WMU54225 (transcribed_cluster) Watermelon (97103) v1

NameWMU54225
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
Descriptionuv-b-insensitive 4
LocationChr4 : 3367696 .. 3368066 (+)
Sequence length372
The following sequences are available for this feature:

transcribed_cluster sequence

AGACTCTCACTCCCCAGAAGAAGCTCTTGAACTCCATAGACAAAGTGGAGAAAGTAGTAATGGAGGAATTGCAGAAATTGAAAAAAACTCCCAGTGCGAAGAAAGCAGAGAGGGAGAAAAGGGTTCGTACTTTAATGTCGTTTCGTTGATTCATTTCAACACGAACACATTCCCTGAATTCTTTTGGCAATCATCAGACTTAACTCAGCAACTTTAGGATGAATCATCTGCTGATGATTACTTTGGTAAAGAGCGCCCATTGATCAGAGGGAGGGAGAAGGAGAAGGAGAGATCCTCATCTTCTGATGAGATCTCATCTCTGGGGGAGGATTATGTGTTAGTTTGGTTTCCAAAATGAATCCTTTTCATTTT
BLAST of WMU54225 vs. TAIR10
Match: AT2G42260.1 (AT2G42260.1 uv-b-insensitive 4)

HSP 1 Score: 83.6 bits (205), Expect = 9.5e-17
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 3

Query: 6   LTPQKKLLNSIDKVEKVVMEELQKLKKTPSAKKAEREKRVRTLMSFR 65
           LTP+KKLLNSIDKVEKVVMEE+QK+K TPSAK+AEREKRVRTLMS R
Sbjct: 213 LTPEKKLLNSIDKVEKVVMEEIQKMKSTPSAKRAEREKRVRTLMSMR 259

Query: 66  125
           
Sbjct: 273 259

Query: 126 147
           
Sbjct: 333 259

BLAST of WMU54225 vs. TAIR10
Match: AT3G57860.1 (AT3G57860.1 UV-B-insensitive 4-like)

HSP 1 Score: 76.3 bits (186), Expect = 1.5e-14
Identity = 36/47 (76.60%), Postives = 40/47 (85.11%), Query Frame = 3

Query: 6   LTPQKKLLNSIDKVEKVVMEELQKLKKTPSAKKAEREKRVRTLMSFR 65
           +TP+KKLLNSIDKVEK+VM E+QKLK TP AK+ EREKRVRTLM+ R
Sbjct: 197 ITPEKKLLNSIDKVEKIVMAEIQKLKSTPQAKREEREKRVRTLMTMR 243

Query: 66  125
           
Sbjct: 257 243

Query: 126 147
           
Sbjct: 317 243

BLAST of WMU54225 vs. Swiss-Prot
Match: PYM_ARATH (Protein POLYCHOME OS=Arabidopsis thaliana GN=PYM PE=1 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.7e-15
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 3

Query: 6   LTPQKKLLNSIDKVEKVVMEELQKLKKTPSAKKAEREKRVRTLMSFR 65
           LTP+KKLLNSIDKVEKVVMEE+QK+K TPSAK+AEREKRVRTLMS R
Sbjct: 213 LTPEKKLLNSIDKVEKVVMEEIQKMKSTPSAKRAEREKRVRTLMSMR 259

Query: 66  125
           
Sbjct: 273 259

Query: 126 147
           
Sbjct: 333 259

BLAST of WMU54225 vs. Swiss-Prot
Match: GIG1_ARATH (Protein GIGAS CELL1 OS=Arabidopsis thaliana GN=GIG1 PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.7e-13
Identity = 36/47 (76.60%), Postives = 40/47 (85.11%), Query Frame = 3

Query: 6   LTPQKKLLNSIDKVEKVVMEELQKLKKTPSAKKAEREKRVRTLMSFR 65
           +TP+KKLLNSIDKVEK+VM E+QKLK TP AK+ EREKRVRTLM+ R
Sbjct: 197 ITPEKKLLNSIDKVEKIVMAEIQKLKSTPQAKREEREKRVRTLMTMR 243

Query: 66  125
           
Sbjct: 257 243

Query: 126 147
           
Sbjct: 317 243

BLAST of WMU54225 vs. NCBI nr
Match: gi|659121757|ref|XP_008460799.1| (PREDICTED: protein POLYCHOME [Cucumis melo])

HSP 1 Score: 86.7 bits (213), Expect = 3.2e-14
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 3

