Carg22466-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22466-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	protein POLYCHOME
Location	Cucurbita_argyrosperma_scaffold_152 : 438971 .. 441489 (-)
Sequence length	690

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGAATCAAGAGATAGATTGGAGAGGCAAGTAGATCATGCCGAGGTATTTGCTCGTTGGAGATCGGAAGGTATATTGGATGAGAAAGAAATGAGTACTAATTTGTTAAGGACTCCGATTTCTCGCGCCACAACGACGACTACAGATCAACAAAGACCTACGAATCTGAGACGCAGTTTTGGTTCTCCCATTTCTGGTGGAATTGGGCGAAATAGATTTCTCTACAGATCTCCTGTGTTGAGCCGCGAGAATGCGGTGGCTGGGAGCTCCCGGCGGAGTAGATCTCGGGGGAGGAATAGTGTGTTACCGATTTGGTATCCAAGAACTCCTCTCCGCGACATAACTGCAGTTGTGAGGGTAAATGACTAATCCCGTTACTTTGTTTTTGTTCTGCTAAAATCTTTCAATATTTTGTTCTGTTCTGCGTATAATTTTGTGGATTACTTGGATGTAGTATCCAGTGAATTTGATTCATATGATATATGGAAAATTCACTCTCATTGTTATTGCATATGGTCTCTGGTATTATATTGTTCTCTGATACAGTATACTTGTTTGGAGTCATTCAAAATTGAATTTGCTTGATCTTCGGGAAAGATCCTTTTGATTTTCTGGTGTAGTTGTTATTCTTGTTTCTGTTTTTCAGTTGGTAGCATTAGGTTTGATTTGATTTGAATCGATTTTCGACTGAAAATGTTAATGCTATCTCTAATTCTTTTAGTGAATTCTTAGGTTGGATCACTTTCCTTTTTCTTTAAGTTAATTAATCAATAAATTTTCAGTGCTTTTAAGCTATGTTCTACCAACCTGTTTGTCTAAAAAGAAGATTCTTTTGGTTTTGTAACGTCCATGCCCAATGATTTCATATGAAACATCAACAGTCTGGATAATGAGATCCTGTCCACCATTAATTAAAGCTATCATAATGCTCCTTTTTTGGTATTAATTAATTATTTTTTTCTTTGATTCTAATTGTTTTTTAGGCTTCATTTTCACCTGTTTTTAGAACTACTTTTTGGTGGGCTCAAATATGCTTTGGCTGGTTACTAGTATGTGTTGACTTGATACCCAATGATCATTTTGGCCCTATGTGAAAGCTGTAATTTGGATGTAAAAAATACACATACACAAGCAATAATAGTTTAACATTCTGATTGAAATACATATTAACACTGATATTATCATTTCCTTGTGGGACGTTTATAATGCTTATTAAACATGTGTTTGATACTTGTGAATGGGCCAAAACCCTAATGGGCTTCCTTCATAAAATCGTGTGCTCGCTTCTGGGTGTTATTTCTATCGGAATTCGTAGCTCAATTTGTGTTCTCCAAGCAAATGATCTTAGTAATGTAGAAAAATAGATGCATGGTTTTTAAAAATGTATGCTTTTTGTGACCTCATTTTCCAGCAAATATCTTATCGAGGTATAAATGCATCGCACCTTCACTATGTCACGTGCTTGTGTTTGTGCATCATTCATCTAGAATCTTCCCATCTCTGTAAGTTGGTTCCCTGATATTTTTGCTGTCTATGGGGAATATTTCCCCATCTTTTCACGTCTTTCGGGATCTTTTCAGTCTTTCGGGATGTTAATGAGTAGCTACAATAGTTTAAGCTCACCACTAGTTGATATTATCTTTTTTGTGCTCTCTTCAAGATCATTCCCCTCAAGATTTTAAAACGCATCTACTAGGGAGCGGTTTCCACCTCTTATAAAGGAATATTTTGTTCCCTCTCCAACCAATGTGAATGGGATCTCACAATTCAGCCCCTTGTGGAACAACGTCCTTGTTGTCACATTGCGTGGTGTCTTTCTCTGATATCATTTATAACAACACAAGCTCACTGCCAATAGATATTATCTGCTTTGGCCTAGTACAAATGGTATCAAAGTTAGACATCAAGCGACGTGCTAGTGAGGACGTTGGGCCCCCAAAAGAGATGGATTATGAGATCCCATATTGGTTGGAGAGGGGGAAGGAACGAAGCATTTTTCATAAGAGTGAAGAAACCTCCCTCTAGTAAATGCGTTCTAAAATTGTGAGACTAACGACGATACGTAACAACCCAAGCTAACCATATCTATTAGTAATGGGTTCAATAGTGAATTGTCGCTCATGCTTTTATATATGTTCTTCAGATTCCCATTTTTATAGTTTTCAACTTATTTTGCTTTTAATCAGGCAATTGAAAGAACAAGAGCTCGCATGAAAGAAAACAAAGGCCCAGGAAGTGATATTAGTCCTGCTCCCTCGGACGAAAGAGTTTTAGAGGCAAGCATTTTTCTGGTCACCCCAAAGGCAACCATAGGCAAAGTGCCAAAGATTCTTCGTGGAATCACAAATCAAAACGTGGGAGGGGCAGAGACTCTGACTCCCCAGAATAAGCTTTTGAACTCCATAGACAAGGTGGAGAAAGTAGTAATGGAGGAGCTGCAGAAATTGAAAAGGACAAGCAGTGCGAAGAAAGCAGAGAGGGAGAAAAGAGTTCGCACTTTAATGTCATTTCGTTGA

