Carg22466 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22466
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	protein POLYCHOME
Location	Cucurbita_argyrosperma_scaffold_152 : 438971 .. 441489 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGAATCAAGAGATAGATTGGAGAGGCAAGTAGATCATGCCGAGGTATTTGCTCGTTGGAGATCGGAAGGTATATTGGATGAGAAAGAAATGAGTACTAATTTGTTAAGGACTCCGATTTCTCGCGCCACAACGACGACTACAGATCAACAAAGACCTACGAATCTGAGACGCAGTTTTGGTTCTCCCATTTCTGGTGGAATTGGGCGAAATAGATTTCTCTACAGATCTCCTGTGTTGAGCCGCGAGAATGCGGTGGCTGGGAGCTCCCGGCGGAGTAGATCTCGGGGGAGGAATAGTGTGTTACCGATTTGGTATCCAAGAACTCCTCTCCGCGACATAACTGCAGTTGTGAGGGTAAATGACTAATCCCGTTACTTTGTTTTTGTTCTGCTAAAATCTTTCAATATTTTGTTCTGTTCTGCGTATAATTTTGTGGATTACTTGGATGTAGTATCCAGTGAATTTGATTCATATGATATATGGAAAATTCACTCTCATTGTTATTGCATATGGTCTCTGGTATTATATTGTTCTCTGATACAGTATACTTGTTTGGAGTCATTCAAAATTGAATTTGCTTGATCTTCGGGAAAGATCCTTTTGATTTTCTGGTGTAGTTGTTATTCTTGTTTCTGTTTTTCAGTTGGTAGCATTAGGTTTGATTTGATTTGAATCGATTTTCGACTGAAAATGTTAATGCTATCTCTAATTCTTTTAGTGAATTCTTAGGTTGGATCACTTTCCTTTTTCTTTAAGTTAATTAATCAATAAATTTTCAGTGCTTTTAAGCTATGTTCTACCAACCTGTTTGTCTAAAAAGAAGATTCTTTTGGTTTTGTAACGTCCATGCCCAATGATTTCATATGAAACATCAACAGTCTGGATAATGAGATCCTGTCCACCATTAATTAAAGCTATCATAATGCTCCTTTTTTGGTATTAATTAATTATTTTTTTCTTTGATTCTAATTGTTTTTTAGGCTTCATTTTCACCTGTTTTTAGAACTACTTTTTGGTGGGCTCAAATATGCTTTGGCTGGTTACTAGTATGTGTTGACTTGATACCCAATGATCATTTTGGCCCTATGTGAAAGCTGTAATTTGGATGTAAAAAATACACATACACAAGCAATAATAGTTTAACATTCTGATTGAAATACATATTAACACTGATATTATCATTTCCTTGTGGGACGTTTATAATGCTTATTAAACATGTGTTTGATACTTGTGAATGGGCCAAAACCCTAATGGGCTTCCTTCATAAAATCGTGTGCTCGCTTCTGGGTGTTATTTCTATCGGAATTCGTAGCTCAATTTGTGTTCTCCAAGCAAATGATCTTAGTAATGTAGAAAAATAGATGCATGGTTTTTAAAAATGTATGCTTTTTGTGACCTCATTTTCCAGCAAATATCTTATCGAGGTATAAATGCATCGCACCTTCACTATGTCACGTGCTTGTGTTTGTGCATCATTCATCTAGAATCTTCCCATCTCTGTAAGTTGGTTCCCTGATATTTTTGCTGTCTATGGGGAATATTTCCCCATCTTTTCACGTCTTTCGGGATCTTTTCAGTCTTTCGGGATGTTAATGAGTAGCTACAATAGTTTAAGCTCACCACTAGTTGATATTATCTTTTTTGTGCTCTCTTCAAGATCATTCCCCTCAAGATTTTAAAACGCATCTACTAGGGAGCGGTTTCCACCTCTTATAAAGGAATATTTTGTTCCCTCTCCAACCAATGTGAATGGGATCTCACAATTCAGCCCCTTGTGGAACAACGTCCTTGTTGTCACATTGCGTGGTGTCTTTCTCTGATATCATTTATAACAACACAAGCTCACTGCCAATAGATATTATCTGCTTTGGCCTAGTACAAATGGTATCAAAGTTAGACATCAAGCGACGTGCTAGTGAGGACGTTGGGCCCCCAAAAGAGATGGATTATGAGATCCCATATTGGTTGGAGAGGGGGAAGGAACGAAGCATTTTTCATAAGAGTGAAGAAACCTCCCTCTAGTAAATGCGTTCTAAAATTGTGAGACTAACGACGATACGTAACAACCCAAGCTAACCATATCTATTAGTAATGGGTTCAATAGTGAATTGTCGCTCATGCTTTTATATATGTTCTTCAGATTCCCATTTTTATAGTTTTCAACTTATTTTGCTTTTAATCAGGCAATTGAAAGAACAAGAGCTCGCATGAAAGAAAACAAAGGCCCAGGAAGTGATATTAGTCCTGCTCCCTCGGACGAAAGAGTTTTAGAGGCAAGCATTTTTCTGGTCACCCCAAAGGCAACCATAGGCAAAGTGCCAAAGATTCTTCGTGGAATCACAAATCAAAACGTGGGAGGGGCAGAGACTCTGACTCCCCAGAATAAGCTTTTGAACTCCATAGACAAGGTGGAGAAAGTAGTAATGGAGGAGCTGCAGAAATTGAAAAGGACAAGCAGTGCGAAGAAAGCAGAGAGGGAGAAAAGAGTTCGCACTTTAATGTCATTTCGTTGA

