Lsi01G018920 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi01G018920
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Uv-b-insensitive 4, putative
Location	chr01 : 21862943 .. 21866244 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAATTGAAAATGAGTTTAAGTAGCGCCCAAATTTTCGCATTTGAAATTTGCCCAAAATTTCGCCTTCTCTCCAAGCAGCTCCATCTTCTTCCCTCTCATTTTTCAACTGCGCGTCTCACAGAAGAGAGCGCCTCCCACCAATCCACCGCCATTTCGTTTGGTCAAAGGTTAAACAAATACTCCATTGAAGCTCACTGGAATCTCACAGTATGAATGAATTTCCATCTTCCTTTTCTCCATTTCTTTTTTACTTTTTGAAGAATGTAGAAATTAAATGTAGGTTTTCTTGTAAGTTTTTGTTTTAACTCAAAGATTCTGAGTTCTTGTTACTGTAGACTTAGATTAGGGTTTCTCGCTTTCTTCTTCTTCGAAATGATTGTTTTCTTGCTTCTTCCTTTTGAAGTTCCATAATGTCGGAAGCAAGAGATAGATTGGAGAGGCAAGTGGATCATGCTGAGGTATTTGCTCGTCGGAGATCGGAAGGTATATTGGACGAGCAAGAAATGAATTCTCATTTGATAGGTACTCAGATTGCACGCACTACAACGACTACTGCTCAACAAAGACCTACGAATCCCAGCCCTGGTGGAGGTGGTCCGAATCTGAGACGCACTTTTGGTTCTCCCATTTCTGGTGGAATTGGGCGTAATAGACATCTTTACAGATCTCCAGTTTTGAACCGCGAGAATACGGCGGCTGGGAGTTCCCGGCGGAATAGATCTCGGGGTAGAAACAGTGTATTACCGATTTGGTACCCAAGAACCCCTCTCCGCGACATAACCGCAGTTGTGAGGGTAAATGGCTAATTCCCCTGTTACTTTGATGTTGTTCTGCTAAATCTTTCCAAATCTTTCAATTTTGTGGTTTATTGTGCATTTGATTCATATTGTTTATAGCAAACCTATTCACATTGTTATCACATATGGTCTCTGGTATGCATATACGTACTCTAATAGCTGTAAGATTTGTTCTCTGATACAGTATATTTGTTTGGATTTGTTCTAATTTTAATTTGCTTGATCTTTGGAAAACCTCCTTTTGATTTTTCTGGTGTAGTTGTTGTGATTCTTGTTTCTGTTTTTCAGTTGGTAAGCATTTGTTTTGATTTGATTTTAGTTGAATTGATTTTTAACCGAAAATGTTATTGCATATGTTTAATCCTTTTTTGTGAATCCTTAGATTGGATCACTTTCCTTTCTCTTTAAGTTAATTAATCAATAAATTTTCAGCGTTTTTAAGCTATGTACTACCTACCTGTTTGTCTAAAAAGTAGATTCTTTTGGTTTGTAACATCCATGTCCAATGATTTCATATGAAACATCAACAGTCTGGATAATGAGATCCTGTCCACCATTAATTAAAGTTAACATAATTCGTCTCCTTTTTAGTTTTTATATTCATTGTTTTCTTGGATTCCAATCGGTTTTTAGGCTTCATTTTTACCCGTTATTAGAACTACTTTTTGGTGGGCTCAATATGCTTCGGCTGGTTACTAGGATGTGCTGACTAGGTAGTCCAATCAACATTTTGGGCCTATGTTAAAGCTGTGATTTGGATGTCAAATTGCTGATTTATTAGCCAATAAGTTTTTAAAAAACTATGTTTGAAAAGCATATTAACACTCATATTATCGTTACTTGTGGGACATGTGTAGAATTCTCATTAAGCATGCGTTGACACTTGTACATTATTTGACCTGACGTTTCAATGTATTAGTATTAATTAATTTATTTTGTTTGAAAAGTTTAATGGACGAGAAAATATATAATTTGAGTGAAAAGTATCATATTTAATTTTTCAAGCATCTAGGTGCATATATATTATTGACCTTAAATTTGTTAAGATTATAGAATCCTTTTTTAAATAACGACTCTTTCTCAGATATTCTCATACACTAAAGCAAACTATTATGAGGAAAAATCTTTGTAATGAAATAAAATAGTTACATGATTTTTCAAAATTGTAGAAAGTAAATGTGCCATTGCTTTTTCTGTCCTCATTTTTCAGAAAATATCATATCACGTTATAATTCATCATGTCTTCTCTATGTCACGTGTTTGTGTCTATGGACCATTCATCTAAAATCTTTGTTACTTTTTAAGTTGATTCACTGATAATTTTGCTGTCAATGGGGAAACATTCCCACTATCTTATCACTTCTCTGCCGATTTCATTTGAGAGCTGTCTTTTACAAGTCTTCTTTGAGCTATGTTCTTTCACTAATCAAAGCGAATTCTCTTTAAAACATTGCATCTGGGCTCAGGTTTTTGTCTTTCCAAGAGTTCCAACTTATTTAGCTTTATCCTGCATGTGGGCATTTGGATATTTAGCTACTGCTCCATGTCATTCAATATCACCTGTGTTTTTCCTAGTTTTTCATTTGAGGCAATTGAAAGGTCATTTAGTTAATATGGAGAGAATGTTATTGTTTTAATCAGGCAATTGAAAGGACAAGAGCTCGCTTGAGAGAAAACGAAGGCCAAGGAAGTGACAATAGTCCTGCTCCCTCGGACGAAAGAGCTTTAGAGTACAGCGTATCTGTGGCAGGTGATCATCAAGAGCCAAGCATTTCTCTGGTCACCCCAAAACCAACCGTAGGCAAAGTTCCAAAGATTCTTCTTGGAATCGCAAATCAGAACACGGTAGGGGCCGAGACTCTCACTCCCCAGAAGAAGCTCTTGAACTCCATAGACAAAGTGGAGAAAGTAGTAATGGAGGAGTTGCAGAAATTGAAAAGAACTCCCAGTGCTAAGAAAGCAGAGAGGGAGAAAAGGGTTCGAACTTTAATGTCGTTTCGTTGATTCATTTCAACACAAACACATTCCCTGAAATGTTTTGGCAATCATCTGACTTAAACTCAGGAACTTCAGAGGATCAATCATCTGCTGATGATTACTTTGGTCAAGAGCGCCCATTGATCAGAGGGAGGGAGAAAGAGATCCTCATCTTCTGATGAGATCTCATCTCTGGTGGAGGATTATGTGTTAGTTTCCTTTAAAAAATGAATCCTTTTCATTTACAAAAACCATCTTTGGATTTAGATGTTTAGTAAGCATTCTACAATATATAGGGCTTATTTTGTTGTTGTAGGGTCTGCCTTTGTTTGTTTACTACAGATTATAGATATAGCTAAAGCAGGCCTTTTCTGGGCGGTGGAAATGATGTAAATAGAAATTTTATTCACTCTACAACTTGAAATTTTTGCCTTTCGAAATCTTATTAGATGCACATTTTTGATTGGCTGCCATTATCATCAGGTTTGAAGTGATCTCTACAATCAGGTGAGAATGAAATCCCTT