mRNA sequence

ATGTCGGAATCAAGAGATAGATTGGAGAGGCAAGTAGATCATGCCGAGGTATTTGCTCGTTGGAGATCGGAAGGTATATTGGATGAGAAAGAAATGAGTACTAATTTGTTAAGGACTCCGATTTCTCGCGCCACAACGACGACTACAGATCAACAAAGACCTACGAATCTGAGACGCAGTTTTGGTTCTCCCATTTCTGGTGGAATTGGGCGAAATAGATTTCTCTACAGATCTCCTGTGTTGAGCCGCGAGAATGCGGTGGCTGGGAGCTCCCGGCGGAGTAGATCTCGGGGGAGGAATAGTGTGTTACCGATTTGGTATCCAAGAACTCCTCTCCGCGACATAACTGCAGTTGTGAGGGCAATTGAAAGAACAAGAGCTCGCATGAAAGAAAACAAAGGCCCAGGAAGTGATATTAGTCCTGCTCCCTCGGACGAAAGAGTTTTAGAGGCAAGCATTTTTCTGGTCACCCCAAAGGCAACCATAGGCAAAGTGCCAAAGATTCTTCGTGGAATCACAAATCAAAACGTGGGAGGGGCAGAGACTCTGACTCCCCAGAATAAGCTTTTGAACTCCATAGACAAGGTGGAGAAAGTAGTAATGGAGGAGCTGCAGAAATTGAAAAGGACAAGCAGTGCGAAGAAAGCAGAGAGGGAGAAAAGAGTTCGCACTTTAATGTCATTTCGTTGA

Coding sequence (CDS)

ATGTCGGAATCAAGAGATAGATTGGAGAGGCAAGTAGATCATGCCGAGGTATTTGCTCGTTGGAGATCGGAAGGTATATTGGATGAGAAAGAAATGAGTACTAATTTGTTAAGGACTCCGATTTCTCGCGCCACAACGACGACTACAGATCAACAAAGACCTACGAATCTGAGACGCAGTTTTGGTTCTCCCATTTCTGGTGGAATTGGGCGAAATAGATTTCTCTACAGATCTCCTGTGTTGAGCCGCGAGAATGCGGTGGCTGGGAGCTCCCGGCGGAGTAGATCTCGGGGGAGGAATAGTGTGTTACCGATTTGGTATCCAAGAACTCCTCTCCGCGACATAACTGCAGTTGTGAGGGCAATTGAAAGAACAAGAGCTCGCATGAAAGAAAACAAAGGCCCAGGAAGTGATATTAGTCCTGCTCCCTCGGACGAAAGAGTTTTAGAGGCAAGCATTTTTCTGGTCACCCCAAAGGCAACCATAGGCAAAGTGCCAAAGATTCTTCGTGGAATCACAAATCAAAACGTGGGAGGGGCAGAGACTCTGACTCCCCAGAATAAGCTTTTGAACTCCATAGACAAGGTGGAGAAAGTAGTAATGGAGGAGCTGCAGAAATTGAAAAGGACAAGCAGTGCGAAGAAAGCAGAGAGGGAGAAAAGAGTTCGCACTTTAATGTCATTTCGTTGA

