTTCGGGAAAGATCCTTTTGATTTTCTGGTGTAGTTGTTATTCTTGTTTCTGTTTTTCAGTTGGTAGCATTAGGTTTGATTTGATTTGAATCGATTTTCGACTGAAAATGTTAATGCTATCTCTAATTCTTTTAGTGAATTCTTAGGTTGGATCACTTTCCTTTTTCTTTAAGTTAATTAATCAATAAATTTTCAGTGCTTTTAAGCTATGTTCTACCAACCTGTTTGTCTAAAAAGAAGATTCTTTTGGTTTTGTAACGTCCATGCCCAATGATTTCATATGAAACATCAACAGTCTGGATAATGAGATCCTGTCCACCATTAATTAAAGCTATCATAATGCTCCTTTTTTGGTATTAATTAATTATTTTTTTCTTTGATTCTAATTGTTTTTTAGGCTTCATTTTCACCTGTTTTTAGAACTACTTTTTGGTGGGCTCAAATATGCTTTGGCTGGTTACTAGTATGTGTTGACTTGATACCCAATGATCATTTTGGCCCTATGTGAAAGCTGTAATTTGGATGTAAAAAATACACATACACAAGCAATAATAGTTTAACATTCTGATTGAAATACATATTAACACTGATATTATCATTTCCTTGTGGGACGTTTATAATGCTTATTAAACATGTGTTTGATACTTGTGAATGGGCCAAAACCCTAATGGGCTTCCTTCATAAAATCGTGTGCTCGCTTCTGGGTGTTATTTCTATCGGAATTCGTAGCTCAATTTGTGTTCTCCAAGCAAATGATCTTAGTAATGTAGAAAAATAGATGCATGGTTTTTAAAAATGTATGCTTTTTGTGACCTCATTTTCCAGCAAATATCTTATCGAGGTATAAATGCATCGCACCTTCACTATGTCACGTGCTTGTGTTTGTGCATCATTCATCTAGAATCTTCCCATCTCTGTAAGTTGGTTCCCTGATATTTTTGCTGTCTATGGGGAATATTTCCCCATCTTTTCACGTCTTTCGGGATCTTTTCAGTCTTTCGGGATGTTAATGAGTAGCTACAATAGTTTAAGCTCACCACTAGTTGATATTATCTTTTTTGTGCTCTCTTCAAGATCATTCCCCTCAAGATTTTAAAACGCATCTACTAGGGAGCGGTTTCCACCTCTTATAAAGGAATATTTTGTTCCCTCTCCAACCAATGTGAATGGGATCTCACAATTCAGCCCCTTGTGGAACAACGTCCTTGTTGTCACATTGCGTGGTGTCTTTCTCTGATATCATTTATAACAACACAAGCTCACTGCCAATAGATATTATCTGCTTTGGCCTAGTACAAATGGTATCAAAGTTAGACATCAAGCGACGTGCTAGTGAGGACGTTGGGCCCCCAAAAGAGATGGATTATGAGATCCCATATTGGTTGGAGAGGGGGAAGGAACGAAGCATTTTTCATAAGAGTGAAGAAACCTCCCTCTAGTAAATGCGTTCTAAAATTGTGAGACTAACGACGATACGTAACAACCCAAGCTAACAATATCTATTAGTAATGGGTTCAATAGTGAATTGTCGCTCATGCTTTTATATATGTTCTTCAGATTCCCATTTTTATAGTTTTCAACTTATTTTGCTTTTAATCAGGCAATTGAAAGAACAAGAGCTCGCATGAAAGAAAACAAAGGCCCAGGAAGTGATATTAGTCCTGCTCCCTCGGACGAAAGAGTTTTAGAGGCAAGCATTTTTCTGGTCACCCCAAAGGCAACCATAGGCAAAGTGCCAAAGATTCTTCGTGGAATCACAAATCAAAACGTGGGAGGGGCAGAGACTCTGACTCCCCAGAATAAGCTTTTGAACTCCATAGACAAGGTGGAGAAAGTAGTAATGGAGGAGCTGCAGAAATTGAAAAGGACAAGCAGTGCGAAGAAAGCAGAGAGGGAGAAAAGAGTTCGCACTTTAATGTCATTTCGTTGATTCAGTTCAACAAAGACACGCCCAGAATTAGACAACGCCCACATCAAAGTCCAAACTCCTTCCCCCTCTTTGCCCTCTTGGCAATGGCAATCATCAGACTCACTCAGAATTTGGATCAACCATCTGCTGATGATTGCTTTGGTCAAGAACGCTCGTTGATCAGAGGGAAGGAGAAAGAGATCATCAGACTCACTCAGAATTTGAATCCTTTTCATTTGCAAGAACCATCTTTGCTTTTAGATGTTTAATA

