Cla000743 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla000743
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Polychome UV-B-insensitive 4 (AHRD V1 ***- D7LI35_ARALL)
Location	Chr4 : 3365442 .. 3367844 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGAAGCAAGAGATAGATTGGAGAGGCAAGTGGATCATGCCGAGGTATTTGCTCGTCGGAGATCCGAAGGTATATTGGACGAGCAAGAAATGAATTCTCATTTGATAGGTACTCCGATTGCACGCGCTACAACGACGCCTACTGCTCAACAAAGACCTACGAATCCCGGCCCTGGTGGAGGTGGTTCGAATCCCAGACGCACTTTTGGTTCTCCCATTTCTGGTGGAATTGGACGTAATAGATTTCTTTACAGATCTCCAGTGTTTAACCGCGAGAATACGGCGGCTTCGAGTTCCCGGCGGAATAGATCTCGGGGTAGAAACAGTGTGTTACCGATTTGGTACCCAAGAACCCCTCTCCGCGACATAACTGCAGTTGTGAGGGTAATGACTAATTCCCCTGTTACTTTGATATTGTTCTGCTAAATCTTTCGAAATCTTTCAATTTTTTGGTTTATTGTGCATTTGATTCATATTGTTTATGGAAAACCTATTCTCATTGTTATCACATATGGTCTTTGGTATGCATATACGTACGTACTCCAATAGCTGTAAGATTTGTTCTCTGATACAGTATATTTGTTGGATTTGTTCTAATTTGAATTTGCTTGATCTTCCGGAAACCCCCTTTTGATTTTTCTGGTGTAGTCGTTGTGATTCTTGTTTCTGTTTTTCAGTTGGTAAGCATTTGTTTTGATTTGATTTAATTGAATTGATTTTTAACCAAAAATGTCATTGCATATGTTTAATCCTTTTTTGAGAATCCTCAGATTGGATCACTTTCCTTTCTCTTTAAGTTAATTAATGAATAAATTTTCAGTGTTTTTAAGCTATGTACTACCTACCTGTTTGTCTAAAAAGAAGATTCTTTTGGTTTTGTAACATCCATGCCCAATGATTTCATATGAAACATCAACAGTCTGGATAATGAGATCCTGTCCACCATTAATTAAAGTTAACATAATTCGTCTCCTTTTTAGTTTTTATATTCATTGTTTTCTTGGATTCCAATCGGTTTTTAGGCCTCATTTTCAGCTGTTATTAGAAATACTTTTTGGTGGGCTCAATATGCTTCGGCTGGTTACTAGGATGTGCTGACTAGGTAGTCCAATCAACATTTTGGGCCTATGTTAAAGCTGTGATTTGGATGCAAATTGCTGATTTAGTAGCCAATAAATTTTTTTAAAAATTATGTTTGAAAAGCATATTAACACTGATGTTATCGTTACTTGTGGGACATGTGTAGAATGCTTATTAAAGCATGCGTTGACACTTGTAAACTACTTGACCTGACGTTTCAATGTAGTAATATTAATTAATTTATTTTGTTTGAAAAGTTTAATGGACGGAAAAATATATACTTTGAGTGAAAAATATCAAATTAATTTTTCAAGCATTTAGGTGCATATATATTATTGACCTTAAATTTGTTAAGATCACAGAATTCCTTTTTAAATAACATATTGTAAGACATTATGCATCACTCTTTCTCAGATATTCTCATGCACTTGAAGCAAACTATTATAAGTAAAAGTCTTTGTAATGTATAAAAATGATTATATGATTTTAAAAAAATGTATAAAGTAAATGTGCCATTGCTTTTGGTGTCCTCATTTTTCAACAAATATCATATCACGTTATAATGCATCATGTCTTCTCCATGTCACGTGTTTGTGTCTGTTGTACCATTCATCTTAAATCTTTACTACTTTTTAAGTTGATTCACTGATAATTTTGCTGTCAACGGTAAACATTCCCTCTGTCTTTTAGAAGTCTTCTTTCAACTATGTTCTTTCACTAATCAAAGCGAATTCTGTTTCAAGCATTGCATCTAGACTCCAAGTTCTTTCCTTTCCAAATGTTCCAACTTATTTTGTTTTATCCTGCACGTGGGCATTTGGATATTTAGTTACTGCTCCATGTTATTCAATATCACCTGTGTTTTCCATAGAAATCTCCTTTCCTAGTTTTTCATTTGAGGCAATTGAAAGGTCATTTAGTTAATATGGAGAGAATGTTATTGTTTTTTGTAATCAGGCAATTGAAAGGACAAGAGCTCGCTTGAGAGAAAACGAAGGCCAAGGAAGTGACAATAGTCCTGCTCCCTCGGACGAAAGAGCTTTAGAGTATAGCGTGTCTGTGGCAGGTGATCATCAAGAGCCAAGCATTTCTCTGGTCACCCCAAAACCAACCGTAGGTAAAGTTCCAAAGATAATTCTTGGAATCGCGAATCAGAATGTGGTAGGGGCCGAGACTCTCACTCCCCAGAAGAAGCTCTTGAACTCCATAGACAAAGTGGAGAAAGTAGTAATGGAGGAATTGCAGAAATTGAAAAAAACTCCCAGTGCGAAGAAAGCAGAGAGGGAGAAAAGGGTTCGTACTTTAATGTCGTTTCGTTGA