Protein sequence

MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLRTPISRATTTTTDQQRPTNLRRSFGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTPLRDITAVVRAIERTRARMKENKGPGSDISPAPSDERVLEASIFLVTPKATIGKVPKILRGITNQNVGGAETLTPQNKLLNSIDKVEKVVMEELQKLKRTSSAKKAEREKRVRTLMSFR

Homology

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BLAST of Carg22466-RA vs. NCBI nr
Match: XP_022928675.1 (protein POLYCHOME-like [Cucurbita moschata])

HSP 1 Score: 406.8 bits (1044), Expect = 5.0e-110
Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 0


Query: 1   MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLRTPISRATTTTTDQQRPTNLRRS 60
           MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLRTPISRATTTTTDQQRPTNLRRS
Sbjct: 1   MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLRTPISRATTTTTDQQRPTNLRRS 60

Query: 61  FGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTPLRDITAVVR 120
           FGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTPLRDITAVVR
Sbjct: 61  FGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTPLRDITAVVR 120

Query: 121 AIERTRARMKENKGPGSDISPAPSDERVLEASIFLVTPKATIGKVPKILRGITNQNVGGA 180
           AIERTRARMKENKGPGSDISPAPSDERVLEASIFLVTPKATIGKVPKILRGITNQNVGGA
Sbjct: 121 AIERTRARMKENKGPGSDISPAPSDERVLEASIFLVTPKATIGKVPKILRGITNQNVGGA 180

Query: 181 ETLTPQNKLLNSIDKVEKVVMEXXXXXXXXXXXXXXXREKRVRTLMSFR 230
           ETLTPQNKLLNSIDKVEKVVMEXXXXXXXXXXXXXXXREKRVRTLMSFR
Sbjct: 181 ETLTPQNKLLNSIDKVEKVVMEXXXXXXXXXXXXXXXREKRVRTLMSFR 229

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BLAST of Carg22466-RA vs. NCBI nr
Match: XP_023543597.1 (protein POLYCHOME-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 399.1 bits (1024), Expect = 1.0e-107
Identity = 226/229 (98.69%), Postives = 226/229 (98.69%), Query Frame = 0


Query: 1   MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLRTPISRATTTTTDQQRPTNLRRS 60
           MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLL TPISRATTTTT QQRPTNLRRS
Sbjct: 1   MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLGTPISRATTTTTVQQRPTNLRRS 60

Query: 61  FGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTPLRDITAVVR 120
           FGSPISGGIGRNRFLYRSPV SRENAVAGSSRRSRSRGRNSVLPIWYPRTPLRDITAVVR
Sbjct: 61  FGSPISGGIGRNRFLYRSPVFSRENAVAGSSRRSRSRGRNSVLPIWYPRTPLRDITAVVR 120

Query: 121 AIERTRARMKENKGPGSDISPAPSDERVLEASIFLVTPKATIGKVPKILRGITNQNVGGA 180
           AIERTRARMKENKGPGSDISPAPSDERVLEASIFLVTPKATIGKVPKILRGITNQNVGGA
Sbjct: 121 AIERTRARMKENKGPGSDISPAPSDERVLEASIFLVTPKATIGKVPKILRGITNQNVGGA 180

Query: 181 ETLTPQNKLLNSIDKVEKVVMEXXXXXXXXXXXXXXXREKRVRTLMSFR 230
           ETLTPQNKLLNSIDKVEKVVMEXXXXXXXXXXXXXXXREKRVRTLMSFR
Sbjct: 181 ETLTPQNKLLNSIDKVEKVVMEXXXXXXXXXXXXXXXREKRVRTLMSFR 229

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BLAST of Carg22466-RA vs. NCBI nr
Match: XP_022967896.1 (protein POLYCHOME-like [Cucurbita maxima])

HSP 1 Score: 394.8 bits (1013), Expect = 2.0e-106
Identity = 224/229 (97.82%), Postives = 224/229 (97.82%), Query Frame = 0