mRNA sequence

AAAAAATTGAAAATGAGTTTAAGTAGCGCCCAAATTTTCGCATTTGAAATTTGCCCAAAATTTCGCCTTCTCTCCAAGCAGCTCCATCTTCTTCCCTCTCATTTTTCAACTGCGCGTCTCACAGAAGAGAGCGCCTCCCACCAATCCACCGCCATTTCGTTTGGTCAAAGGTTAAACAAATACTCCATTGAAGCTCACTGGAATCTCACAGTTTTCTTTTCCATAATGTCGGAAGCAAGAGATAGATTGGAGAGGCAAGTGGATCATGCTGAGGTATTTGCTCGTCGGAGATCGGAAGGTATATTGGACGAGCAAGAAATGAATTCTCATTTGATAGGTACTCAGATTGCACGCACTACAACGACTACTGCTCAACAAAGACCTACGAATCCCAGCCCTGGTGGAGGTGGTCCGAATCTGAGACGCACTTTTGGTTCTCCCATTTCTGGTGGAATTGGGCGTAATAGACATCTTTACAGATCTCCAGTTTTGAACCGCGAGAATACGGCGGCTGGGAGTTCCCGGCGGAATAGATCTCGGGGTAGAAACAGTGTATTACCGATTTGGTACCCAAGAACCCCTCTCCGCGACATAACCGCAGTTGTGAGGGCAATTGAAAGGACAAGAGCTCGCTTGAGAGAAAACGAAGGCCAAGGAAGTGACAATAGTCCTGCTCCCTCGGACGAAAGAGCTTTAGAGTACAGCGTATCTGTGGCAGGTGATCATCAAGAGCCAAGCATTTCTCTGGTCACCCCAAAACCAACCGTAGGCAAAGTTCCAAAGATTCTTCTTGGAATCGCAAATCAGAACACGGTAGGGGCCGAGACTCTCACTCCCCAGAAGAAGCTCTTGAACTCCATAGACAAAGTGGAGAAAGTAGTAATGGAGGAGTTGCAGAAATTGAAAAGAACTCCCAGTGCTAAGAAAGCAGAGAGGGAGAAAAGGGTTCGAACTTTAATGTCGTTTCGTTGATTCATTTCAACACAAACACATTCCCTGAAATGTTTTGGCAATCATCTGACTTAAACTCAGGAACTTCAGAGGATCAATCATCTGCTGATGATTACTTTGGTCAAGAGCGCCCATTGATCAGAGGGAGGGAGAAAGAGATCCTCATCTTCTGATGAGATCTCATCTCTGGTGGAGGATTATGTGTTAGTTTCCTTTAAAAAATGAATCCTTTTCATTTACAAAAACCATCTTTGGATTTAGATGTTTAGTAAGCATTCTACAATATATAGGGCTTATTTTGTTGTTGTAGGGTCTGCCTTTGTTTGTTTACTACAGATTATAGATATAGCTAAAGCAGGCCTTTTCTGGGCGGTGGAAATGATGTAAATAGAAATTTTATTCACTCTACAACTTGAAATTTTTGCCTTTCGAAATCTTATTAGATGCACATTTTTGATTGGCTGCCATTATCATCAGGTTTGAAGTGATCTCTACAATCAGGTGAGAATGAAATCCCTT

Coding sequence (CDS)

ATGAGTTTAAGTAGCGCCCAAATTTTCGCATTTGAAATTTGCCCAAAATTTCGCCTTCTCTCCAAGCAGCTCCATCTTCTTCCCTCTCATTTTTCAACTGCGCGTCTCACAGAAGAGAGCGCCTCCCACCAATCCACCGCCATTTCGTTTGGTCAAAGGTTAAACAAATACTCCATTGAAGCTCACTGGAATCTCACAGTTTTCTTTTCCATAATGTCGGAAGCAAGAGATAGATTGGAGAGGCAAGTGGATCATGCTGAGGTATTTGCTCGTCGGAGATCGGAAGGTATATTGGACGAGCAAGAAATGAATTCTCATTTGATAGGTACTCAGATTGCACGCACTACAACGACTACTGCTCAACAAAGACCTACGAATCCCAGCCCTGGTGGAGGTGGTCCGAATCTGAGACGCACTTTTGGTTCTCCCATTTCTGGTGGAATTGGGCGTAATAGACATCTTTACAGATCTCCAGTTTTGAACCGCGAGAATACGGCGGCTGGGAGTTCCCGGCGGAATAGATCTCGGGGTAGAAACAGTGTATTACCGATTTGGTACCCAAGAACCCCTCTCCGCGACATAACCGCAGTTGTGAGGGCAATTGAAAGGACAAGAGCTCGCTTGAGAGAAAACGAAGGCCAAGGAAGTGACAATAGTCCTGCTCCCTCGGACGAAAGAGCTTTAGAGTACAGCGTATCTGTGGCAGGTGATCATCAAGAGCCAAGCATTTCTCTGGTCACCCCAAAACCAACCGTAGGCAAAGTTCCAAAGATTCTTCTTGGAATCGCAAATCAGAACACGGTAGGGGCCGAGACTCTCACTCCCCAGAAGAAGCTCTTGAACTCCATAGACAAAGTGGAGAAAGTAGTAATGGAGGAGTTGCAGAAATTGAAAAGAACTCCCAGTGCTAAGAAAGCAGAGAGGGAGAAAAGGGTTCGAACTTTAATGTCGTTTCGTTGA