mRNA sequence

AGTTATATTAGGGCTTCTCTTGTTTTCTTTTTCTTTGAAATGATTGTTTTCTTGTCGTTTCCTTTTGAAGTTCCATAATGTCGGAATCAAGAGATAGATTGGAGAGGCAAGTAGATCATGCCGAGGTATTTGCTCGTTGGAGATCGGAAGGTATATTGGATGAGAAAGAAATGAGTACTAATTTGTTAAGGACTCCGATTTCTCGCGCCACAACGACGACTACAGATCAACAAAGACCTACGAATCTGAGACGCAGTTTTGGTTCTCCCATTTCTGGTGGAATTGGGCGAAATAGATTTCTCTACAGATCTCCTGTGTTGAGCCGCGAGAATGCGGTGGCTGGGAGCTCCCGGCGGAGTAGATCTCGGGGGAGGAATAGTGTGTTACCGATTTGGTATCCAAGAACTCCTCTCCGCGACATAACTGCAGTTGTGAGGGCAATTGAAAGAACAAGAGCTCGCATGAAAGAAAACAAAGGCCCAGGAAGTGATATTAGTCCTGCTCCCTCGGACGAAAGAGTTTTAGAGGCAAGCATTTTTCTGGTCACCCCAAAGGCAACCATAGGCAAAGTGCCAAAGATTCTTCGTGGAATCACAAATCAAAACGTGGGAGGGGCAGAGACTCTGACTCCCCAGAATAAGCTTTTGAACTCCATAGACAAGGTGGAGAAAGTAGTAATGGAGGAGCTGCAGAAATTGAAAAGGACAAGCAGTGCGAAGAAAGCAGAGAGGGAGAAAAGAGTTCGCACTTTAATGTCATTTCGTTGATTCAGTTCAACAAAGACACGCCCAGAATTAGACAACGCCCACATCAAAGTCCAAACTCCTTCCCCCTCTTTGCCCTCTTGGCAATGGCAATCATCAGACTCACTCAGAATTTGGATCAACCATCTGCTGATGATTGCTTTGGTCAAGAACGCTCGTTGATCAGAGGGAAGGAGAAAGAGATCATCAGACTCACTCAGAATTTGAATCCTTTTCATTTGCAAGAACCATCTTTGCTTTTAGATGTTTAATA

Coding sequence (CDS)

ATGTCGGAATCAAGAGATAGATTGGAGAGGCAAGTAGATCATGCCGAGGTATTTGCTCGTTGGAGATCGGAAGGTATATTGGATGAGAAAGAAATGAGTACTAATTTGTTAAGGACTCCGATTTCTCGCGCCACAACGACGACTACAGATCAACAAAGACCTACGAATCTGAGACGCAGTTTTGGTTCTCCCATTTCTGGTGGAATTGGGCGAAATAGATTTCTCTACAGATCTCCTGTGTTGAGCCGCGAGAATGCGGTGGCTGGGAGCTCCCGGCGGAGTAGATCTCGGGGGAGGAATAGTGTGTTACCGATTTGGTATCCAAGAACTCCTCTCCGCGACATAACTGCAGTTGTGAGGGCAATTGAAAGAACAAGAGCTCGCATGAAAGAAAACAAAGGCCCAGGAAGTGATATTAGTCCTGCTCCCTCGGACGAAAGAGTTTTAGAGGCAAGCATTTTTCTGGTCACCCCAAAGGCAACCATAGGCAAAGTGCCAAAGATTCTTCGTGGAATCACAAATCAAAACGTGGGAGGGGCAGAGACTCTGACTCCCCAGAATAAGCTTTTGAACTCCATAGACAAGGTGGAGAAAGTAGTAATGGAGGAGCTGCAGAAATTGAAAAGGACAAGCAGTGCGAAGAAAGCAGAGAGGGAGAAAAGAGTTCGCACTTTAATGTCATTTCGTTGA

Homology

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BLAST of CmoCh03G000800.1 vs. Swiss-Prot
Match: PYM_ARATH (Protein POLYCHOME OS=Arabidopsis thaliana GN=PYM PE=1 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.0e-45
Identity = 130/262 (49.62%), Postives = 156/262 (59.54%), Query Frame = 1