mRNA sequence

ATGTCGGAAGCAAGAGATAGATTGGAGAGGCAAGTGGATCATGCCGAGGTATTTGCTCGTCGGAGATCCGAAGGTATATTGGACGAGCAAGAAATGAATTCTCATTTGATAGGTACTCCGATTGCACGCGCTACAACGACGCCTACTGCTCAACAAAGACCTACGAATCCCGGCCCTGGTGGAGGTGGTTCGAATCCCAGACGCACTTTTGGTTCTCCCATTTCTGGTGGAATTGGACGTAATAGATTTCTTTACAGATCTCCAGTGTTTAACCGCGAGAATACGGCGGCTTCGAGTTCCCGGCGGAATAGATCTCGGGGTAGAAACAGTGTGTTACCGATTTGGTACCCAAGAACCCCTCTCCGCGACATAACTGCAGTTGTGAGGGCAATTGAAAGGACAAGAGCTCGCTTGAGAGAAAACGAAGGCCAAGGAAGTGACAATAGTCCTGCTCCCTCGGACGAAAGAGCTTTAGAGTATAGCGTGTCTGTGGCAGGTGATCATCAAGAGCCAAGCATTTCTCTGGTCACCCCAAAACCAACCGTAGGTAAAGTTCCAAAGATAATTCTTGGAATCGCGAATCAGAATGTGGTAGGGGCCGAGACTCTCACTCCCCAGAAGAAGCTCTTGAACTCCATAGACAAAGTGGAGAAAGTAGTAATGGAGGAATTGCAGAAATTGAAAAAAACTCCCAGTGCGAAGAAAGCAGAGAGGGAGAAAAGGGTTCGTACTTTAATGTCGTTTCGTTGA

Coding sequence (CDS)

ATGTCGGAAGCAAGAGATAGATTGGAGAGGCAAGTGGATCATGCCGAGGTATTTGCTCGTCGGAGATCCGAAGGTATATTGGACGAGCAAGAAATGAATTCTCATTTGATAGGTACTCCGATTGCACGCGCTACAACGACGCCTACTGCTCAACAAAGACCTACGAATCCCGGCCCTGGTGGAGGTGGTTCGAATCCCAGACGCACTTTTGGTTCTCCCATTTCTGGTGGAATTGGACGTAATAGATTTCTTTACAGATCTCCAGTGTTTAACCGCGAGAATACGGCGGCTTCGAGTTCCCGGCGGAATAGATCTCGGGGTAGAAACAGTGTGTTACCGATTTGGTACCCAAGAACCCCTCTCCGCGACATAACTGCAGTTGTGAGGGCAATTGAAAGGACAAGAGCTCGCTTGAGAGAAAACGAAGGCCAAGGAAGTGACAATAGTCCTGCTCCCTCGGACGAAAGAGCTTTAGAGTATAGCGTGTCTGTGGCAGGTGATCATCAAGAGCCAAGCATTTCTCTGGTCACCCCAAAACCAACCGTAGGTAAAGTTCCAAAGATAATTCTTGGAATCGCGAATCAGAATGTGGTAGGGGCCGAGACTCTCACTCCCCAGAAGAAGCTCTTGAACTCCATAGACAAAGTGGAGAAAGTAGTAATGGAGGAATTGCAGAAATTGAAAAAAACTCCCAGTGCGAAGAAAGCAGAGAGGGAGAAAAGGGTTCGTACTTTAATGTCGTTTCGTTGA

Protein sequence

MSEARDRLERQVDHAEVFARRRSEGILDEQEMNSHLIGTPIARATTTPTAQQRPTNPGPGGGGSNPRRTFGSPISGGIGRNRFLYRSPVFNRENTAASSSRRNRSRGRNSVLPIWYPRTPLRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEYSVSVAGDHQEPSISLVTPKPTVGKVPKIILGIANQNVVGAETLTPQKKLLNSIDKVEKVVMEELQKLKKTPSAKKAEREKRVRTLMSFR