mRNA sequence

ATGTCGGAATCAAGAGATAGATTGGAGAGGCAAGTAGATCATGCCGAGGTATTTGCTCGTTGGAGATCGGAAGGTATATTGGATGAGAAAGAAATGAGTACTAATTTGTTAAGGACTCCGATTTCTCGCGCCACAACGACGACTACAGATCAACAAAGACCTACGAATCTGAGACGCAGTTTTGGTTCTCCCATTTCTGGTGGAATTGGGCGAAATAGATTTCTCTACAGATCTCCTGTGTTGAGCCGCGAGAATGCGGTGGCTGGGAGCTCCCGGCGGAGTAGATCTCGGGGGAGGAATAGTGTGTTACCGATTTGGTATCCAAGAACTCCTCTCCGCGACATAACTGCAGTTGTGAGGGCAATTGAAAGAACAAGAGCTCGCATGAAAGAAAACAAAGGCCCAGGAAGTGATATTAGTCCTGCTCCCTCGGACGAAAGAGTTTTAGAGGCAAGCATTTTTCTGGTCACCCCAAAGGCAACCATAGGCAAAGTGCCAAAGATTCTTCGTGGAATCACAAATCAAAACGTGGGAGGGGCAGAGACTCTGACTCCCCAGAATAAGCTTTTGAACTCCATAGACAAGGTGGAGAAAGTAGTAATGGAGGAGCTGCAGAAATTGAAAAGGACAAGCAGTGCGAAGAAAGCAGAGAGGGAGAAAAGAGTTCGCACTTTAATGTCATTTCGTTGA

Coding sequence (CDS)

ATGTCGGAATCAAGAGATAGATTGGAGAGGCAAGTAGATCATGCCGAGGTATTTGCTCGTTGGAGATCGGAAGGTATATTGGATGAGAAAGAAATGAGTACTAATTTGTTAAGGACTCCGATTTCTCGCGCCACAACGACGACTACAGATCAACAAAGACCTACGAATCTGAGACGCAGTTTTGGTTCTCCCATTTCTGGTGGAATTGGGCGAAATAGATTTCTCTACAGATCTCCTGTGTTGAGCCGCGAGAATGCGGTGGCTGGGAGCTCCCGGCGGAGTAGATCTCGGGGGAGGAATAGTGTGTTACCGATTTGGTATCCAAGAACTCCTCTCCGCGACATAACTGCAGTTGTGAGGGCAATTGAAAGAACAAGAGCTCGCATGAAAGAAAACAAAGGCCCAGGAAGTGATATTAGTCCTGCTCCCTCGGACGAAAGAGTTTTAGAGGCAAGCATTTTTCTGGTCACCCCAAAGGCAACCATAGGCAAAGTGCCAAAGATTCTTCGTGGAATCACAAATCAAAACGTGGGAGGGGCAGAGACTCTGACTCCCCAGAATAAGCTTTTGAACTCCATAGACAAGGTGGAGAAAGTAGTAATGGAGGAGCTGCAGAAATTGAAAAGGACAAGCAGTGCGAAGAAAGCAGAGAGGGAGAAAAGAGTTCGCACTTTAATGTCATTTCGTTGA

Protein sequence

MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLRTPISRATTTTTDQQRPTNLRRSFGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTPLRDITAVVRAIERTRARMKENKGPGSDISPAPSDERVLEASIFLVTPKATIGKVPKILRGITNQNVGGAETLTPQNKLLNSIDKVEKVVMEELQKLKRTSSAKKAEREKRVRTLMSFR

Homology

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BLAST of Carg22466 vs. NCBI nr
Match: XP_022928675.1 (protein POLYCHOME-like [Cucurbita moschata])

HSP 1 Score: 406.8 bits (1044), Expect = 5.0e-110
Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 0


Query: 1   MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLRTPISRATTTTTDQQRPTNLRRS 60
           MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLRTPISRATTTTTDQQRPTNLRRS
Sbjct: 1   MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLRTPISRATTTTTDQQRPTNLRRS 60