Protein sequence

MSLSSAQIFAFEICPKFRLLSKQLHLLPSHFSTARLTEESASHQSTAISFGQRLNKYSIEAHWNLTVFFSIMSEARDRLERQVDHAEVFARRRSEGILDEQEMNSHLIGTQIARTTTTTAQQRPTNPSPGGGGPNLRRTFGSPISGGIGRNRHLYRSPVLNRENTAAGSSRRNRSRGRNSVLPIWYPRTPLRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEYSVSVAGDHQEPSISLVTPKPTVGKVPKILLGIANQNTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREKRVRTLMSFR

Homology

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BLAST of Lsi01G018920 vs. Swiss-Prot
Match: PYM_ARATH (Protein POLYCHOME OS=Arabidopsis thaliana GN=PYM PE=1 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 8.4e-51
Identity = 134/261 (51.34%), Postives = 165/261 (63.22%), Query Frame = 1


Query: 72  MSEARDRLERQVDHAEVFARRRSEGIL-DEQEMNSHLIGTQIARTTT--TTAQQRPTNPS 131
           M EARDR+ERQVD+   F  RRS GIL DE     +L G+ + R  +  T         S
Sbjct: 1   MPEARDRIERQVDYPAAFLNRRSHGILLDEPATQHNLFGSPVQRVPSEATGGLGSIGQGS 60

Query: 132 PGGGGPNLRRTFGSPISGGIGRNRHLYRSPVLNRENTAAGSSRRNRSRGRNSVLPIWYPR 191
             G G  +R  FG   +GG  R +  +RSP   REN + G +RR R+R  NSVLP WYPR
Sbjct: 61  MTGRGGLVRGNFGIRRTGGGRRGQIQFRSPQ-GRENMSLGVTRRGRARASNSVLPSWYPR 120

Query: 192 TPLRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEYSVSVAGDHQEPSISLVTP 251
           TPLRDI+AVVRAIER RAR+ E  G+  + +P P     L+  V ++G H E   S+VTP
Sbjct: 121 TPLRDISAVVRAIERRRARMGEGVGRDIE-TPTPQQLGVLDSLVPLSGAHLEHDYSMVTP 180

Query: 252 KPTVG----------KVPKILLGIANQNTVGAETLTPQKKLLNSIDKVEKVVMEELQKLK 311
            P++G          KV +ILL I  +NT   + LTP+KKLLNSIDKVEKVVMEE+QK+K
Sbjct: 181 GPSIGFKRPWPPSTAKVHQILLDITRENTGEEDALTPEKKLLNSIDKVEKVVMEEIQKMK 240

Query: 312 RTPSAKKAEREKRVRTLMSFR 320
            TPSAK+AEREKRVRTLMS R
Sbjct: 241 STPSAKRAEREKRVRTLMSMR 259

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BLAST of Lsi01G018920 vs. Swiss-Prot
Match: GIG1_ARATH (Protein GIGAS CELL1 OS=Arabidopsis thaliana GN=GIG1 PE=1 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 8.5e-35
Identity = 121/268 (45.15%), Postives = 147/268 (54.85%), Query Frame = 1


Query: 72  MSEARDRLERQVDHAEVFARRRSEGIL-DEQEMNSHLIGTQIARTTTTTAQQRPTNPSPG 131
           M EARDR ER VD++ +FA RR  GIL DE +    LI             + P NP  G
Sbjct: 1   MPEARDRTERPVDYSTIFANRRRHGILLDEPDSRLSLI-------------ESPVNPDIG 60

Query: 132 --GGGPNLRRTFGSPISGGIGRNRHL-YRSPVLNRENTAAGSSRRNRSRGRNSVLPIWYP 191
             GG   L R   +    G GR  H  +R P   REN    ++RR R  G   +LP WYP
Sbjct: 61  SIGGTGGLVRGNFTTWRPGNGRGGHTPFRLPQ-GRENMPIVTARRGRGGG---LLPSWYP 120

Query: 192 RTPLRDITAVVRAIERTRARLRENEGQGSDNS-----PAPSDERALEYSVSVAGDHQEPS 251
           RTPLRDIT +VRAIER     R   G G D+      P       LE  V ++G+H+   
Sbjct: 121 RTPLRDITHIVRAIER-----RRGAGTGGDDGRVIEIPTHRQVGVLESPVPLSGEHK--- 180

Query: 252 ISLVTPKPTVG----------KVPKILLGIANQNTVG-AETLTPQKKLLNSIDKVEKVVM 311
            S+VTP P+VG          KV K+LL I  +     A  +TP+KKLLNSIDKVEK+VM
Sbjct: 181 CSMVTPGPSVGFKRSCPPSTAKVQKMLLDITKEIAEEEAGFITPEKKLLNSIDKVEKIVM 240

Query: 312 EELQKLKRTPSAKKAEREKRVRTLMSFR 320
            E+QKLK TP AK+ EREKRVRTLM+ R
Sbjct: 241 AEIQKLKSTPQAKREEREKRVRTLMTMR 243

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BLAST of Lsi01G018920 vs. TrEMBL
Match: A0A0A0KY99_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G152290 PE=4 SV=1)

HSP 1 Score: 473.0 bits (1216), Expect = 2.8e-130
Identity = 264/325 (81.23%), Postives = 277/325 (85.23%), Query Frame = 1