Query: 1   MSESRDRLERQVDHAEVFARWRSEGIL-DEKEMSTNLLRTPISRATTTTTD--------- 60
           M E+RDR+ERQVD+   F   RS GIL DE     NL  +P+ R  +  T          
Sbjct: 1   MPEARDRIERQVDYPAAFLNRRSHGILLDEPATQHNLFGSPVQRVPSEATGGLGSIGQGS 60

Query: 61  -QQRPTNLRRSFGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPR 120
              R   +R +FG   +GG  R +  +RSP   REN   G +RR R+R  NSVLP WYPR
Sbjct: 61  MTGRGGLVRGNFGIRRTGGGRRGQIQFRSPQ-GRENMSLGVTRRGRARASNSVLPSWYPR 120

Query: 121 TPLRDITAVVRAIERTRARMKENKGPGSDI-SPAPSDERVLEASIFL-----------VT 180
           TPLRDI+AVVRAIER RARM E  G G DI +P P    VL++ + L           VT
Sbjct: 121 TPLRDISAVVRAIERRRARMGE--GVGRDIETPTPQQLGVLDSLVPLSGAHLEHDYSMVT 180

Query: 181 PKATIG----------KVPKILRGITNQNVGGAETLTPQNKLLNSIDKVEKVVMEELQKL 230
           P  +IG          KV +IL  IT +N G  + LTP+ KLLNSIDKVEKVVMEE+QK+
Sbjct: 181 PGPSIGFKRPWPPSTAKVHQILLDITRENTGEEDALTPEKKLLNSIDKVEKVVMEEIQKM 240

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BLAST of CmoCh03G000800.1 vs. Swiss-Prot
Match: GIG1_ARATH (Protein GIGAS CELL1 OS=Arabidopsis thaliana GN=GIG1 PE=1 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.7e-27
Identity = 105/254 (41.34%), Postives = 134/254 (52.76%), Query Frame = 1


Query: 1   MSESRDRLERQVDHAEVFARWRSEGIL-DEKEMSTNLLRTPISRATTTTTDQQRPTNLRR 60
           M E+RDR ER VD++ +FA  R  GIL DE +   +L+ +P++    +            
Sbjct: 1   MPEARDRTERPVDYSTIFANRRRHGILLDEPDSRLSLIESPVNPDIGSIGGTGGLVRGNF 60

Query: 61  SFGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTPLRDITAVV 120
           +   P +G  G   F  R P   REN    ++RR R  G   +LP WYPRTPLRDIT +V
Sbjct: 61  TTWRPGNGRGGHTPF--RLPQ-GRENMPIVTARRGRGGG---LLPSWYPRTPLRDITHIV 120

Query: 121 RAIERTRARMKENKGPGSDIS-----PAPSDERVLEASIFL--------VTPKATIG--- 180
           RAIER R       G G D       P      VLE+ + L        VTP  ++G   
Sbjct: 121 RAIERRRGA-----GTGGDDGRVIEIPTHRQVGVLESPVPLSGEHKCSMVTPGPSVGFKR 180

Query: 181 -------KVPKILRGITNQNVGG-AETLTPQNKLLNSIDKVEKVVMEELQKLKRTSSAKK 230
                  KV K+L  IT +     A  +TP+ KLLNSIDKVEK+VM E+QKLK T  AK+
Sbjct: 181 SCPPSTAKVQKMLLDITKEIAEEEAGFITPEKKLLNSIDKVEKIVMAEIQKLKSTPQAKR 240

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BLAST of CmoCh03G000800.1 vs. TrEMBL
Match: A0A0A0KY99_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G152290 PE=4 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 3.1e-94
Identity = 196/249 (78.71%), Postives = 210/249 (84.34%), Query Frame = 1


Query: 1   MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLRTPISRATTTTTDQQRPTN---- 60
           MSE+RDRLERQVD+AEVFAR RSEGILDE+EM +NL+ TPI+RATTT T QQRPTN    
Sbjct: 65  MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRPTNPGPG 124

Query: 61  -----LRRSFGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTP 120
                LRR+FGSPISGGIGRNRFLYR+PVLSREN  AGSSRRSRSRGRNSVLPIWYPRTP
Sbjct: 125 GGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 184

Query: 121 LRDITAVVRAIERTRARMKENKGPGSDISPAPSDERVLEAS-----------IFLVTPKA 180
           LRDITAVVRAIERTRAR++EN+G GSD SPAPSDER LE S           I L+TPK 
Sbjct: 185 LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP 244

Query: 181 TIGKVPKILRGITNQNVGGAETLTPQNKLLNSIDKVEKVVMEELQKLKRTSSAKKAEREK 230
           T+GKVPKILRGI N+N  GAE LTPQ KLLNSIDKVEKVVMEELQKLKRT SAKKAEREK
Sbjct: 245 TVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 304