Query: 61  FGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTPLRDITAVVR 120
           FGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTPLRDITAVVR
Sbjct: 61  FGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTPLRDITAVVR 120

Query: 121 AIERTRARMKENKGPGSDISPAPSDERVLEASIFLVTPKATIGKVPKILRGITNQNVGGA 180
           AIERTRARMKENKGPGSDISPAPSDERVLEASIFLVTPKATIGKVPKILRGITNQNVGGA
Sbjct: 121 AIERTRARMKENKGPGSDISPAPSDERVLEASIFLVTPKATIGKVPKILRGITNQNVGGA 180

Query: 181 ETLTPQNKLLNSIDKVEKVVMEXXXXXXXXXXXXXXXREKRVRTLMSFR 230
           ETLTPQNKLLNSIDKVEKVVMEXXXXXXXXXXXXXXXREKRVRTLMSFR
Sbjct: 181 ETLTPQNKLLNSIDKVEKVVMEXXXXXXXXXXXXXXXREKRVRTLMSFR 229

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BLAST of Carg22466 vs. NCBI nr
Match: XP_023543597.1 (protein POLYCHOME-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 399.1 bits (1024), Expect = 1.0e-107
Identity = 226/229 (98.69%), Postives = 226/229 (98.69%), Query Frame = 0


Query: 1   MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLRTPISRATTTTTDQQRPTNLRRS 60
           MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLL TPISRATTTTT QQRPTNLRRS
Sbjct: 1   MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLGTPISRATTTTTVQQRPTNLRRS 60

Query: 61  FGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTPLRDITAVVR 120
           FGSPISGGIGRNRFLYRSPV SRENAVAGSSRRSRSRGRNSVLPIWYPRTPLRDITAVVR
Sbjct: 61  FGSPISGGIGRNRFLYRSPVFSRENAVAGSSRRSRSRGRNSVLPIWYPRTPLRDITAVVR 120

Query: 121 AIERTRARMKENKGPGSDISPAPSDERVLEASIFLVTPKATIGKVPKILRGITNQNVGGA 180
           AIERTRARMKENKGPGSDISPAPSDERVLEASIFLVTPKATIGKVPKILRGITNQNVGGA
Sbjct: 121 AIERTRARMKENKGPGSDISPAPSDERVLEASIFLVTPKATIGKVPKILRGITNQNVGGA 180

Query: 181 ETLTPQNKLLNSIDKVEKVVMEXXXXXXXXXXXXXXXREKRVRTLMSFR 230
           ETLTPQNKLLNSIDKVEKVVMEXXXXXXXXXXXXXXXREKRVRTLMSFR
Sbjct: 181 ETLTPQNKLLNSIDKVEKVVMEXXXXXXXXXXXXXXXREKRVRTLMSFR 229

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BLAST of Carg22466 vs. NCBI nr
Match: XP_022967896.1 (protein POLYCHOME-like [Cucurbita maxima])

HSP 1 Score: 394.8 bits (1013), Expect = 2.0e-106
Identity = 224/229 (97.82%), Postives = 224/229 (97.82%), Query Frame = 0


Query: 1   MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLRTPISRATTTTTDQQRPTNLRRS 60
           MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLL TPISRATTTTT QQRPTNLRRS
Sbjct: 1   MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLGTPISRATTTTTAQQRPTNLRRS 60

Query: 61  FGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTPLRDITAVVR 120
           FGSPISGGIGRNRFLYRSP LSRENAVAG SRRSRSRGRNSVLPIWYPRTPLRDITAVVR
Sbjct: 61  FGSPISGGIGRNRFLYRSPALSRENAVAGISRRSRSRGRNSVLPIWYPRTPLRDITAVVR 120

Query: 121 AIERTRARMKENKGPGSDISPAPSDERVLEASIFLVTPKATIGKVPKILRGITNQNVGGA 180
           AIERTRARMKENKGPGSDISPAPSDERVLEASIFLVTPKATIGKVPKILRGITNQNVGGA
Sbjct: 121 AIERTRARMKENKGPGSDISPAPSDERVLEASIFLVTPKATIGKVPKILRGITNQNVGGA 180

Query: 181 ETLTPQNKLLNSIDKVEKVVMEXXXXXXXXXXXXXXXREKRVRTLMSFR 230
           E LTPQNKLLNSIDKVEKVVMEXXXXXXXXXXXXXXXREKRVRTLMSFR
Sbjct: 181 EILTPQNKLLNSIDKVEKVVMEXXXXXXXXXXXXXXXREKRVRTLMSFR 229

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BLAST of Carg22466 vs. NCBI nr
Match: XP_004150162.1 (PREDICTED: protein POLYCHOME [Cucumis sativus])

HSP 1 Score: 292.4 bits (747), Expect = 1.4e-75
Identity = 168/249 (67.47%), Postives = 179/249 (71.89%), Query Frame = 0