Homology

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BLAST of Cla000743 vs. Swiss-Prot
Match: PYM_ARATH (Protein POLYCHOME OS=Arabidopsis thaliana GN=PYM PE=1 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.0e-56
Identity = 132/261 (50.57%), Postives = 161/261 (61.69%), Query Frame = 1


Query: 1   MSEARDRLERQVDHAEVFARRRSEGIL-DEQEMNSHLIGTPIARATTTPTAQQRPTNPGP 60
           M EARDR+ERQVD+   F  RRS GIL DE     +L G+P+ R  +  T        G 
Sbjct: 1   MPEARDRIERQVDYPAAFLNRRSHGILLDEPATQHNLFGSPVQRVPSEATGGLGSIGQGS 60

Query: 61  -GGGGSNPRRTFGSPISGGIGRNRFLYRSPVFNRENTAASSSRRNRSRGRNSVLPIWYPR 120
             G G   R  FG   +GG  R +  +RSP   REN +   +RR R+R  NSVLP WYPR
Sbjct: 61  MTGRGGLVRGNFGIRRTGGGRRGQIQFRSPQ-GRENMSLGVTRRGRARASNSVLPSWYPR 120

Query: 121 TPLRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEYSVSVAGDHQEPSISLVTP 180
           TPLRDI+AVVRAIER RAR+ E  G+  + +P P     L+  V ++G H E   S+VTP
Sbjct: 121 TPLRDISAVVRAIERRRARMGEGVGRDIE-TPTPQQLGVLDSLVPLSGAHLEHDYSMVTP 180

Query: 181 KPTVG----------KVPKIILGIANQNVVGAETLTPQKKLLNSIDKVEKVVMEELQKLK 240
            P++G          KV +I+L I  +N    + LTP+KKLLNSIDKVEKVVMEE+QK+K
Sbjct: 181 GPSIGFKRPWPPSTAKVHQILLDITRENTGEEDALTPEKKLLNSIDKVEKVVMEEIQKMK 240

Query: 241 KTPSAKKAEREKRVRTLMSFR 250
            TPSAK+AEREKRVRTLMS R
Sbjct: 241 STPSAKRAEREKRVRTLMSMR 259

[Close]

BLAST of Cla000743 vs. Swiss-Prot
Match: GIG1_ARATH (Protein GIGAS CELL1 OS=Arabidopsis thaliana GN=GIG1 PE=1 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 4.4e-39
Identity = 116/266 (43.61%), Postives = 142/266 (53.38%), Query Frame = 1


Query: 1   MSEARDRLERQVDHAEVFARRRSEGIL-DEQEMNSHLIGTPIARATTTPTAQQRPTNPGP 60
           M EARDR ER VD++ +FA RR  GIL DE +    LI +P+            P     
Sbjct: 1   MPEARDRTERPVDYSTIFANRRRHGILLDEPDSRLSLIESPV-----------NPDIGSI 60

Query: 61  GGGGSNPRRTFGSPISGGIGRNRFLYRSPVFNRENTAASSSRRNRSRGRNSVLPIWYPRT 120
           GG G   R  F +   G        +R P   REN    ++RR R  G   +LP WYPRT
Sbjct: 61  GGTGGLVRGNFTTWRPGNGRGGHTPFRLPQ-GRENMPIVTARRGRGGG---LLPSWYPRT 120

Query: 121 PLRDITAVVRAIERTRARLRENEGQGSDNS-----PAPSDERALEYSVSVAGDHQEPSIS 180
           PLRDIT +VRAIER     R   G G D+      P       LE  V ++G+H+    S
Sbjct: 121 PLRDITHIVRAIER-----RRGAGTGGDDGRVIEIPTHRQVGVLESPVPLSGEHK---CS 180

Query: 181 LVTPKPTVG----------KVPKIILGIANQNVVG-AETLTPQKKLLNSIDKVEKVVMEE 240
           +VTP P+VG          KV K++L I  +     A  +TP+KKLLNSIDKVEK+VM E
Sbjct: 181 MVTPGPSVGFKRSCPPSTAKVQKMLLDITKEIAEEEAGFITPEKKLLNSIDKVEKIVMAE 240

Query: 241 LQKLKKTPSAKKAEREKRVRTLMSFR 250
           +QKLK TP AK+ EREKRVRTLM+ R
Sbjct: 241 IQKLKSTPQAKREEREKRVRTLMTMR 243

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BLAST of Cla000743 vs. TrEMBL
Match: A0A0A0KY99_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G152290 PE=4 SV=1)

HSP 1 Score: 445.7 bits (1145), Expect = 3.8e-122
Identity = 226/249 (90.76%), Postives = 238/249 (95.58%), Query Frame = 1