Query: 3   TLTPQKKLLNSIDKVEKVVMEELQKLKKTPSAKKAEREKRVRTLMSFR 62
           TLTPQKKLLNSIDKVEKVVMEELQKLK+TPSAKKAEREKRVRTLMSFR
Sbjct: 202 TLTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREKRVRTLMSFR 249

Query: 63  122
           
Sbjct: 262 249

Query: 123 147
           
Sbjct: 322 249

BLAST of WMU54225 vs. NCBI nr
Match: gi|449464890|ref|XP_004150162.1| (PREDICTED: protein POLYCHOME [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 1.2e-13
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 3

Query: 6   LTPQKKLLNSIDKVEKVVMEELQKLKKTPSAKKAEREKRVRTLMSFR 65
           LTPQKKLLNSIDKVEKVVMEELQKLK+TPSAKKAEREKRVRTLMSFR
Sbjct: 203 LTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREKRVRTLMSFR 249

Query: 66  125
           
Sbjct: 263 249

Query: 126 147
           
Sbjct: 323 249

BLAST of WMU54225 vs. NCBI nr
Match: gi|700198666|gb|KGN53824.1| (hypothetical protein Csa_4G152290 [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 1.2e-13
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 3

Query: 6   LTPQKKLLNSIDKVEKVVMEELQKLKKTPSAKKAEREKRVRTLMSFR 65
           LTPQKKLLNSIDKVEKVVMEELQKLK+TPSAKKAEREKRVRTLMSFR
Sbjct: 267 LTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREKRVRTLMSFR 313

Query: 66  125
           
Sbjct: 327 313

Query: 126 147
           
Sbjct: 387 313

BLAST of WMU54225 vs. NCBI nr
Match: gi|743869397|ref|XP_011033266.1| (PREDICTED: protein POLYCHOME isoform X2 [Populus euphratica])

HSP 1 Score: 80.5 bits (197), Expect = 2.3e-12
Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = 3

Query: 3   TLTPQKKLLNSIDKVEKVVMEELQKLKKTPSAKKAEREKRVRTLMSFR 62
           +LTPQKKLLNSID VEKVVMEELQKLK+TPSAKKAEREKRVRTLMS R
Sbjct: 198 SLTPQKKLLNSIDTVEKVVMEELQKLKRTPSAKKAEREKRVRTLMSMR 245

Query: 63  122
           
Sbjct: 258 245

Query: 123 147
           
Sbjct: 318 245

BLAST of WMU54225 vs. NCBI nr
Match: gi|743869389|ref|XP_011033264.1| (PREDICTED: protein POLYCHOME isoform X1 [Populus euphratica])

HSP 1 Score: 80.5 bits (197), Expect = 2.3e-12
Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = 3

Query: 3   TLTPQKKLLNSIDKVEKVVMEELQKLKKTPSAKKAEREKRVRTLMSFR 62
           +LTPQKKLLNSID VEKVVMEELQKLK+TPSAKKAEREKRVRTLMS R
Sbjct: 200 SLTPQKKLLNSIDTVEKVVMEELQKLKRTPSAKKAEREKRVRTLMSMR 247

Query: 63  122
           
Sbjct: 260 247

Query: 123 147
           
Sbjct: 320 247

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT2G42260.19.5e-1787.23 uv-b-insensitive 4[more]
AT3G57860.11.5e-1476.60 UV-B-insensitive 4-like[more]
Match NameE-valueIdentityDescription
PYM_ARATH1.7e-1587.23Protein POLYCHOME OS=Arabidopsis thaliana GN=PYM PE=1 SV=1[more]
GIG1_ARATH2.7e-1376.60Protein GIGAS CELL1 OS=Arabidopsis thaliana GN=GIG1 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
gi|659121757|ref|XP_008460799.1|3.2e-1497.92PREDICTED: protein POLYCHOME [Cucumis melo][more]
gi|449464890|ref|XP_004150162.1|1.2e-1397.87PREDICTED: protein POLYCHOME [Cucumis sativus][more]
gi|700198666|gb|KGN53824.1|1.2e-1397.87hypothetical protein Csa_4G152290 [Cucumis sativus][more]
gi|743869397|ref|XP_011033266.1|2.3e-1291.67PREDICTED: protein POLYCHOME isoform X2 [Populus euphratica][more]
gi|743869389|ref|XP_011033264.1|2.3e-1291.67PREDICTED: protein POLYCHOME isoform X1 [Populus euphratica][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla000743Cla000743gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S1_0098095S1_0098095EST