Query: 1   MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLRTPISRATTTTTDQQRPTNLRRS 60
           MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLL TPISRATTTTT QQRPTNLRRS
Sbjct: 1   MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLGTPISRATTTTTAQQRPTNLRRS 60

Query: 61  FGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTPLRDITAVVR 120
           FGSPISGGIGRNRFLYRSP LSRENAVAG SRRSRSRGRNSVLPIWYPRTPLRDITAVVR
Sbjct: 61  FGSPISGGIGRNRFLYRSPALSRENAVAGISRRSRSRGRNSVLPIWYPRTPLRDITAVVR 120

Query: 121 AIERTRARMKENKGPGSDISPAPSDERVLEASIFLVTPKATIGKVPKILRGITNQNVGGA 180
           AIERTRARMKENKGPGSDISPAPSDERVLEASIFLVTPKATIGKVPKILRGITNQNVGGA
Sbjct: 121 AIERTRARMKENKGPGSDISPAPSDERVLEASIFLVTPKATIGKVPKILRGITNQNVGGA 180

Query: 181 ETLTPQNKLLNSIDKVEKVVMEXXXXXXXXXXXXXXXREKRVRTLMSFR 230
           E LTPQNKLLNSIDKVEKVVMEXXXXXXXXXXXXXXXREKRVRTLMSFR
Sbjct: 181 EILTPQNKLLNSIDKVEKVVMEXXXXXXXXXXXXXXXREKRVRTLMSFR 229

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BLAST of Carg22466-RA vs. NCBI nr
Match: XP_004150162.1 (PREDICTED: protein POLYCHOME [Cucumis sativus])

HSP 1 Score: 292.4 bits (747), Expect = 1.4e-75
Identity = 168/249 (67.47%), Postives = 179/249 (71.89%), Query Frame = 0


Query: 1   MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLRTPISRATTTTTDQQRP------ 60
           MSE+RDRLERQVD+AEVFAR RSEGILDE+EM +NL+ TPI+RATTT T QQRP      
Sbjct: 1   MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRPTNPGPG 60

Query: 61  ---TNLRRSFGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTP 120
              TNLRR+FGSPISGGIGRNRFLYR+PVLSREN  AGSSRRSRSRGRNSVLPIWYPRTP
Sbjct: 61  GGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 120

Query: 121 LRDITAVVRAIERTRARMKENKGPGSDISPAPSDERVLEAS-----------IFLVTPKA 180
           LRDITAVVRAIERT                   DER LE S           I L+TPK 
Sbjct: 121 LRDITAVVRAIERTXXXXXXXXXXXXXXXXXXXDERALEYSVSVASDHQEPIISLLTPKP 180

Query: 181 TIGKVPKILRGITNQNVGGAETLTPQNKLLNSIDKVEKVVMEXXXXXXXXXXXXXXXREK 230
           T+GKVPKILRGI N+N  GAE LTPQ KLLNSIDKVEKVVME               REK
Sbjct: 181 TVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 240

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BLAST of Carg22466-RA vs. NCBI nr
Match: KGN53824.1 (hypothetical protein Csa_4G152290 [Cucumis sativus])

HSP 1 Score: 292.4 bits (747), Expect = 1.4e-75
Identity = 168/249 (67.47%), Postives = 179/249 (71.89%), Query Frame = 0


Query: 1   MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLRTPISRATTTTTDQQRP------ 60
           MSE+RDRLERQVD+AEVFAR RSEGILDE+EM +NL+ TPI+RATTT T QQRP      
Sbjct: 65  MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRPTNPGPG 124

Query: 61  ---TNLRRSFGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTP 120
              TNLRR+FGSPISGGIGRNRFLYR+PVLSREN  AGSSRRSRSRGRNSVLPIWYPRTP
Sbjct: 125 GGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 184

Query: 121 LRDITAVVRAIERTRARMKENKGPGSDISPAPSDERVLEAS-----------IFLVTPKA 180
           LRDITAVVRAIERT                   DER LE S           I L+TPK 
Sbjct: 185 LRDITAVVRAIERTXXXXXXXXXXXXXXXXXXXDERALEYSVSVASDHQEPIISLLTPKP 244