Query: 1   MSLSSAQIFAFEICPKFRLLSKQLHLLPSHFSTARLTEESASHQSTAISFGQRLNKYSIE 60
           MSLSSAQIF F+ICPKFRLLS QLHLLPSHFS+  LT+           F          
Sbjct: 1   MSLSSAQIFPFQICPKFRLLSNQLHLLPSHFSSPLLTDRRLPPIHRHFFF---------- 60

Query: 61  AHWNLT-----VFFSIMSEARDRLERQVDHAEVFARRRSEGILDEQEMNSHLIGTQIART 120
             WN       +  SIMSEARDRLERQVD+AEVFARRRSEGILDEQEM S+LIGT IAR 
Sbjct: 61  --WNTPFKPTGISRSIMSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARA 120

Query: 121 TTT-TAQQRPTNPSPGGGGPNLRRTFGSPISGGIGRNRHLYRSPVLNRENTAAGSSRRNR 180
           TTT TAQQRPTNP PGGGG NLRRTFGSPISGGIGRNR LYR+PVL+REN +AGSSRR+R
Sbjct: 121 TTTNTAQQRPTNPGPGGGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSR 180

Query: 181 SRGRNSVLPIWYPRTPLRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEYSVSV 240
           SRGRNSVLPIWYPRTPLRDITAVVRAIERTRARLRENEGQGSD+SPAPSDERALEYSVSV
Sbjct: 181 SRGRNSVLPIWYPRTPLRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSV 240

Query: 241 AGDHQEPSISLVTPKPTVGKVPKILLGIANQNTVGAETLTPQKKLLNSIDKVEKVVMEEL 300
           A DHQEP ISL+TPKPTVGKVPKIL GIAN+NTVGAE LTPQKKLLNSIDKVEKVVMEEL
Sbjct: 241 ASDHQEPIISLLTPKPTVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEEL 300

Query: 301 QKLKRTPSAKKAEREKRVRTLMSFR 320
           QKLKRTPSAKKAEREKRVRTLMSFR
Sbjct: 301 QKLKRTPSAKKAEREKRVRTLMSFR 313

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BLAST of Lsi01G018920 vs. TrEMBL
Match: F6HL68_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g07790 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 3.8e-50
Identity = 147/268 (54.85%), Postives = 168/268 (62.69%), Query Frame = 1


Query: 72  MSEARDRLERQVDHAEVFARRRSE--GIL-DEQEMNSHLIGTQIARTTTTTAQQRPTNPS 131
           M E+RDRL R  D AE+F RRRS   GIL D  E +S+L  +   R TTT         +
Sbjct: 1   MPESRDRLSRPEDIAELFLRRRSGILGILADGSERSSNLFASPSRRETTTRTTTLGARGA 60

Query: 132 PG-----GGGPNLRRTFGSP-ISGGIGRNRHLYRSPVLNRENT-AAGSSRRNRSRGRNSV 191
            G     GGG   R  FG+P I  G GR R +YRSP+  RENT A GS RR R R  NSV
Sbjct: 61  TGILASRGGGVG-RGGFGTPRIGTGRGRGRAVYRSPLFGRENTPATGSGRRGRGRSGNSV 120

Query: 192 LPIWYPRTPLRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEYSVSVAGDHQ-E 251
           LP WYPRTPLRDIT VVRAIER RARLRE +GQ  D  P P D   +   +      Q E
Sbjct: 121 LPSWYPRTPLRDITHVVRAIERRRARLREIDGQQID-IPIPQDISDVHDPILPPSSAQLE 180

Query: 252 PSISLVTPKP---------TVGKVPKILLGIANQNTVGAETLTPQKKLLNSIDKVEKVVM 311
             IS+++P P          VGKVPKILL I +Q   G++ LTPQKKLLNSID VEK VM
Sbjct: 181 QDISMISPSPTSGMKLVPKAVGKVPKILLDITDQTGGGSDFLTPQKKLLNSIDTVEKAVM 240

Query: 312 EELQKLKRTPSAKKAEREKRVRTLMSFR 320
           +EL KLKRTPSAK+AE+EKRVRTLMS R
Sbjct: 241 DELGKLKRTPSAKRAEQEKRVRTLMSMR 266

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BLAST of Lsi01G018920 vs. TrEMBL
Match: V4LQQ2_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10017150mg PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 9.4e-49
Identity = 133/259 (51.35%), Postives = 164/259 (63.32%), Query Frame = 1


Query: 72  MSEARDRLERQVDHAEVFARRRSEGILDEQEMNSH-LIGTQIARTTTTTAQQRPTNPSPG 131
           M EARDR+ER VD+   F  RRS GIL +  +  H L G+ + R         P+ P  G
Sbjct: 1   MPEARDRIERPVDYPAAFLSRRSNGILHDDPVTQHSLFGSPVQRV--------PSEPVIG 60

Query: 132 GGGPNLRRTFGSPISGGIGRNRHLYRSPVLNRENTAAGSSRRNRSRGRNSVLPIWYPRTP 191
            GG  +R  FG   +GG  R +  +RSP   REN + G +RR R+R   SVLP WYPRTP
Sbjct: 61  RGGL-VRGNFGIRRTGGGRRGQTQFRSPQ-GRENMSLGVARRGRARASTSVLPSWYPRTP 120

Query: 192 LRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEYSVSVAGDHQEPSISLVTPKP 251
           LRD++ VVRAIER RAR+ E  G+  + +P P     L+  V ++G   E + S+VTP P
Sbjct: 121 LRDVSGVVRAIERRRARMGEGVGRDIE-TPTPQQLGVLDSLVPLSGAQLEHNYSMVTPGP 180

Query: 252 TVG----------KVPKILLGIANQNTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKRT 311
           +VG          KV KILL I  +NT   E+LTPQKKLLNSIDKVEKVVMEE+QK+K T
Sbjct: 181 SVGFKRPWPPSAAKVHKILLDITRENTGEEESLTPQKKLLNSIDKVEKVVMEEIQKMKST 240