Query: 1   MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLRTPISRATTTTTDQQRP------ 60
           MSE+RDRLERQVD+AEVFAR RSEGILDE+EM +NL+ TPI+RATTT T QQRP      
Sbjct: 1   MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRPTNPGPG 60

Query: 61  ---TNLRRSFGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTP 120
              TNLRR+FGSPISGGIGRNRFLYR+PVLSREN  AGSSRRSRSRGRNSVLPIWYPRTP
Sbjct: 61  GGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 120

Query: 121 LRDITAVVRAIERTRARMKENKGPGSDISPAPSDERVLEAS-----------IFLVTPKA 180
           LRDITAVVRAIERT                   DER LE S           I L+TPK 
Sbjct: 121 LRDITAVVRAIERTXXXXXXXXXXXXXXXXXXXDERALEYSVSVASDHQEPIISLLTPKP 180

Query: 181 TIGKVPKILRGITNQNVGGAETLTPQNKLLNSIDKVEKVVMEXXXXXXXXXXXXXXXREK 230
           T+GKVPKILRGI N+N  GAE LTPQ KLLNSIDKVEKVVME               REK
Sbjct: 181 TVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 240

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BLAST of Carg22466 vs. NCBI nr
Match: KGN53824.1 (hypothetical protein Csa_4G152290 [Cucumis sativus])

HSP 1 Score: 292.4 bits (747), Expect = 1.4e-75
Identity = 168/249 (67.47%), Postives = 179/249 (71.89%), Query Frame = 0


Query: 1   MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLRTPISRATTTTTDQQRP------ 60
           MSE+RDRLERQVD+AEVFAR RSEGILDE+EM +NL+ TPI+RATTT T QQRP      
Sbjct: 65  MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRPTNPGPG 124

Query: 61  ---TNLRRSFGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTP 120
              TNLRR+FGSPISGGIGRNRFLYR+PVLSREN  AGSSRRSRSRGRNSVLPIWYPRTP
Sbjct: 125 GGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 184

Query: 121 LRDITAVVRAIERTRARMKENKGPGSDISPAPSDERVLEAS-----------IFLVTPKA 180
           LRDITAVVRAIERT                   DER LE S           I L+TPK 
Sbjct: 185 LRDITAVVRAIERTXXXXXXXXXXXXXXXXXXXDERALEYSVSVASDHQEPIISLLTPKP 244

Query: 181 TIGKVPKILRGITNQNVGGAETLTPQNKLLNSIDKVEKVVMEXXXXXXXXXXXXXXXREK 230
           T+GKVPKILRGI N+N  GAE LTPQ KLLNSIDKVEKVVME               REK
Sbjct: 245 TVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 304

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BLAST of Carg22466 vs. TAIR10
Match: AT2G42260.1 (uv-b-insensitive 4)

HSP 1 Score: 165.6 bits (418), Expect = 3.5e-41
Identity = 119/262 (45.42%), Postives = 143/262 (54.58%), Query Frame = 0


Query: 1   MSESRDRLERQVDHAEVFARWRSEGI-LDEKEMSTNLLRTPISRATTTTTD--------- 60
           M E+RDR+ERQVD+   F   RS GI LDE     NL  +P+ R  +  T          
Sbjct: 1   MPEARDRIERQVDYPAAFLNRRSHGILLDEPATQHNLFGSPVQRVPSEATGGLGSIGQGS 60

Query: 61  -QQRPTNLRRSFGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPR 120
              R   +R +FG   +GG  R +  +RSP   REN   G +RR R+R  NSVLP WYPR
Sbjct: 61  MTGRGGLVRGNFGIRRTGGGRRGQIQFRSP-QGRENMSLGVTRRGRARASNSVLPSWYPR 120

Query: 121 TPLRDITAVVRAIERTRARMKENKGPGSDI-SPAPSDERVLEASI-----------FLVT 180
           TPLRDI+AVVRAIER RARM E  G G DI +P P    VL++ +            +VT
Sbjct: 121 TPLRDISAVVRAIERRRARMGE--GVGRDIETPTPQQLGVLDSLVPLSGAHLEHDYSMVT 180

Query: 181 PKATIG----------KVPKILRGITNQNVGGAETLTPQNKLLNSIDKVEKVVMEXXXXX 230
           P  +IG          KV +IL  IT +N G  + LTP+ KLLNSIDKVEKVVME     
Sbjct: 181 PGPSIGFKRPWPPSTAKVHQILLDITRENTGEEDALTPEKKLLNSIDKVEKVVMEEIQKM 240

[Close]

BLAST of Carg22466 vs. TAIR10
Match: AT3G57860.1 (UV-B-insensitive 4-like)