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BLAST of CmoCh03G000800.1 vs. TrEMBL
Match: F6HL68_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g07790 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 9.7e-48
Identity = 141/267 (52.81%), Postives = 161/267 (60.30%), Query Frame = 1


Query: 1   MSESRDRLERQVDHAEVFARWRSE--GIL-DEKEMSTNLLRTPISRATTTTTDQ---QRP 60
           M ESRDRL R  D AE+F R RS   GIL D  E S+NL  +P  R TTT T     +  
Sbjct: 1   MPESRDRLSRPEDIAELFLRRRSGILGILADGSERSSNLFASPSRRETTTRTTTLGARGA 60

Query: 61  TNL---------RRSFGSP-ISGGIGRNRFLYRSPVLSRENAVA-GSSRRSRSRGRNSVL 120
           T +         R  FG+P I  G GR R +YRSP+  REN  A GS RR R R  NSVL
Sbjct: 61  TGILASRGGGVGRGGFGTPRIGTGRGRGRAVYRSPLFGRENTPATGSGRRGRGRSGNSVL 120

Query: 121 PIWYPRTPLRDITAVVRAIERTRARMKENKGPGSDISPAPSD------------ERVLEA 180
           P WYPRTPLRDIT VVRAIER RAR++E  G   DI P P D               LE 
Sbjct: 121 PSWYPRTPLRDITHVVRAIERRRARLREIDGQQIDI-PIPQDISDVHDPILPPSSAQLEQ 180

Query: 181 SIFLVTPKAT---------IGKVPKILRGITNQNVGGAETLTPQNKLLNSIDKVEKVVME 230
            I +++P  T         +GKVPKIL  IT+Q  GG++ LTPQ KLLNSID VEK VM+
Sbjct: 181 DISMISPSPTSGMKLVPKAVGKVPKILLDITDQTGGGSDFLTPQKKLLNSIDTVEKAVMD 240

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BLAST of CmoCh03G000800.1 vs. TrEMBL
Match: A0A061EX89_THECC (Uv-b-insensitive 4, putative OS=Theobroma cacao GN=TCM_024844 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.0e-44
Identity = 136/258 (52.71%), Postives = 159/258 (61.63%), Query Frame = 1


Query: 1   MSESRDRLERQVDHAEVFARWRSE--GILDEKEMSTNLLRTPISRATT-------TTTDQ 60
           M++SRDR+ R VD AEVFAR RS   GIL ++  +  LL +P+ R  T        TT  
Sbjct: 1   MADSRDRITRAVDIAEVFARRRSGPLGILSDE--AQELLASPVQRPVTRRPMGVAVTTST 60

Query: 61  QRPTNLRR--SFGSPISG-GIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYP 120
            R   LRR  SFG+P SG  IGRN  LYRSP   RENA  G   R R R   SVLP WYP
Sbjct: 61  SRGGGLRRGSSFGTPRSGIRIGRN--LYRSPAPGRENAPMGVMGRGRGRLTGSVLPSWYP 120

Query: 121 RTPLRDITAVVRAIERTRARMKENKGPGSDISPAPSDERVLEASIF--------LVTPKA 180
           RTPLRDITAVVRAIER RAR+ E +    + SP   DERVL +++           TP +
Sbjct: 121 RTPLRDITAVVRAIERRRARLGEGERQILE-SPTSQDERVLNSNLSSGVQLEHNFSTPAS 180

Query: 181 T---------IGKVPKILRGITNQNVGGAETLTPQNKLLNSIDKVEKVVMEELQKLKRTS 230
           T         +  V KIL  +TNQN   +E LTPQ KLLNSID VEK V+EELQK+KRT 
Sbjct: 181 TARMKPCPQSVRNVSKILLNVTNQNGEESEILTPQKKLLNSIDTVEKAVLEELQKMKRTP 240

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BLAST of CmoCh03G000800.1 vs. TrEMBL
Match: D7LI35_ARALL (Polychome, UV-B-insensitive 4 OS=Arabidopsis lyrata subsp. lyrata GN=UVI4 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 4.2e-43
Identity = 127/261 (48.66%), Postives = 155/261 (59.39%), Query Frame = 1


Query: 1   MSESRDRLERQVDHAEVFARWRSEGIL-DEKEMSTNLLRTPISRATTTTTD--------- 60
           M E+RDR+ER VD+   F   RS GIL DE     NL  +P+ R  +  T          
Sbjct: 1   MPEARDRIERPVDYPAAFLNRRSHGILLDEPATHHNLFGSPVQRVPSEATGLGSVGQGSM 60