Query: 1   MSEARDRLERQVDHAEVFARRRSEGILDEQEMNSHLIGTPIARATTTPTAQQRPTNPGPG 60
           MSEARDRLERQVD+AEVFARRRSEGILDEQEM S+LIGTPIARATTT TAQQRPTNPGPG
Sbjct: 65  MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRPTNPGPG 124

Query: 61  GGGSNPRRTFGSPISGGIGRNRFLYRSPVFNRENTAASSSRRNRSRGRNSVLPIWYPRTP 120
           GGG+N RRTFGSPISGGIGRNRFLYR+PV +REN +A SSRR+RSRGRNSVLPIWYPRTP
Sbjct: 125 GGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 184

Query: 121 LRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEYSVSVAGDHQEPSISLVTPKP 180
           LRDITAVVRAIERTRARLRENEGQGSD+SPAPSDERALEYSVSVA DHQEP ISL+TPKP
Sbjct: 185 LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP 244

Query: 181 TVGKVPKIILGIANQNVVGAETLTPQKKLLNSIDKVEKVVMEELQKLKKTPSAKKAEREK 240
           TVGKVPKI+ GIAN+N VGAE LTPQKKLLNSIDKVEKVVMEELQKLK+TPSAKKAEREK
Sbjct: 245 TVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 304

Query: 241 RVRTLMSFR 250
           RVRTLMSFR
Sbjct: 305 RVRTLMSFR 313

[Close]

BLAST of Cla000743 vs. TrEMBL
Match: F6HL68_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g07790 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 1.2e-56
Identity = 147/267 (55.06%), Postives = 171/267 (64.04%), Query Frame = 1


Query: 1   MSEARDRLERQVDHAEVFARRRSE--GIL-DEQEMNSHLIGTPIARATTTPTAQ---QRP 60
           M E+RDRL R  D AE+F RRRS   GIL D  E +S+L  +P  R TTT T     +  
Sbjct: 1   MPESRDRLSRPEDIAELFLRRRSGILGILADGSERSSNLFASPSRRETTTRTTTLGARGA 60

Query: 61  TNPGPGGGGSNPRRTFGSP-ISGGIGRNRFLYRSPVFNRENTAASSS-RRNRSRGRNSVL 120
           T      GG   R  FG+P I  G GR R +YRSP+F RENT A+ S RR R R  NSVL
Sbjct: 61  TGILASRGGGVGRGGFGTPRIGTGRGRGRAVYRSPLFGRENTPATGSGRRGRGRSGNSVL 120

Query: 121 PIWYPRTPLRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEYSVSVAGDHQ-EP 180
           P WYPRTPLRDIT VVRAIER RARLRE +GQ  D  P P D   +   +      Q E 
Sbjct: 121 PSWYPRTPLRDITHVVRAIERRRARLREIDGQQID-IPIPQDISDVHDPILPPSSAQLEQ 180

Query: 181 SISLVTPKPT---------VGKVPKIILGIANQNVVGAETLTPQKKLLNSIDKVEKVVME 240
            IS+++P PT         VGKVPKI+L I +Q   G++ LTPQKKLLNSID VEK VM+
Sbjct: 181 DISMISPSPTSGMKLVPKAVGKVPKILLDITDQTGGGSDFLTPQKKLLNSIDTVEKAVMD 240

Query: 241 ELQKLKKTPSAKKAEREKRVRTLMSFR 250
           EL KLK+TPSAK+AE+EKRVRTLMS R
Sbjct: 241 ELGKLKRTPSAKRAEQEKRVRTLMSMR 266

[Close]

BLAST of Cla000743 vs. TrEMBL
Match: D7LI35_ARALL (Polychome, UV-B-insensitive 4 OS=Arabidopsis lyrata subsp. lyrata GN=UVI4 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 1.3e-53
Identity = 129/260 (49.62%), Postives = 161/260 (61.92%), Query Frame = 1


Query: 1   MSEARDRLERQVDHAEVFARRRSEGIL-DEQEMNSHLIGTPIARATTTPTAQQRPTNPGP 60
           M EARDR+ER VD+   F  RRS GIL DE   + +L G+P+ R  +  T          
Sbjct: 1   MPEARDRIERPVDYPAAFLNRRSHGILLDEPATHHNLFGSPVQRVPSEATGLGSVGQGSM 60

Query: 61  GGGGSNPRRTFGSPISGGIGRNRFLYRSPVFNRENTAASSSRRNRSRGRNSVLPIWYPRT 120
            G G   R  FG   +GG  R +  +RSP   REN +   +RR R+R  NSVLP WYPRT
Sbjct: 61  MGRGGLVRGNFGIRRTGGGRRGQIQFRSPQ-GRENMSLGVTRRGRARASNSVLPSWYPRT 120