HSP 1 Score: 107.1 bits (266), Expect = 1.5e-23
Identity = 95/254 (37.40%), Postives = 123/254 (48.43%), Query Frame = 0


Query: 1   MSESRDRLERQVDHAEVFARWRSEGI-LDEKEMSTNLLRTPISRATTTTTDQQRPTNLRR 60
           M E+RDR ER VD++ +FA  R  GI LDE +   +L+ +P++    +            
Sbjct: 1   MPEARDRTERPVDYSTIFANRRRHGILLDEPDSRLSLIESPVNPDIGSIGGTGGLVRGNF 60

Query: 61  SFGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTPLRDITAVV 120
           +   P +G  G   F  R P   REN    ++RR R  G   +LP WYPRTPLRDIT +V
Sbjct: 61  TTWRPGNGRGGHTPF--RLP-QGRENMPIVTARRGRGGG---LLPSWYPRTPLRDITHIV 120

Query: 121 RAIERTRARMKENKGPGSDIS-----PAPSDERVLEASI--------FLVTPKATIG--- 180
           RAIER R       G G D       P      VLE+ +         +VTP  ++G   
Sbjct: 121 RAIERRR-----GAGTGGDDGRVIEIPTHRQVGVLESPVPLSGEHKCSMVTPGPSVGFKR 180

Query: 181 -------KVPKILRGITNQNV-GGAETLTPQNKLLNSIDKVEKVVMEXXXXXXXXXXXXX 230
                  KV K+L  IT +     A  +TP+ KLLNSIDKVEK+VM              
Sbjct: 181 SCPPSTAKVQKMLLDITKEIAEEEAGFITPEKKLLNSIDKVEKIVMAEIQKLKSTPQAKR 240

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BLAST of Carg22466 vs. Swiss-Prot
Match: sp|O48533|PYM_ARATH (Protein POLYCHOME OS=Arabidopsis thaliana OX=3702 GN=PYM PE=1 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 6.4e-40
Identity = 119/262 (45.42%), Postives = 143/262 (54.58%), Query Frame = 0


Query: 1   MSESRDRLERQVDHAEVFARWRSEGI-LDEKEMSTNLLRTPISRATTTTTD--------- 60
           M E+RDR+ERQVD+   F   RS GI LDE     NL  +P+ R  +  T          
Sbjct: 1   MPEARDRIERQVDYPAAFLNRRSHGILLDEPATQHNLFGSPVQRVPSEATGGLGSIGQGS 60

Query: 61  -QQRPTNLRRSFGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPR 120
              R   +R +FG   +GG  R +  +RSP   REN   G +RR R+R  NSVLP WYPR
Sbjct: 61  MTGRGGLVRGNFGIRRTGGGRRGQIQFRSP-QGRENMSLGVTRRGRARASNSVLPSWYPR 120

Query: 121 TPLRDITAVVRAIERTRARMKENKGPGSDI-SPAPSDERVLEASI-----------FLVT 180
           TPLRDI+AVVRAIER RARM E  G G DI +P P    VL++ +            +VT
Sbjct: 121 TPLRDISAVVRAIERRRARMGE--GVGRDIETPTPQQLGVLDSLVPLSGAHLEHDYSMVT 180

Query: 181 PKATIG----------KVPKILRGITNQNVGGAETLTPQNKLLNSIDKVEKVVMEXXXXX 230
           P  +IG          KV +IL  IT +N G  + LTP+ KLLNSIDKVEKVVME     
Sbjct: 181 PGPSIGFKRPWPPSTAKVHQILLDITRENTGEEDALTPEKKLLNSIDKVEKVVMEEIQKM 240

[Close]

BLAST of Carg22466 vs. Swiss-Prot
Match: sp|Q9M2R1|GIG1_ARATH (Protein GIGAS CELL1 OS=Arabidopsis thaliana OX=3702 GN=GIG1 PE=1 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.7e-22
Identity = 95/254 (37.40%), Postives = 123/254 (48.43%), Query Frame = 0


Query: 1   MSESRDRLERQVDHAEVFARWRSEGI-LDEKEMSTNLLRTPISRATTTTTDQQRPTNLRR 60
           M E+RDR ER VD++ +FA  R  GI LDE +   +L+ +P++    +            
Sbjct: 1   MPEARDRTERPVDYSTIFANRRRHGILLDEPDSRLSLIESPVNPDIGSIGGTGGLVRGNF 60

Query: 61  SFGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTPLRDITAVV 120
           +   P +G  G   F  R P   REN    ++RR R  G   +LP WYPRTPLRDIT +V
Sbjct: 61  TTWRPGNGRGGHTPF--RLP-QGRENMPIVTARRGRGGG---LLPSWYPRTPLRDITHIV 120