Query: 312 PSAKKAEREKRVRTLMSFR 320
           PSAK+AEREKRVRTLMS R
Sbjct: 241 PSAKRAEREKRVRTLMSMR 248

[Close]

BLAST of Lsi01G018920 vs. TrEMBL
Match: V4RKR5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005700mg PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 6.1e-48
Identity = 141/266 (53.01%), Postives = 168/266 (63.16%), Query Frame = 1


Query: 72  MSEARDRLERQVDHAEVFARRRSEGIL----DEQEMNSHLIGTQIARTTTTTAQQRPTNP 131
           M EARDRL R VD A VFA+RR +G+L    DE E  S+ +G+ + R    T + +    
Sbjct: 1   MPEARDRLVRPVDVAVVFAQRR-QGVLGILQDEPESASNPLGSPLGRAAAATPRVQTRVA 60

Query: 132 SPGGGGPNLRRTFGSPISGGIGRNRHLYRSPV-----LNRENTAAGSSRRNRSRGRNSVL 191
             GGG        G+P SG +   R+ + S       + RENT AGS+ R   RGR +VL
Sbjct: 61  GRGGG-------LGTPRSGVVRGRRNAFGSATVTRGPIGRENTPAGSAAR---RGR-TVL 120

Query: 192 PIWYPRTPLRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEYSVSVAGDHQEPS 251
           P WYPRTPLRDITAVVRAIER RA L E EG   + SP    +R  +  V ++G   E +
Sbjct: 121 PSWYPRTPLRDITAVVRAIERRRAHLGEVEGLQME-SPMSHSQRGNDSFVPLSGAPPEHN 180

Query: 252 ISLVTPKPT---------VGKVPKILLGIANQNTVGAETLTPQKKLLNSIDKVEKVVMEE 311
           IS++TP PT         +GKVPKILL I NQ     E+LTPQKKLLNSIDKVEKVVMEE
Sbjct: 181 ISMMTPTPTLSVKACPPSIGKVPKILLDITNQAGAELESLTPQKKLLNSIDKVEKVVMEE 240

Query: 312 LQKLKRTPSAKKAEREKRVRTLMSFR 320
           L KLKRTP+AKKAEREKRVRTLMS R
Sbjct: 241 LNKLKRTPTAKKAEREKRVRTLMSMR 253

[Close]

BLAST of Lsi01G018920 vs. TrEMBL
Match: D7LI35_ARALL (Polychome, UV-B-insensitive 4 OS=Arabidopsis lyrata subsp. lyrata GN=UVI4 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 7.9e-48
Identity = 132/260 (50.77%), Postives = 164/260 (63.08%), Query Frame = 1


Query: 72  MSEARDRLERQVDHAEVFARRRSEGIL-DEQEMNSHLIGTQIARTTT-TTAQQRPTNPSP 131
           M EARDR+ER VD+   F  RRS GIL DE   + +L G+ + R  +  T        S 
Sbjct: 1   MPEARDRIERPVDYPAAFLNRRSHGILLDEPATHHNLFGSPVQRVPSEATGLGSVGQGSM 60

Query: 132 GGGGPNLRRTFGSPISGGIGRNRHLYRSPVLNRENTAAGSSRRNRSRGRNSVLPIWYPRT 191
            G G  +R  FG   +GG  R +  +RSP   REN + G +RR R+R  NSVLP WYPRT
Sbjct: 61  MGRGGLVRGNFGIRRTGGGRRGQIQFRSPQ-GRENMSLGVTRRGRARASNSVLPSWYPRT 120

Query: 192 PLRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEYSVSVAGDHQEPSISLVTPK 251
           PLRD++AVVRA+ER RAR+ E  G+  + +P P     L+  V ++G   E   S+VTP 
Sbjct: 121 PLRDVSAVVRAVERRRARMGEGVGRDIE-TPTPQQLGVLDSLVPLSGAQLEHDYSMVTPG 180

Query: 252 PTVG----------KVPKILLGIANQNTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKR 311
           P+VG          KV +ILL I  +NT   + LTPQKKLLNSIDKVEKVVMEE+QK+K 
Sbjct: 181 PSVGFKRPWPPSTAKVHQILLDITRENTGEEDALTPQKKLLNSIDKVEKVVMEEIQKMKS 240

Query: 312 TPSAKKAEREKRVRTLMSFR 320
           TPSAK+AEREKRVRTLMS R
Sbjct: 241 TPSAKRAEREKRVRTLMSMR 258

[Close]

BLAST of Lsi01G018920 vs. TAIR10
Match: AT2G42260.1 (AT2G42260.1 uv-b-insensitive 4)

HSP 1 Score: 202.2 bits (513), Expect = 4.7e-52
Identity = 134/261 (51.34%), Postives = 165/261 (63.22%), Query Frame = 1


Query: 72  MSEARDRLERQVDHAEVFARRRSEGIL-DEQEMNSHLIGTQIARTTT--TTAQQRPTNPS 131
           M EARDR+ERQVD+   F  RRS GIL DE     +L G+ + R  +  T         S
Sbjct: 1   MPEARDRIERQVDYPAAFLNRRSHGILLDEPATQHNLFGSPVQRVPSEATGGLGSIGQGS 60

Query: 132 PGGGGPNLRRTFGSPISGGIGRNRHLYRSPVLNRENTAAGSSRRNRSRGRNSVLPIWYPR 191
             G G  +R  FG   +GG  R +  +RSP   REN + G +RR R+R  NSVLP WYPR
Sbjct: 61  MTGRGGLVRGNFGIRRTGGGRRGQIQFRSPQ-GRENMSLGVTRRGRARASNSVLPSWYPR 120

Query: 192 TPLRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEYSVSVAGDHQEPSISLVTP 251
           TPLRDI+AVVRAIER RAR+ E  G+  + +P P     L+  V ++G H E   S+VTP
Sbjct: 121 TPLRDISAVVRAIERRRARMGEGVGRDIE-TPTPQQLGVLDSLVPLSGAHLEHDYSMVTP 180