Query: 121 PLRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEYSVSVAGDHQEPSISLVTPK 180
           PLRD++AVVRA+ER RAR+ E  G+  + +P P     L+  V ++G   E   S+VTP 
Sbjct: 121 PLRDVSAVVRAVERRRARMGEGVGRDIE-TPTPQQLGVLDSLVPLSGAQLEHDYSMVTPG 180

Query: 181 PTVG----------KVPKIILGIANQNVVGAETLTPQKKLLNSIDKVEKVVMEELQKLKK 240
           P+VG          KV +I+L I  +N    + LTPQKKLLNSIDKVEKVVMEE+QK+K 
Sbjct: 181 PSVGFKRPWPPSTAKVHQILLDITRENTGEEDALTPQKKLLNSIDKVEKVVMEEIQKMKS 240

Query: 241 TPSAKKAEREKRVRTLMSFR 250
           TPSAK+AEREKRVRTLMS R
Sbjct: 241 TPSAKRAEREKRVRTLMSMR 258

[Close]

BLAST of Cla000743 vs. TrEMBL
Match: V4LQQ2_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10017150mg PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 6.4e-53
Identity = 129/260 (49.62%), Postives = 160/260 (61.54%), Query Frame = 1


Query: 1   MSEARDRLERQVDHAEVFARRRSEGILDEQEMNSH-LIGTPIARATTTPTAQQRPTNPGP 60
           M EARDR+ER VD+   F  RRS GIL +  +  H L G+P+ R  + P           
Sbjct: 1   MPEARDRIERPVDYPAAFLSRRSNGILHDDPVTQHSLFGSPVQRVPSEPVI--------- 60

Query: 61  GGGGSNPRRTFGSPISGGIGRNRFLYRSPVFNRENTAASSSRRNRSRGRNSVLPIWYPRT 120
            G G   R  FG   +GG  R +  +RSP   REN +   +RR R+R   SVLP WYPRT
Sbjct: 61  -GRGGLVRGNFGIRRTGGGRRGQTQFRSPQ-GRENMSLGVARRGRARASTSVLPSWYPRT 120

Query: 121 PLRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEYSVSVAGDHQEPSISLVTPK 180
           PLRD++ VVRAIER RAR+ E  G+  + +P P     L+  V ++G   E + S+VTP 
Sbjct: 121 PLRDVSGVVRAIERRRARMGEGVGRDIE-TPTPQQLGVLDSLVPLSGAQLEHNYSMVTPG 180

Query: 181 PTVG----------KVPKIILGIANQNVVGAETLTPQKKLLNSIDKVEKVVMEELQKLKK 240
           P+VG          KV KI+L I  +N    E+LTPQKKLLNSIDKVEKVVMEE+QK+K 
Sbjct: 181 PSVGFKRPWPPSAAKVHKILLDITRENTGEEESLTPQKKLLNSIDKVEKVVMEEIQKMKS 240

Query: 241 TPSAKKAEREKRVRTLMSFR 250
           TPSAK+AEREKRVRTLMS R
Sbjct: 241 TPSAKRAEREKRVRTLMSMR 248

[Close]

BLAST of Cla000743 vs. TrEMBL
Match: R0HDW2_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10023892mg PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.1e-52
Identity = 127/260 (48.85%), Postives = 159/260 (61.15%), Query Frame = 1


Query: 1   MSEARDRLERQVDHAEVFARRRSEGILDEQEMNSH-LIGTPIARATTTPTAQQRPTNPGP 60
           M EARDR+ER VD+   F  RRS G+L ++    H L G+P+ R     T          
Sbjct: 1   MPEARDRIERPVDYPAAFLNRRSNGVLLDEPATQHSLFGSPVQRVPPEATGLGSIGQGSM 60

Query: 61  GGGGSNPRRTFGSPISGGIGRNRFLYRSPVFNRENTAASSSRRNRSRGRNSVLPIWYPRT 120
            G G   R  FG   +GG  R +  +RSP   RENT+   +RR R+R   SVLP WYPRT
Sbjct: 61  TGRGGLVRGNFGIRRTGGGRRGQIQFRSPQ-GRENTSLGVTRRGRARAATSVLPSWYPRT 120

Query: 121 PLRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEYSVSVAGDHQEPSISLVTPK 180
           PLRD+++VVRAIER RAR+ E  G+  + +P P     L+  V ++G   E   S+VTP 
Sbjct: 121 PLRDVSSVVRAIERRRARMGEGVGRDIE-TPTPQQLGVLDSLVPLSGAQLEHDYSMVTPG 180

Query: 181 PTVG----------KVPKIILGIANQNVVGAETLTPQKKLLNSIDKVEKVVMEELQKLKK 240
           P+VG          KV +I+L I  +N    + LTPQKKLLNSIDKVEKVVMEE+QK+K 
Sbjct: 181 PSVGFKRPWPPSTAKVHQILLDITRENTGEEDALTPQKKLLNSIDKVEKVVMEEIQKMKS 240