Query: 121 RAIERTRARMKENKGPGSDIS-----PAPSDERVLEASI--------FLVTPKATIG--- 180
           RAIER R       G G D       P      VLE+ +         +VTP  ++G   
Sbjct: 121 RAIERRR-----GAGTGGDDGRVIEIPTHRQVGVLESPVPLSGEHKCSMVTPGPSVGFKR 180

Query: 181 -------KVPKILRGITNQNV-GGAETLTPQNKLLNSIDKVEKVVMEXXXXXXXXXXXXX 230
                  KV K+L  IT +     A  +TP+ KLLNSIDKVEK+VM              
Sbjct: 181 SCPPSTAKVQKMLLDITKEIAEEEAGFITPEKKLLNSIDKVEKIVMAEIQKLKSTPQAKR 240

[Close]

BLAST of Carg22466 vs. TrEMBL
Match: tr|A0A0A0KY99|A0A0A0KY99_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G152290 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 9.1e-76
Identity = 168/249 (67.47%), Postives = 179/249 (71.89%), Query Frame = 0


Query: 1   MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLRTPISRATTTTTDQQRP------ 60
           MSE+RDRLERQVD+AEVFAR RSEGILDE+EM +NL+ TPI+RATTT T QQRP      
Sbjct: 65  MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRPTNPGPG 124

Query: 61  ---TNLRRSFGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTP 120
              TNLRR+FGSPISGGIGRNRFLYR+PVLSREN  AGSSRRSRSRGRNSVLPIWYPRTP
Sbjct: 125 GGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 184

Query: 121 LRDITAVVRAIERTRARMKENKGPGSDISPAPSDERVLEAS-----------IFLVTPKA 180
           LRDITAVVRAIERT                   DER LE S           I L+TPK 
Sbjct: 185 LRDITAVVRAIERTXXXXXXXXXXXXXXXXXXXDERALEYSVSVASDHQEPIISLLTPKP 244

Query: 181 TIGKVPKILRGITNQNVGGAETLTPQNKLLNSIDKVEKVVMEXXXXXXXXXXXXXXXREK 230
           T+GKVPKILRGI N+N  GAE LTPQ KLLNSIDKVEKVVME               REK
Sbjct: 245 TVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 304

[Close]

BLAST of Carg22466 vs. TrEMBL
Match: tr|A0A1S3CDA1|A0A1S3CDA1_CUCME (protein POLYCHOME OS=Cucumis melo OX=3656 GN=LOC103499559 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 8.8e-71
Identity = 161/249 (64.66%), Postives = 172/249 (69.08%), Query Frame = 0


Query: 1   MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLRTPISRAT---------TTTTDQ 60
           MSE+RDRLERQVD+AEVFAR RSEGILDE+EM +NL+ TPI+RAT               
Sbjct: 1   MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATXXXXXXXXXXXXXXX 60

Query: 61  QRPTNLRRSFGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTP 120
               NLRR+FGSPISGGIGRNRFLYR+PVLSREN  AGSSRRSRSRGRNSVLPIWYPRTP
Sbjct: 61  XXXANLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 120

Query: 121 LRDITAVVRAIERTRARMKENKGPGSDISPAPSDERVLEAS-----------IFLVTPKA 180
           LRDITAVVRAIERT                   DER LE S           I L+TPK 
Sbjct: 121 LRDITAVVRAIERTXXXXXXXXXXXXXXXXXXXDERALEYSVSVASDHQEPIISLLTPKP 180

Query: 181 TIGKVPKILRGITNQNVGGAETLTPQNKLLNSIDKVEKVVMEXXXXXXXXXXXXXXXREK 230
           T+GKVPKILRGI N+N  GAETLTPQ KLLNSIDKVEKVVME               REK
Sbjct: 181 TVGKVPKILRGIANENTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 240

[Close]

BLAST of Carg22466 vs. TrEMBL
Match: tr|A0A2P4HWJ9|A0A2P4HWJ9_QUESU (Protein polychome OS=Quercus suber OX=58331 GN=CFP56_75328 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.9e-41
Identity = 121/254 (47.64%), Postives = 148/254 (58.27%), Query Frame = 0


Query: 1   MSESRDRLERQVDHAEVFARWRSEG---ILDEKEMSTNLLRTPIS-RATTTTTDQQRPTN 60
           M ESRDRL R VDHA +FAR R+ G   ++D+ E+  NL  +P   R   T   +     
Sbjct: 1   MPESRDRLVRPVDHAAIFARRRTPGTGILIDDPEVGPNLFGSPAPVRQVATPATRGLFIR 60

Query: 61  LRRSFGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRS-RSRGRNSVLPIWYPRTPLRDI 120
            R  FG+P      R R LYR+P   +EN    + R S R R R+SVLP WYPRTPLRDI
Sbjct: 61  GRGGFGTPRH---VRGRNLYRTPASGQENNPRTAQRSSGRGRPRSSVLPSWYPRTPLRDI 120