Query: 61  QQRPTNLRRSFGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRT 120
             R   +R +FG   +GG  R +  +RSP   REN   G +RR R+R  NSVLP WYPRT
Sbjct: 61  MGRGGLVRGNFGIRRTGGGRRGQIQFRSPQ-GRENMSLGVTRRGRARASNSVLPSWYPRT 120

Query: 121 PLRDITAVVRAIERTRARMKENKGPGSDI-SPAPSDERVLEASIFL-----------VTP 180
           PLRD++AVVRA+ER RARM E  G G DI +P P    VL++ + L           VTP
Sbjct: 121 PLRDVSAVVRAVERRRARMGE--GVGRDIETPTPQQLGVLDSLVPLSGAQLEHDYSMVTP 180

Query: 181 KATIG----------KVPKILRGITNQNVGGAETLTPQNKLLNSIDKVEKVVMEELQKLK 230
             ++G          KV +IL  IT +N G  + LTPQ KLLNSIDKVEKVVMEE+QK+K
Sbjct: 181 GPSVGFKRPWPPSTAKVHQILLDITRENTGEEDALTPQKKLLNSIDKVEKVVMEEIQKMK 240

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BLAST of CmoCh03G000800.1 vs. TrEMBL
Match: V4LQQ2_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10017150mg PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.0e-41
Identity = 125/252 (49.60%), Postives = 153/252 (60.71%), Query Frame = 1


Query: 1   MSESRDRLERQVDHAEVFARWRSEGIL-DEKEMSTNLLRTPISRATTTTTDQQRPTNLRR 60
           M E+RDR+ER VD+   F   RS GIL D+     +L  +P+ R  +      R   +R 
Sbjct: 1   MPEARDRIERPVDYPAAFLSRRSNGILHDDPVTQHSLFGSPVQRVPSEPVIG-RGGLVRG 60

Query: 61  SFGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTPLRDITAVV 120
           +FG   +GG  R +  +RSP   REN   G +RR R+R   SVLP WYPRTPLRD++ VV
Sbjct: 61  NFGIRRTGGGRRGQTQFRSPQ-GRENMSLGVARRGRARASTSVLPSWYPRTPLRDVSGVV 120

Query: 121 RAIERTRARMKENKGPGSDI-SPAPSDERVLEASIFL-----------VTPKATIG---- 180
           RAIER RARM E  G G DI +P P    VL++ + L           VTP  ++G    
Sbjct: 121 RAIERRRARMGE--GVGRDIETPTPQQLGVLDSLVPLSGAQLEHNYSMVTPGPSVGFKRP 180

Query: 181 ------KVPKILRGITNQNVGGAETLTPQNKLLNSIDKVEKVVMEELQKLKRTSSAKKAE 230
                 KV KIL  IT +N G  E+LTPQ KLLNSIDKVEKVVMEE+QK+K T SAK+AE
Sbjct: 181 WPPSAAKVHKILLDITRENTGEEESLTPQKKLLNSIDKVEKVVMEEIQKMKSTPSAKRAE 240

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BLAST of CmoCh03G000800.1 vs. TAIR10
Match: AT2G42260.1 (AT2G42260.1 uv-b-insensitive 4)

HSP 1 Score: 184.9 bits (468), Expect = 5.6e-47
Identity = 130/262 (49.62%), Postives = 156/262 (59.54%), Query Frame = 1


Query: 1   MSESRDRLERQVDHAEVFARWRSEGIL-DEKEMSTNLLRTPISRATTTTTD--------- 60
           M E+RDR+ERQVD+   F   RS GIL DE     NL  +P+ R  +  T          
Sbjct: 1   MPEARDRIERQVDYPAAFLNRRSHGILLDEPATQHNLFGSPVQRVPSEATGGLGSIGQGS 60

Query: 61  -QQRPTNLRRSFGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPR 120
              R   +R +FG   +GG  R +  +RSP   REN   G +RR R+R  NSVLP WYPR
Sbjct: 61  MTGRGGLVRGNFGIRRTGGGRRGQIQFRSPQ-GRENMSLGVTRRGRARASNSVLPSWYPR 120

Query: 121 TPLRDITAVVRAIERTRARMKENKGPGSDI-SPAPSDERVLEASIFL-----------VT 180
           TPLRDI+AVVRAIER RARM E  G G DI +P P    VL++ + L           VT
Sbjct: 121 TPLRDISAVVRAIERRRARMGE--GVGRDIETPTPQQLGVLDSLVPLSGAHLEHDYSMVT 180