Query: 252 KPTVG----------KVPKILLGIANQNTVGAETLTPQKKLLNSIDKVEKVVMEELQKLK 311
            P++G          KV +ILL I  +NT   + LTP+KKLLNSIDKVEKVVMEE+QK+K
Sbjct: 181 GPSIGFKRPWPPSTAKVHQILLDITRENTGEEDALTPEKKLLNSIDKVEKVVMEEIQKMK 240

Query: 312 RTPSAKKAEREKRVRTLMSFR 320
            TPSAK+AEREKRVRTLMS R
Sbjct: 241 STPSAKRAEREKRVRTLMSMR 259

[Close]

BLAST of Lsi01G018920 vs. TAIR10
Match: AT3G57860.1 (AT3G57860.1 UV-B-insensitive 4-like)

HSP 1 Score: 149.1 bits (375), Expect = 4.8e-36
Identity = 121/268 (45.15%), Postives = 147/268 (54.85%), Query Frame = 1


Query: 72  MSEARDRLERQVDHAEVFARRRSEGIL-DEQEMNSHLIGTQIARTTTTTAQQRPTNPSPG 131
           M EARDR ER VD++ +FA RR  GIL DE +    LI             + P NP  G
Sbjct: 1   MPEARDRTERPVDYSTIFANRRRHGILLDEPDSRLSLI-------------ESPVNPDIG 60

Query: 132 --GGGPNLRRTFGSPISGGIGRNRHL-YRSPVLNRENTAAGSSRRNRSRGRNSVLPIWYP 191
             GG   L R   +    G GR  H  +R P   REN    ++RR R  G   +LP WYP
Sbjct: 61  SIGGTGGLVRGNFTTWRPGNGRGGHTPFRLPQ-GRENMPIVTARRGRGGG---LLPSWYP 120

Query: 192 RTPLRDITAVVRAIERTRARLRENEGQGSDNS-----PAPSDERALEYSVSVAGDHQEPS 251
           RTPLRDIT +VRAIER     R   G G D+      P       LE  V ++G+H+   
Sbjct: 121 RTPLRDITHIVRAIER-----RRGAGTGGDDGRVIEIPTHRQVGVLESPVPLSGEHK--- 180

Query: 252 ISLVTPKPTVG----------KVPKILLGIANQNTVG-AETLTPQKKLLNSIDKVEKVVM 311
            S+VTP P+VG          KV K+LL I  +     A  +TP+KKLLNSIDKVEK+VM
Sbjct: 181 CSMVTPGPSVGFKRSCPPSTAKVQKMLLDITKEIAEEEAGFITPEKKLLNSIDKVEKIVM 240

Query: 312 EELQKLKRTPSAKKAEREKRVRTLMSFR 320
            E+QKLK TP AK+ EREKRVRTLM+ R
Sbjct: 241 AEIQKLKSTPQAKREEREKRVRTLMTMR 243

[Close]

BLAST of Lsi01G018920 vs. NCBI nr
Match: gi|700198666|gb|KGN53824.1| (hypothetical protein Csa_4G152290 [Cucumis sativus])

HSP 1 Score: 473.0 bits (1216), Expect = 4.1e-130
Identity = 264/325 (81.23%), Postives = 277/325 (85.23%), Query Frame = 1


Query: 1   MSLSSAQIFAFEICPKFRLLSKQLHLLPSHFSTARLTEESASHQSTAISFGQRLNKYSIE 60
           MSLSSAQIF F+ICPKFRLLS QLHLLPSHFS+  LT+           F          
Sbjct: 1   MSLSSAQIFPFQICPKFRLLSNQLHLLPSHFSSPLLTDRRLPPIHRHFFF---------- 60

Query: 61  AHWNLT-----VFFSIMSEARDRLERQVDHAEVFARRRSEGILDEQEMNSHLIGTQIART 120
             WN       +  SIMSEARDRLERQVD+AEVFARRRSEGILDEQEM S+LIGT IAR 
Sbjct: 61  --WNTPFKPTGISRSIMSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARA 120

Query: 121 TTT-TAQQRPTNPSPGGGGPNLRRTFGSPISGGIGRNRHLYRSPVLNRENTAAGSSRRNR 180
           TTT TAQQRPTNP PGGGG NLRRTFGSPISGGIGRNR LYR+PVL+REN +AGSSRR+R
Sbjct: 121 TTTNTAQQRPTNPGPGGGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSR 180

Query: 181 SRGRNSVLPIWYPRTPLRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEYSVSV 240
           SRGRNSVLPIWYPRTPLRDITAVVRAIERTRARLRENEGQGSD+SPAPSDERALEYSVSV
Sbjct: 181 SRGRNSVLPIWYPRTPLRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSV 240

Query: 241 AGDHQEPSISLVTPKPTVGKVPKILLGIANQNTVGAETLTPQKKLLNSIDKVEKVVMEEL 300
           A DHQEP ISL+TPKPTVGKVPKIL GIAN+NTVGAE LTPQKKLLNSIDKVEKVVMEEL
Sbjct: 241 ASDHQEPIISLLTPKPTVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEEL 300

Query: 301 QKLKRTPSAKKAEREKRVRTLMSFR 320
           QKLKRTPSAKKAEREKRVRTLMSFR
Sbjct: 301 QKLKRTPSAKKAEREKRVRTLMSFR 313

[Close]

BLAST of Lsi01G018920 vs. NCBI nr
Match: gi|659121757|ref|XP_008460799.1| (PREDICTED: protein POLYCHOME [Cucumis melo])

HSP 1 Score: 426.8 bits (1096), Expect = 3.4e-116
Identity = 229/249 (91.97%), Postives = 238/249 (95.58%), Query Frame = 1


Query: 72  MSEARDRLERQVDHAEVFARRRSEGILDEQEMNSHLIGTQIAR-TTTTTAQQRPTNPSPG 131
           MSEARDRLERQVD+AEVFARRRSEGILDEQEM S+LIGT IAR TTTT AQQRPTNP PG
Sbjct: 1   MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTTAAQQRPTNPGPG 60

Query: 132 GGGPNLRRTFGSPISGGIGRNRHLYRSPVLNRENTAAGSSRRNRSRGRNSVLPIWYPRTP 191
           GGG NLRRTFGSPISGGIGRNR LYR+PVL+REN +AGSSRR+RSRGRNSVLPIWYPRTP
Sbjct: 61  GGGANLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 120

Query: 192 LRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEYSVSVAGDHQEPSISLVTPKP 251
           LRDITAVVRAIERTRARLRENEGQGSD+SPAPSDERALEYSVSVA DHQEP ISL+TPKP
Sbjct: 121 LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP 180

Query: 252 TVGKVPKILLGIANQNTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 311
           TVGKVPKIL GIAN+NTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK
Sbjct: 181 TVGKVPKILRGIANENTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 240

Query: 312 RVRTLMSFR 320
           RVRTLMSFR
Sbjct: 241 RVRTLMSFR 249

[Close]

BLAST of Lsi01G018920 vs. NCBI nr
Match: gi|449464890|ref|XP_004150162.1| (PREDICTED: protein POLYCHOME [Cucumis sativus])

HSP 1 Score: 424.5 bits (1090), Expect = 1.7e-115
Identity = 228/249 (91.57%), Postives = 237/249 (95.18%), Query Frame = 1


Query: 72  MSEARDRLERQVDHAEVFARRRSEGILDEQEMNSHLIGTQIARTTTT-TAQQRPTNPSPG 131
           MSEARDRLERQVD+AEVFARRRSEGILDEQEM S+LIGT IAR TTT TAQQRPTNP PG
Sbjct: 1   MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRPTNPGPG 60

Query: 132 GGGPNLRRTFGSPISGGIGRNRHLYRSPVLNRENTAAGSSRRNRSRGRNSVLPIWYPRTP 191
           GGG NLRRTFGSPISGGIGRNR LYR+PVL+REN +AGSSRR+RSRGRNSVLPIWYPRTP
Sbjct: 61  GGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 120

Query: 192 LRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEYSVSVAGDHQEPSISLVTPKP 251
           LRDITAVVRAIERTRARLRENEGQGSD+SPAPSDERALEYSVSVA DHQEP ISL+TPKP
Sbjct: 121 LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP 180

Query: 252 TVGKVPKILLGIANQNTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 311
           TVGKVPKIL GIAN+NTVGAE LTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK
Sbjct: 181 TVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 240

Query: 312 RVRTLMSFR 320
           RVRTLMSFR
Sbjct: 241 RVRTLMSFR 249

[Close]

BLAST of Lsi01G018920 vs. NCBI nr
Match: gi|1009106074|ref|XP_015868489.1| (PREDICTED: protein POLYCHOME-like [Ziziphus jujuba])

HSP 1 Score: 207.6 bits (527), Expect = 3.2e-50
Identity = 142/260 (54.62%), Postives = 165/260 (63.46%), Query Frame = 1


Query: 72  MSEARDRLERQVDHAEVFARRRSEGILDEQEMNSHLIGTQIARTTTTTAQ--QRPTNPSP 131
           M E RDRL R VD A VF R RS G+++E +  S L G+ + + TT T    +R T    
Sbjct: 1   MPEPRDRLSRPVDVAAVFVRWRSRGVVNESDAASDLFGSPMRQQTTATTPIARRVTGFGA 60

Query: 132 GGGGPNLRRTFGSPIS-GGIGRNRHLYRSPVLNRENTAAGSSRRNRSRGRNSVLPIWYPR 191
             GG   R  FG+P +    GRNR    S    RENT AG++RR R R  NSVLP WYPR
Sbjct: 61  TRGGGFGRGIFGTPRTVNRRGRNRPGSSSAA--RENTPAGTARRGRGRVTNSVLPSWYPR 120

Query: 192 TPLRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEYSVSVAGDHQEPSISLVTP 251
           TPLRDITA+V AIER RARLR +EG   + +P   D   L+  VSV+    E  I + +P
Sbjct: 121 TPLRDITAIVTAIERRRARLRGDEGLQVE-TPIYQDPGVLDPPVSVSPAPLEQDIPIASP 180

Query: 252 K---------PTVGKVPKILLGIANQNTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKR 311
                     P+VGKVPKILLGI NQ T  +E LTPQKKLLN+ID VEK V EELQKLKR
Sbjct: 181 STAVRKKGCPPSVGKVPKILLGITNQTTGESECLTPQKKLLNNIDTVEKAVKEELQKLKR 240

Query: 312 TPSAKKAEREKRVRTLMSFR 320
           TPSAKKAEREKRVRTLMS R
Sbjct: 241 TPSAKKAEREKRVRTLMSMR 257

[Close]

BLAST of Lsi01G018920 vs. NCBI nr
Match: gi|225441692|ref|XP_002277253.1| (PREDICTED: protein POLYCHOME [Vitis vinifera])

HSP 1 Score: 206.8 bits (525), Expect = 5.5e-50
Identity = 147/268 (54.85%), Postives = 168/268 (62.69%), Query Frame = 1


Query: 72  MSEARDRLERQVDHAEVFARRRSE--GIL-DEQEMNSHLIGTQIARTTTTTAQQRPTNPS 131
           M E+RDRL R  D AE+F RRRS   GIL D  E +S+L  +   R TTT         +
Sbjct: 1   MPESRDRLSRPEDIAELFLRRRSGILGILADGSERSSNLFASPSRRETTTRTTTLGARGA 60

Query: 132 PG-----GGGPNLRRTFGSP-ISGGIGRNRHLYRSPVLNRENT-AAGSSRRNRSRGRNSV 191
            G     GGG   R  FG+P I  G GR R +YRSP+  RENT A GS RR R R  NSV
Sbjct: 61  TGILASRGGGVG-RGGFGTPRIGTGRGRGRAVYRSPLFGRENTPATGSGRRGRGRSGNSV 120