Query: 121 TAVVRAIERTRARMKENKGPGSDISPAPSDERVLEAS-----------IFLVTPK----- 180
           TAVVRAIERTRAR+++ +G   + +P P  +RVL+ S           I +V+P      
Sbjct: 121 TAVVRAIERTRARLRDVEGQQIE-TPVPEGQRVLDPSVTQSSAQLKHNISMVSPSLAVGV 180

Query: 181 ----ATIGKVPKILRGITNQNVGGAETLTPQNKLLNSIDKVEKVVMEXXXXXXXXXXXXX 230
                 +GKVPKIL GITNQN G +E+LTPQ KLLNSID VEKVVME             
Sbjct: 181 KPRTPAVGKVPKILLGITNQNAGESESLTPQKKLLNSIDTVEKVVMEELQKLKRSPSAKK 240

[Close]

BLAST of Carg22466 vs. TrEMBL
Match: tr|F6HL68|F6HL68_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_08s0007g07790 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.5e-41
Identity = 129/267 (48.31%), Postives = 148/267 (55.43%), Query Frame = 0


Query: 1   MSESRDRLERQVDHAEVFARWRSE--GIL-DEKEMSTNLLRTPISRAT---TTTTDQQRP 60
           M ESRDRL R  D AE+F R RS   GIL D  E S+NL  +P  R T   TTT   +  
Sbjct: 1   MPESRDRLSRPEDIAELFLRRRSGILGILADGSERSSNLFASPSRRETTTRTTTLGARGA 60

Query: 61  TNL---------RRSFGSP-ISGGIGRNRFLYRSPVLSRENAVA-GSSRRSRSRGRNSVL 120
           T +         R  FG+P I  G GR R +YRSP+  REN  A GS RR R R  NSVL
Sbjct: 61  TGILASRGGGVGRGGFGTPRIGTGRGRGRAVYRSPLFGRENTPATGSGRRGRGRSGNSVL 120

Query: 121 PIWYPRTPLRDITAVVRAIERTRARMKENKGPGSDISPAPSD------------ERVLEA 180
           P WYPRTPLRDIT VVRAIER RAR++E  G   DI P P D               LE 
Sbjct: 121 PSWYPRTPLRDITHVVRAIERRRARLREIDGQQIDI-PIPQDISDVHDPILPPSSAQLEQ 180

Query: 181 SIFLVTPKAT---------IGKVPKILRGITNQNVGGAETLTPQNKLLNSIDKVEKVVME 230
            I +++P  T         +GKVPKIL  IT+Q  GG++ LTPQ KLLNSID VEK VM+
Sbjct: 181 DISMISPSPTSGMKLVPKAVGKVPKILLDITDQTGGGSDFLTPQKKLLNSIDTVEKAVMD 240

[Close]

BLAST of Carg22466 vs. TrEMBL
Match: tr|A0A2N9HHY2|A0A2N9HHY2_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39407 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.6e-40
Identity = 127/260 (48.85%), Postives = 152/260 (58.46%), Query Frame = 0


Query: 1   MSESRDRLERQVDHAEVFARWRSEGI---LDEKEMSTNLLRTPISR---ATTTTTDQQRP 60
           M ESRDRL R +D+A VF+  RS GI   LD+ EM +NL  +P+     AT TT   +  
Sbjct: 1   MPESRDRLSRPLDYAAVFSHRRSAGIGVLLDDPEMGSNLFGSPLPARRVATVTTPATRGR 60

Query: 61  TNLR--RSFGSPISGGIGRNRFLYRSPVLSRENAVAGSS-RRSRSRGR--NSVLPIWYPR 120
           T LR  R  G+P S    R R LY SP   REN  + S+ RR+  RGR  +SVLP WYPR
Sbjct: 61  TGLRLTRGRGTPRS---MRGRNLYGSPDFGRENTPSTSTGRRNSVRGRPGSSVLPSWYPR 120

Query: 121 TPLRDITAVVRAIERTRARMKENKGPGSDISPAPSDERVLEAS-----------IFLVTP 180
            PLRDITAVVRAIER RAR+ + +G   + SP P  +RVL+ S           I +++P
Sbjct: 121 APLRDITAVVRAIERRRARLGDVEGQPIE-SPIPEGQRVLDPSVTPSGAQLKHNISMISP 180

Query: 181 KA---------TIGKVPKILRGITNQNVGGAETLTPQNKLLNSIDKVEKVVMEXXXXXXX 230
                       +GKVPKIL GIT+QN G +E LTPQ KLLNSID VEKVVME       
Sbjct: 181 NTAVGVKPCTPAVGKVPKILLGITDQNAGESEFLTPQKKLLNSIDTVEKVVMEELQKLKR 240

The following BLAST results are available for this feature:

BLAST of Carg22466 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022928675.1	5.0e-110	100.00	protein POLYCHOME-like [Cucurbita moschata]	[more]
XP_023543597.1	1.0e-107	98.69	protein POLYCHOME-like [Cucurbita pepo subsp. pepo]	[more]
XP_022967896.1	2.0e-106	97.82	protein POLYCHOME-like [Cucurbita maxima]	[more]
XP_004150162.1	1.4e-75	67.47	PREDICTED: protein POLYCHOME [Cucumis sativus]	[more]
KGN53824.1	1.4e-75	67.47	hypothetical protein Csa_4G152290 [Cucumis sativus]	[more]

BLAST of Carg22466 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G42260.1	3.5e-41	45.42	uv-b-insensitive 4	[more]
AT3G57860.1	1.5e-23	37.40	UV-B-insensitive 4-like	[more]

BLAST of Carg22466 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O48533\|PYM_ARATH	6.4e-40	45.42	Protein POLYCHOME OS=Arabidopsis thaliana OX=3702 GN=PYM PE=1 SV=1	[more]
sp\|Q9M2R1\|GIG1_ARATH	2.7e-22	37.40	Protein GIGAS CELL1 OS=Arabidopsis thaliana OX=3702 GN=GIG1 PE=1 SV=1	[more]

BLAST of Carg22466 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KY99\|A0A0A0KY99_CUCSA	9.1e-76	67.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G152290 PE=4 SV=1	[more]
tr\|A0A1S3CDA1\|A0A1S3CDA1_CUCME	8.8e-71	64.66	protein POLYCHOME OS=Cucumis melo OX=3656 GN=LOC103499559 PE=4 SV=1	[more]
tr\|A0A2P4HWJ9\|A0A2P4HWJ9_QUESU	1.9e-41	47.64	Protein polychome OS=Quercus suber OX=58331 GN=CFP56_75328 PE=4 SV=1	[more]
tr\|F6HL68\|F6HL68_VITVI	2.5e-41	48.31	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_08s0007g07790 PE=4 SV=...	[more]
tr\|A0A2N9HHY2\|A0A2N9HHY2_FAGSY	1.6e-40	48.85	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39407 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0051783	regulation of nuclear division
GO:1904667	negative regulation of ubiquitin protein ligase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR034590	POLYCHOME/GIG1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1904667	negative regulation of ubiquitin protein ligase activity
biological_process	GO:0051783	regulation of nuclear division
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22466-RA	Carg22466-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR034590	POLYCHOME/GIGAS CELL1	PANTHER	PTHR35119	FAMILY NOT NAMED	coord: 1..229
None	No IPR available	PANTHER	PTHR35119:SF1	PROTEIN GIGAS CELL1-RELATED	coord: 1..229

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22466	Cla000743	Watermelon (97103) v1	carwmB0185
Carg22466	Csa4G152290	Cucumber (Chinese Long) v2	carcuB0214
Carg22466	MELO3C023180	Melon (DHL92) v3.5.1	carmeB0195
Carg22466	ClCG04G000340	Watermelon (Charleston Gray)	carwcgB0184
Carg22466	CSPI04G10380	Wild cucumber (PI 183967)	carcpiB0222
Carg22466	CmaCh03G000790	Cucurbita maxima (Rimu)	carcmaB0266
Carg22466	CmaCh07G013150	Cucurbita maxima (Rimu)	carcmaB0268
Carg22466	CmoCh03G000800	Cucurbita moschata (Rifu)	carcmoB0273
Carg22466	CmoCh07G013590	Cucurbita moschata (Rifu)	carcmoB0275
Carg22466	Lsi01G018920	Bottle gourd (USVL1VR-Ls)	carlsiB170
Carg22466	Cp4.1LG19g00650	Cucurbita pepo (Zucchini)	carcpeB0277
Carg22466	Cp4.1LG10g11700	Cucurbita pepo (Zucchini)	carcpeB0276
Carg22466	CsGy4G010070	Cucumber (Gy14) v2	carcgybB0207
Carg22466	MELO3C023180.2	Melon (DHL92) v3.6.1	carmedB0200
Carg22466	CsaV3_4G010540	Cucumber (Chinese Long) v3	carcucB0220
Carg22466	Cla97C04G068720	Watermelon (97103) v2	carwmbB0196
Carg22466	Bhi03G002127	Wax gourd	carwgoB0243

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg22466	Carg12737	Silver-seed gourd	carcarB230

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22466	Wax gourd	carwgoB0241
Carg22466	Cucumber (Gy14) v2	carcgybB0205
Carg22466	Cucumber (Gy14) v1	carcgyB0233
Carg22466	Wild cucumber (PI 183967)	carcpiB0221
Carg22466	Cucumber (Chinese Long) v2	carcuB0213
Carg22466	Cucumber (Chinese Long) v3	carcucB0219
Carg22466	Melon (DHL92) v3.6.1	carmedB0199