Query: 181 PKATIG----------KVPKILRGITNQNVGGAETLTPQNKLLNSIDKVEKVVMEELQKL 230
           P  +IG          KV +IL  IT +N G  + LTP+ KLLNSIDKVEKVVMEE+QK+
Sbjct: 181 PGPSIGFKRPWPPSTAKVHQILLDITRENTGEEDALTPEKKLLNSIDKVEKVVMEEIQKM 240

[Close]

BLAST of CmoCh03G000800.1 vs. TAIR10
Match: AT3G57860.1 (AT3G57860.1 UV-B-insensitive 4-like)

HSP 1 Score: 123.6 bits (309), Expect = 1.5e-28
Identity = 105/254 (41.34%), Postives = 134/254 (52.76%), Query Frame = 1


Query: 1   MSESRDRLERQVDHAEVFARWRSEGIL-DEKEMSTNLLRTPISRATTTTTDQQRPTNLRR 60
           M E+RDR ER VD++ +FA  R  GIL DE +   +L+ +P++    +            
Sbjct: 1   MPEARDRTERPVDYSTIFANRRRHGILLDEPDSRLSLIESPVNPDIGSIGGTGGLVRGNF 60

Query: 61  SFGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTPLRDITAVV 120
           +   P +G  G   F  R P   REN    ++RR R  G   +LP WYPRTPLRDIT +V
Sbjct: 61  TTWRPGNGRGGHTPF--RLPQ-GRENMPIVTARRGRGGG---LLPSWYPRTPLRDITHIV 120

Query: 121 RAIERTRARMKENKGPGSDIS-----PAPSDERVLEASIFL--------VTPKATIG--- 180
           RAIER R       G G D       P      VLE+ + L        VTP  ++G   
Sbjct: 121 RAIERRRGA-----GTGGDDGRVIEIPTHRQVGVLESPVPLSGEHKCSMVTPGPSVGFKR 180

Query: 181 -------KVPKILRGITNQNVGG-AETLTPQNKLLNSIDKVEKVVMEELQKLKRTSSAKK 230
                  KV K+L  IT +     A  +TP+ KLLNSIDKVEK+VM E+QKLK T  AK+
Sbjct: 181 SCPPSTAKVQKMLLDITKEIAEEEAGFITPEKKLLNSIDKVEKIVMAEIQKLKSTPQAKR 240

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BLAST of CmoCh03G000800.1 vs. NCBI nr
Match: gi|659121757|ref|XP_008460799.1| (PREDICTED: protein POLYCHOME [Cucumis melo])

HSP 1 Score: 355.1 bits (910), Expect = 8.9e-95
Identity = 197/249 (79.12%), Postives = 211/249 (84.74%), Query Frame = 1


Query: 1   MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLRTPISRATTTTTDQQRPTN---- 60
           MSE+RDRLERQVD+AEVFAR RSEGILDE+EM +NL+ TPI+RATTTT  QQRPTN    
Sbjct: 1   MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTTAAQQRPTNPGPG 60

Query: 61  -----LRRSFGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTP 120
                LRR+FGSPISGGIGRNRFLYR+PVLSREN  AGSSRRSRSRGRNSVLPIWYPRTP
Sbjct: 61  GGGANLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 120

Query: 121 LRDITAVVRAIERTRARMKENKGPGSDISPAPSDERVLEAS-----------IFLVTPKA 180
           LRDITAVVRAIERTRAR++EN+G GSD SPAPSDER LE S           I L+TPK 
Sbjct: 121 LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP 180

Query: 181 TIGKVPKILRGITNQNVGGAETLTPQNKLLNSIDKVEKVVMEELQKLKRTSSAKKAEREK 230
           T+GKVPKILRGI N+N  GAETLTPQ KLLNSIDKVEKVVMEELQKLKRT SAKKAEREK
Sbjct: 181 TVGKVPKILRGIANENTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 240

[Close]

BLAST of CmoCh03G000800.1 vs. NCBI nr
Match: gi|449464890|ref|XP_004150162.1| (PREDICTED: protein POLYCHOME [Cucumis sativus])

HSP 1 Score: 352.8 bits (904), Expect = 4.4e-94
Identity = 196/249 (78.71%), Postives = 210/249 (84.34%), Query Frame = 1


Query: 1   MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLRTPISRATTTTTDQQRPTN---- 60
           MSE+RDRLERQVD+AEVFAR RSEGILDE+EM +NL+ TPI+RATTT T QQRPTN    
Sbjct: 1   MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRPTNPGPG 60