Query: 241 TPSAKKAEREKRVRTLMSFR 250
           TPSAK+AEREKRVRTLMS R
Sbjct: 241 TPSAKRAEREKRVRTLMSMR 258

[Close]

BLAST of Cla000743 vs. NCBI nr
Match: gi|659121757|ref|XP_008460799.1| (PREDICTED: protein POLYCHOME [Cucumis melo])

HSP 1 Score: 446.4 bits (1147), Expect = 3.2e-122
Identity = 226/249 (90.76%), Postives = 238/249 (95.58%), Query Frame = 1


Query: 1   MSEARDRLERQVDHAEVFARRRSEGILDEQEMNSHLIGTPIARATTTPTAQQRPTNPGPG 60
           MSEARDRLERQVD+AEVFARRRSEGILDEQEM S+LIGTPIARATTT  AQQRPTNPGPG
Sbjct: 1   MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTTAAQQRPTNPGPG 60

Query: 61  GGGSNPRRTFGSPISGGIGRNRFLYRSPVFNRENTAASSSRRNRSRGRNSVLPIWYPRTP 120
           GGG+N RRTFGSPISGGIGRNRFLYR+PV +REN +A SSRR+RSRGRNSVLPIWYPRTP
Sbjct: 61  GGGANLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 120

Query: 121 LRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEYSVSVAGDHQEPSISLVTPKP 180
           LRDITAVVRAIERTRARLRENEGQGSD+SPAPSDERALEYSVSVA DHQEP ISL+TPKP
Sbjct: 121 LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP 180

Query: 181 TVGKVPKIILGIANQNVVGAETLTPQKKLLNSIDKVEKVVMEELQKLKKTPSAKKAEREK 240
           TVGKVPKI+ GIAN+N VGAETLTPQKKLLNSIDKVEKVVMEELQKLK+TPSAKKAEREK
Sbjct: 181 TVGKVPKILRGIANENTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 240

Query: 241 RVRTLMSFR 250
           RVRTLMSFR
Sbjct: 241 RVRTLMSFR 249

[Close]

BLAST of Cla000743 vs. NCBI nr
Match: gi|449464890|ref|XP_004150162.1| (PREDICTED: protein POLYCHOME [Cucumis sativus])

HSP 1 Score: 445.7 bits (1145), Expect = 5.5e-122
Identity = 226/249 (90.76%), Postives = 238/249 (95.58%), Query Frame = 1


Query: 1   MSEARDRLERQVDHAEVFARRRSEGILDEQEMNSHLIGTPIARATTTPTAQQRPTNPGPG 60
           MSEARDRLERQVD+AEVFARRRSEGILDEQEM S+LIGTPIARATTT TAQQRPTNPGPG
Sbjct: 1   MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRPTNPGPG 60

Query: 61  GGGSNPRRTFGSPISGGIGRNRFLYRSPVFNRENTAASSSRRNRSRGRNSVLPIWYPRTP 120
           GGG+N RRTFGSPISGGIGRNRFLYR+PV +REN +A SSRR+RSRGRNSVLPIWYPRTP
Sbjct: 61  GGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 120

Query: 121 LRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEYSVSVAGDHQEPSISLVTPKP 180
           LRDITAVVRAIERTRARLRENEGQGSD+SPAPSDERALEYSVSVA DHQEP ISL+TPKP
Sbjct: 121 LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP 180

Query: 181 TVGKVPKIILGIANQNVVGAETLTPQKKLLNSIDKVEKVVMEELQKLKKTPSAKKAEREK 240
           TVGKVPKI+ GIAN+N VGAE LTPQKKLLNSIDKVEKVVMEELQKLK+TPSAKKAEREK
Sbjct: 181 TVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 240

Query: 241 RVRTLMSFR 250
           RVRTLMSFR
Sbjct: 241 RVRTLMSFR 249

[Close]

BLAST of Cla000743 vs. NCBI nr
Match: gi|700198666|gb|KGN53824.1| (hypothetical protein Csa_4G152290 [Cucumis sativus])

HSP 1 Score: 445.7 bits (1145), Expect = 5.5e-122
Identity = 226/249 (90.76%), Postives = 238/249 (95.58%), Query Frame = 1


Query: 1   MSEARDRLERQVDHAEVFARRRSEGILDEQEMNSHLIGTPIARATTTPTAQQRPTNPGPG 60
           MSEARDRLERQVD+AEVFARRRSEGILDEQEM S+LIGTPIARATTT TAQQRPTNPGPG
Sbjct: 65  MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRPTNPGPG 124