Query: 192 LPIWYPRTPLRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEYSVSVAGDHQ-E 251
           LP WYPRTPLRDIT VVRAIER RARLRE +GQ  D  P P D   +   +      Q E
Sbjct: 121 LPSWYPRTPLRDITHVVRAIERRRARLREIDGQQID-IPIPQDISDVHDPILPPSSAQLE 180

Query: 252 PSISLVTPKP---------TVGKVPKILLGIANQNTVGAETLTPQKKLLNSIDKVEKVVM 311
             IS+++P P          VGKVPKILL I +Q   G++ LTPQKKLLNSID VEK VM
Sbjct: 181 QDISMISPSPTSGMKLVPKAVGKVPKILLDITDQTGGGSDFLTPQKKLLNSIDTVEKAVM 240

Query: 312 EELQKLKRTPSAKKAEREKRVRTLMSFR 320
           +EL KLKRTPSAK+AE+EKRVRTLMS R
Sbjct: 241 DELGKLKRTPSAKRAEQEKRVRTLMSMR 266

The following BLAST results are available for this feature:

BLAST of Lsi01G018920 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PYM_ARATH	8.4e-51	51.34	Protein POLYCHOME OS=Arabidopsis thaliana GN=PYM PE=1 SV=1	[more]
GIG1_ARATH	8.5e-35	45.15	Protein GIGAS CELL1 OS=Arabidopsis thaliana GN=GIG1 PE=1 SV=1	[more]

BLAST of Lsi01G018920 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KY99_CUCSA	2.8e-130	81.23	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G152290 PE=4 SV=1	[more]
F6HL68_VITVI	3.8e-50	54.85	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g07790 PE=4 SV=...	[more]
V4LQQ2_EUTSA	9.4e-49	51.35	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10017150mg PE=4 SV=1	[more]
V4RKR5_9ROSI	6.1e-48	53.01	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005700mg PE=4 SV=1	[more]
D7LI35_ARALL	7.9e-48	50.77	Polychome, UV-B-insensitive 4 OS=Arabidopsis lyrata subsp. lyrata GN=UVI4 PE=4 S...	[more]

BLAST of Lsi01G018920 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G42260.1	4.7e-52	51.34	uv-b-insensitive 4	[more]
AT3G57860.1	4.8e-36	45.15	UV-B-insensitive 4-like	[more]

BLAST of Lsi01G018920 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198666\|gb\|KGN53824.1\|	4.1e-130	81.23	hypothetical protein Csa_4G152290 [Cucumis sativus]	[more]
gi\|659121757\|ref\|XP_008460799.1\|	3.4e-116	91.97	PREDICTED: protein POLYCHOME [Cucumis melo]	[more]
gi\|449464890\|ref\|XP_004150162.1\|	1.7e-115	91.57	PREDICTED: protein POLYCHOME [Cucumis sativus]	[more]
gi\|1009106074\|ref\|XP_015868489.1\|	3.2e-50	54.62	PREDICTED: protein POLYCHOME-like [Ziziphus jujuba]	[more]
gi\|225441692\|ref\|XP_002277253.1\|	5.5e-50	54.85	PREDICTED: protein POLYCHOME [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042023	DNA endoreduplication
biological_process	GO:0009960	endosperm development
biological_process	GO:0009561	megagametogenesis
biological_process	GO:1904667	negative regulation of ubiquitin protein ligase activity
biological_process	GO:1900426	positive regulation of defense response to bacterium
biological_process	GO:0010224	response to UV-B
biological_process	GO:0010091	trichome branching
biological_process	GO:0008150	biological_process
biological_process	GO:0044699	single-organism process
biological_process	GO:0051783	regulation of nuclear division
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G018920.1	Lsi01G018920.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 191..211 scor
None	No IPR available	PANTHER	PTHR35119	FAMILY NOT NAMED	coord: 22..104 score: 2.4E-50coord: 138..319 score: 2.4
None	No IPR available	PANTHER	PTHR35119:SF1	PROTEIN GIGAS CELL1-RELATED	coord: 22..104 score: 2.4E-50coord: 138..319 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi01G018920	Csa4G152290	Cucumber (Chinese Long) v2	culsiB260
Lsi01G018920	CSPI04G10380	Wild cucumber (PI 183967)	cpilsiB259
Lsi01G018920	Cucsa.038040	Cucumber (Gy14) v1	cgylsiB012
Lsi01G018920	CmaCh03G000790	Cucurbita maxima (Rimu)	cmalsiB598
Lsi01G018920	CmaCh07G013150	Cucurbita maxima (Rimu)	cmalsiB790
Lsi01G018920	CmoCh03G000800	Cucurbita moschata (Rifu)	cmolsiB583
Lsi01G018920	CmoCh07G013590	Cucurbita moschata (Rifu)	cmolsiB778
Lsi01G018920	Cla000743	Watermelon (97103) v1	lsiwmB153
Lsi01G018920	MELO3C023180	Melon (DHL92) v3.5.1	lsimeB152
Lsi01G018920	ClCG04G000340	Watermelon (Charleston Gray)	lsiwcgB135
Lsi01G018920	MELO3C023180.2	Melon (DHL92) v3.6.1	lsimedB166
Lsi01G018920	Cla97C04G068720	Watermelon (97103) v2	lsiwmbB133
Lsi01G018920	Bhi03G002127	Wax gourd	lsiwgoB185
Lsi01G018920	Cp4.1LG10g11700	Cucurbita pepo (Zucchini)	cpelsiB055
Lsi01G018920	CsGy4G010070	Cucumber (Gy14) v2	cgyblsiB245
Lsi01G018920	Carg22466	Silver-seed gourd	carlsiB170
Lsi01G018920	CsaV3_4G010540	Cucumber (Chinese Long) v3	cuclsiB281

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi01G018920	Cucurbita maxima (Rimu)	cmalsiB792
Lsi01G018920	Cucurbita moschata (Rifu)	cmolsiB780
Lsi01G018920	Cucurbita pepo (Zucchini)	cpelsiB392
Lsi01G018920	Silver-seed gourd	carlsiB259
Lsi01G018920	Silver-seed gourd	carlsiB260
Lsi01G018920	Wax gourd	lsiwgoB173