Query: 61  -----LRRSFGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTP 120
                LRR+FGSPISGGIGRNRFLYR+PVLSREN  AGSSRRSRSRGRNSVLPIWYPRTP
Sbjct: 61  GGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 120

Query: 121 LRDITAVVRAIERTRARMKENKGPGSDISPAPSDERVLEAS-----------IFLVTPKA 180
           LRDITAVVRAIERTRAR++EN+G GSD SPAPSDER LE S           I L+TPK 
Sbjct: 121 LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP 180

Query: 181 TIGKVPKILRGITNQNVGGAETLTPQNKLLNSIDKVEKVVMEELQKLKRTSSAKKAEREK 230
           T+GKVPKILRGI N+N  GAE LTPQ KLLNSIDKVEKVVMEELQKLKRT SAKKAEREK
Sbjct: 181 TVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 240

[Close]

BLAST of CmoCh03G000800.1 vs. NCBI nr
Match: gi|700198666|gb|KGN53824.1| (hypothetical protein Csa_4G152290 [Cucumis sativus])

HSP 1 Score: 352.8 bits (904), Expect = 4.4e-94
Identity = 196/249 (78.71%), Postives = 210/249 (84.34%), Query Frame = 1


Query: 1   MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLRTPISRATTTTTDQQRPTN---- 60
           MSE+RDRLERQVD+AEVFAR RSEGILDE+EM +NL+ TPI+RATTT T QQRPTN    
Sbjct: 65  MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRPTNPGPG 124

Query: 61  -----LRRSFGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTP 120
                LRR+FGSPISGGIGRNRFLYR+PVLSREN  AGSSRRSRSRGRNSVLPIWYPRTP
Sbjct: 125 GGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 184

Query: 121 LRDITAVVRAIERTRARMKENKGPGSDISPAPSDERVLEAS-----------IFLVTPKA 180
           LRDITAVVRAIERTRAR++EN+G GSD SPAPSDER LE S           I L+TPK 
Sbjct: 185 LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP 244

Query: 181 TIGKVPKILRGITNQNVGGAETLTPQNKLLNSIDKVEKVVMEELQKLKRTSSAKKAEREK 230
           T+GKVPKILRGI N+N  GAE LTPQ KLLNSIDKVEKVVMEELQKLKRT SAKKAEREK
Sbjct: 245 TVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 304

[Close]

BLAST of CmoCh03G000800.1 vs. NCBI nr
Match: gi|1009106074|ref|XP_015868489.1| (PREDICTED: protein POLYCHOME-like [Ziziphus jujuba])

HSP 1 Score: 203.4 bits (516), Expect = 4.3e-49
Identity = 130/260 (50.00%), Postives = 157/260 (60.38%), Query Frame = 1


Query: 1   MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLRTPISRATTTTTDQQRPTNLRRS 60
           M E RDRL R VD A VF RWRS G+++E + +++L  +P+ + TT TT   R       
Sbjct: 1   MPEPRDRLSRPVDVAAVFVRWRSRGVVNESDAASDLFGSPMRQQTTATTPIARRVT---G 60

Query: 61  FGSPISGGIGRNRFLYRSPV------------LSRENAVAGSSRRSRSRGRNSVLPIWYP 120
           FG+   GG GR  F     V             +REN  AG++RR R R  NSVLP WYP
Sbjct: 61  FGATRGGGFGRGIFGTPRTVNRRGRNRPGSSSAARENTPAGTARRGRGRVTNSVLPSWYP 120

Query: 121 RTPLRDITAVVRAIERTRARMKENKG---------------PGSDISPAPSDERVLEASI 180
           RTPLRDITA+V AIER RAR++ ++G               P   +SPAP ++ +  AS 
Sbjct: 121 RTPLRDITAIVTAIERRRARLRGDEGLQVETPIYQDPGVLDPPVSVSPAPLEQDIPIASP 180

Query: 181 FLVTPKA----TIGKVPKILRGITNQNVGGAETLTPQNKLLNSIDKVEKVVMEELQKLKR 230
                K     ++GKVPKIL GITNQ  G +E LTPQ KLLN+ID VEK V EELQKLKR
Sbjct: 181 STAVRKKGCPPSVGKVPKILLGITNQTTGESECLTPQKKLLNNIDTVEKAVKEELQKLKR 240

[Close]

BLAST of CmoCh03G000800.1 vs. NCBI nr
Match: gi|225441692|ref|XP_002277253.1| (PREDICTED: protein POLYCHOME [Vitis vinifera])

HSP 1 Score: 198.4 bits (503), Expect = 1.4e-47
Identity = 141/267 (52.81%), Postives = 161/267 (60.30%), Query Frame = 1