Query: 61  GGGSNPRRTFGSPISGGIGRNRFLYRSPVFNRENTAASSSRRNRSRGRNSVLPIWYPRTP 120
           GGG+N RRTFGSPISGGIGRNRFLYR+PV +REN +A SSRR+RSRGRNSVLPIWYPRTP
Sbjct: 125 GGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 184

Query: 121 LRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEYSVSVAGDHQEPSISLVTPKP 180
           LRDITAVVRAIERTRARLRENEGQGSD+SPAPSDERALEYSVSVA DHQEP ISL+TPKP
Sbjct: 185 LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP 244

Query: 181 TVGKVPKIILGIANQNVVGAETLTPQKKLLNSIDKVEKVVMEELQKLKKTPSAKKAEREK 240
           TVGKVPKI+ GIAN+N VGAE LTPQKKLLNSIDKVEKVVMEELQKLK+TPSAKKAEREK
Sbjct: 245 TVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 304

Query: 241 RVRTLMSFR 250
           RVRTLMSFR
Sbjct: 305 RVRTLMSFR 313

[Close]

BLAST of Cla000743 vs. NCBI nr
Match: gi|225441692|ref|XP_002277253.1| (PREDICTED: protein POLYCHOME [Vitis vinifera])

HSP 1 Score: 228.0 bits (580), Expect = 1.8e-56
Identity = 147/267 (55.06%), Postives = 171/267 (64.04%), Query Frame = 1


Query: 1   MSEARDRLERQVDHAEVFARRRSE--GIL-DEQEMNSHLIGTPIARATTTPTAQ---QRP 60
           M E+RDRL R  D AE+F RRRS   GIL D  E +S+L  +P  R TTT T     +  
Sbjct: 1   MPESRDRLSRPEDIAELFLRRRSGILGILADGSERSSNLFASPSRRETTTRTTTLGARGA 60

Query: 61  TNPGPGGGGSNPRRTFGSP-ISGGIGRNRFLYRSPVFNRENTAASSS-RRNRSRGRNSVL 120
           T      GG   R  FG+P I  G GR R +YRSP+F RENT A+ S RR R R  NSVL
Sbjct: 61  TGILASRGGGVGRGGFGTPRIGTGRGRGRAVYRSPLFGRENTPATGSGRRGRGRSGNSVL 120

Query: 121 PIWYPRTPLRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEYSVSVAGDHQ-EP 180
           P WYPRTPLRDIT VVRAIER RARLRE +GQ  D  P P D   +   +      Q E 
Sbjct: 121 PSWYPRTPLRDITHVVRAIERRRARLREIDGQQID-IPIPQDISDVHDPILPPSSAQLEQ 180

Query: 181 SISLVTPKPT---------VGKVPKIILGIANQNVVGAETLTPQKKLLNSIDKVEKVVME 240
            IS+++P PT         VGKVPKI+L I +Q   G++ LTPQKKLLNSID VEK VM+
Sbjct: 181 DISMISPSPTSGMKLVPKAVGKVPKILLDITDQTGGGSDFLTPQKKLLNSIDTVEKAVMD 240

Query: 241 ELQKLKKTPSAKKAEREKRVRTLMSFR 250
           EL KLK+TPSAK+AE+EKRVRTLMS R
Sbjct: 241 ELGKLKRTPSAKRAEQEKRVRTLMSMR 266

[Close]

BLAST of Cla000743 vs. NCBI nr
Match: gi|1009106074|ref|XP_015868489.1| (PREDICTED: protein POLYCHOME-like [Ziziphus jujuba])

HSP 1 Score: 224.2 bits (570), Expect = 2.6e-55
Identity = 140/260 (53.85%), Postives = 165/260 (63.46%), Query Frame = 1


Query: 1   MSEARDRLERQVDHAEVFARRRSEGILDEQEMNSHLIGTPIARATTTPTA-QQRPTNPGP 60
           M E RDRL R VD A VF R RS G+++E +  S L G+P+ + TT  T   +R T  G 
Sbjct: 1   MPEPRDRLSRPVDVAAVFVRWRSRGVVNESDAASDLFGSPMRQQTTATTPIARRVTGFGA 60

Query: 61  GGGGSNPRRTFGSPIS-GGIGRNRFLYRSPVFNRENTAASSSRRNRSRGRNSVLPIWYPR 120
             GG   R  FG+P +    GRNR    S    RENT A ++RR R R  NSVLP WYPR
Sbjct: 61  TRGGGFGRGIFGTPRTVNRRGRNRPGSSSAA--RENTPAGTARRGRGRVTNSVLPSWYPR 120

Query: 121 TPLRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEYSVSVAGDHQEPSISLVTP 180
           TPLRDITA+V AIER RARLR +EG   + +P   D   L+  VSV+    E  I + +P
Sbjct: 121 TPLRDITAIVTAIERRRARLRGDEGLQVE-TPIYQDPGVLDPPVSVSPAPLEQDIPIASP 180

Query: 181 K---------PTVGKVPKIILGIANQNVVGAETLTPQKKLLNSIDKVEKVVMEELQKLKK 240
                     P+VGKVPKI+LGI NQ    +E LTPQKKLLN+ID VEK V EELQKLK+
Sbjct: 181 STAVRKKGCPPSVGKVPKILLGITNQTTGESECLTPQKKLLNNIDTVEKAVKEELQKLKR 240

Query: 241 TPSAKKAEREKRVRTLMSFR 250
           TPSAKKAEREKRVRTLMS R
Sbjct: 241 TPSAKKAEREKRVRTLMSMR 257

The following BLAST results are available for this feature:

BLAST of Cla000743 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PYM_ARATH	1.0e-56	50.57	Protein POLYCHOME OS=Arabidopsis thaliana GN=PYM PE=1 SV=1	[more]
GIG1_ARATH	4.4e-39	43.61	Protein GIGAS CELL1 OS=Arabidopsis thaliana GN=GIG1 PE=1 SV=1	[more]

BLAST of Cla000743 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KY99_CUCSA	3.8e-122	90.76	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G152290 PE=4 SV=1	[more]
F6HL68_VITVI	1.2e-56	55.06	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g07790 PE=4 SV=...	[more]
D7LI35_ARALL	1.3e-53	49.62	Polychome, UV-B-insensitive 4 OS=Arabidopsis lyrata subsp. lyrata GN=UVI4 PE=4 S...	[more]
V4LQQ2_EUTSA	6.4e-53	49.62	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10017150mg PE=4 SV=1	[more]
R0HDW2_9BRAS	1.1e-52	48.85	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10023892mg PE=4 SV=1	[more]

BLAST of Cla000743 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659121757\|ref\|XP_008460799.1\|	3.2e-122	90.76	PREDICTED: protein POLYCHOME [Cucumis melo]	[more]
gi\|449464890\|ref\|XP_004150162.1\|	5.5e-122	90.76	PREDICTED: protein POLYCHOME [Cucumis sativus]	[more]
gi\|700198666\|gb\|KGN53824.1\|	5.5e-122	90.76	hypothetical protein Csa_4G152290 [Cucumis sativus]	[more]
gi\|225441692\|ref\|XP_002277253.1\|	1.8e-56	55.06	PREDICTED: protein POLYCHOME [Vitis vinifera]	[more]
gi\|1009106074\|ref\|XP_015868489.1\|	2.6e-55	53.85	PREDICTED: protein POLYCHOME-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0042023	DNA endoreduplication
biological_process	GO:0009960	endosperm development
biological_process	GO:0009561	megagametogenesis
biological_process	GO:1904667	negative regulation of ubiquitin protein ligase activity
biological_process	GO:1900426	positive regulation of defense response to bacterium
biological_process	GO:0010224	response to UV-B
biological_process	GO:0010091	trichome branching
biological_process	GO:0044699	single-organism process
biological_process	GO:0051783	regulation of nuclear division
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU54225	watermelon EST collection version 2.0	transcribed_cluster
WMU71365	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla000743	Cla000743.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU71365	WMU71365	transcribed_cluster
WMU54225	WMU54225	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 121..141 scor
None	No IPR available	PANTHER	PTHR35119	FAMILY NOT NAMED	coord: 1..33 score: 4.6E-48coord: 70..249 score: 4.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla000743	Cla97C04G068720	Watermelon (97103) v2	wmwmbB297
Cla000743	MELO3C023180	Melon (DHL92) v3.5.1	mewmB588
Cla000743	ClCG04G000340	Watermelon (Charleston Gray)	wcgwmB260
Cla000743	CmaCh07G013150	Cucurbita maxima (Rimu)	cmawmB828
Cla000743	CmaCh03G000790	Cucurbita maxima (Rimu)	cmawmB641
Cla000743	CmoCh03G000800	Cucurbita moschata (Rifu)	cmowmB634
Cla000743	CmoCh07G013590	Cucurbita moschata (Rifu)	cmowmB819
Cla000743	Lsi01G018920	Bottle gourd (USVL1VR-Ls)	lsiwmB153
Cla000743	Cp4.1LG10g11700	Cucurbita pepo (Zucchini)	cpewmB080
Cla000743	Cp4.1LG19g00650	Cucurbita pepo (Zucchini)	cpewmB489
Cla000743	Carg12737	Silver-seed gourd	carwmB0277
Cla000743	Carg22466	Silver-seed gourd	carwmB0185
Cla000743	Bhi03G002127	Wax gourd	wgowmB448

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla000743	Wax gourd	wgowmB454