Query: 1   MSESRDRLERQVDHAEVFARWRSE--GIL-DEKEMSTNLLRTPISRATTTTTDQ---QRP 60
           M ESRDRL R  D AE+F R RS   GIL D  E S+NL  +P  R TTT T     +  
Sbjct: 1   MPESRDRLSRPEDIAELFLRRRSGILGILADGSERSSNLFASPSRRETTTRTTTLGARGA 60

Query: 61  TNL---------RRSFGSP-ISGGIGRNRFLYRSPVLSRENAVA-GSSRRSRSRGRNSVL 120
           T +         R  FG+P I  G GR R +YRSP+  REN  A GS RR R R  NSVL
Sbjct: 61  TGILASRGGGVGRGGFGTPRIGTGRGRGRAVYRSPLFGRENTPATGSGRRGRGRSGNSVL 120

Query: 121 PIWYPRTPLRDITAVVRAIERTRARMKENKGPGSDISPAPSD------------ERVLEA 180
           P WYPRTPLRDIT VVRAIER RAR++E  G   DI P P D               LE 
Sbjct: 121 PSWYPRTPLRDITHVVRAIERRRARLREIDGQQIDI-PIPQDISDVHDPILPPSSAQLEQ 180

Query: 181 SIFLVTPKAT---------IGKVPKILRGITNQNVGGAETLTPQNKLLNSIDKVEKVVME 230
            I +++P  T         +GKVPKIL  IT+Q  GG++ LTPQ KLLNSID VEK VM+
Sbjct: 181 DISMISPSPTSGMKLVPKAVGKVPKILLDITDQTGGGSDFLTPQKKLLNSIDTVEKAVMD 240

The following BLAST results are available for this feature:

BLAST of CmoCh03G000800.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PYM_ARATH	1.0e-45	49.62	Protein POLYCHOME OS=Arabidopsis thaliana GN=PYM PE=1 SV=1	[more]
GIG1_ARATH	2.7e-27	41.34	Protein GIGAS CELL1 OS=Arabidopsis thaliana GN=GIG1 PE=1 SV=1	[more]

BLAST of CmoCh03G000800.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KY99_CUCSA	3.1e-94	78.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G152290 PE=4 SV=1	[more]
F6HL68_VITVI	9.7e-48	52.81	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g07790 PE=4 SV=...	[more]
A0A061EX89_THECC	1.0e-44	52.71	Uv-b-insensitive 4, putative OS=Theobroma cacao GN=TCM_024844 PE=4 SV=1	[more]
D7LI35_ARALL	4.2e-43	48.66	Polychome, UV-B-insensitive 4 OS=Arabidopsis lyrata subsp. lyrata GN=UVI4 PE=4 S...	[more]
V4LQQ2_EUTSA	1.0e-41	49.60	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10017150mg PE=4 SV=1	[more]

BLAST of CmoCh03G000800.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G42260.1	5.6e-47	49.62	uv-b-insensitive 4	[more]
AT3G57860.1	1.5e-28	41.34	UV-B-insensitive 4-like	[more]

BLAST of CmoCh03G000800.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659121757\|ref\|XP_008460799.1\|	8.9e-95	79.12	PREDICTED: protein POLYCHOME [Cucumis melo]	[more]
gi\|449464890\|ref\|XP_004150162.1\|	4.4e-94	78.71	PREDICTED: protein POLYCHOME [Cucumis sativus]	[more]
gi\|700198666\|gb\|KGN53824.1\|	4.4e-94	78.71	hypothetical protein Csa_4G152290 [Cucumis sativus]	[more]
gi\|1009106074\|ref\|XP_015868489.1\|	4.3e-49	50.00	PREDICTED: protein POLYCHOME-like [Ziziphus jujuba]	[more]
gi\|225441692\|ref\|XP_002277253.1\|	1.4e-47	52.81	PREDICTED: protein POLYCHOME [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh03G000800	CmoCh03G000800	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh03G000800.1	CmoCh03G000800.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh03G000800.1.three_prime_UTR.1	CmoCh03G000800.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh03G000800.1.CDS.2	CmoCh03G000800.1.CDS.2	CDS
CmoCh03G000800.1.CDS.1	CmoCh03G000800.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh03G000800.1.five_prime_UTR.1	CmoCh03G000800.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh03G000800.1.exon.2	CmoCh03G000800.1.exon.2	exon
CmoCh03G000800.1.exon.1	CmoCh03G000800.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35119	FAMILY NOT NAMED	coord: 1..33 score: 7.9E-39coord: 61..229 score: 7.9