Query: 181 TIGKVPKILRGITNQNVGGAETLTPQNKLLNSIDKVEKVVMEXXXXXXXXXXXXXXXREK 230
           T+GKVPKILRGI N+N  GAE LTPQ KLLNSIDKVEKVVME               REK
Sbjct: 245 TVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 304

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BLAST of Carg22466-RA vs. TAIR10
Match: AT2G42260.1 (uv-b-insensitive 4)

HSP 1 Score: 165.6 bits (418), Expect = 3.5e-41
Identity = 119/262 (45.42%), Postives = 143/262 (54.58%), Query Frame = 0


Query: 1   MSESRDRLERQVDHAEVFARWRSEGI-LDEKEMSTNLLRTPISRATTTTTD--------- 60
           M E+RDR+ERQVD+   F   RS GI LDE     NL  +P+ R  +  T          
Sbjct: 1   MPEARDRIERQVDYPAAFLNRRSHGILLDEPATQHNLFGSPVQRVPSEATGGLGSIGQGS 60

Query: 61  -QQRPTNLRRSFGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPR 120
              R   +R +FG   +GG  R +  +RSP   REN   G +RR R+R  NSVLP WYPR
Sbjct: 61  MTGRGGLVRGNFGIRRTGGGRRGQIQFRSP-QGRENMSLGVTRRGRARASNSVLPSWYPR 120

Query: 121 TPLRDITAVVRAIERTRARMKENKGPGSDI-SPAPSDERVLEASI-----------FLVT 180
           TPLRDI+AVVRAIER RARM E  G G DI +P P    VL++ +            +VT
Sbjct: 121 TPLRDISAVVRAIERRRARMGE--GVGRDIETPTPQQLGVLDSLVPLSGAHLEHDYSMVT 180

Query: 181 PKATIG----------KVPKILRGITNQNVGGAETLTPQNKLLNSIDKVEKVVMEXXXXX 230
           P  +IG          KV +IL  IT +N G  + LTP+ KLLNSIDKVEKVVME     
Sbjct: 181 PGPSIGFKRPWPPSTAKVHQILLDITRENTGEEDALTPEKKLLNSIDKVEKVVMEEIQKM 240

[Close]

BLAST of Carg22466-RA vs. TAIR10
Match: AT3G57860.1 (UV-B-insensitive 4-like)

HSP 1 Score: 107.1 bits (266), Expect = 1.5e-23
Identity = 95/254 (37.40%), Postives = 123/254 (48.43%), Query Frame = 0


Query: 1   MSESRDRLERQVDHAEVFARWRSEGI-LDEKEMSTNLLRTPISRATTTTTDQQRPTNLRR 60
           M E+RDR ER VD++ +FA  R  GI LDE +   +L+ +P++    +            
Sbjct: 1   MPEARDRTERPVDYSTIFANRRRHGILLDEPDSRLSLIESPVNPDIGSIGGTGGLVRGNF 60

Query: 61  SFGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTPLRDITAVV 120
           +   P +G  G   F  R P   REN    ++RR R  G   +LP WYPRTPLRDIT +V
Sbjct: 61  TTWRPGNGRGGHTPF--RLP-QGRENMPIVTARRGRGGG---LLPSWYPRTPLRDITHIV 120

Query: 121 RAIERTRARMKENKGPGSDIS-----PAPSDERVLEASI--------FLVTPKATIG--- 180
           RAIER R       G G D       P      VLE+ +         +VTP  ++G   
Sbjct: 121 RAIERRR-----GAGTGGDDGRVIEIPTHRQVGVLESPVPLSGEHKCSMVTPGPSVGFKR 180

Query: 181 -------KVPKILRGITNQNV-GGAETLTPQNKLLNSIDKVEKVVMEXXXXXXXXXXXXX 230
                  KV K+L  IT +     A  +TP+ KLLNSIDKVEK+VM              
Sbjct: 181 SCPPSTAKVQKMLLDITKEIAEEEAGFITPEKKLLNSIDKVEKIVMAEIQKLKSTPQAKR 240

[Close]

BLAST of Carg22466-RA vs. Swiss-Prot
Match: sp|O48533|PYM_ARATH (Protein POLYCHOME OS=Arabidopsis thaliana OX=3702 GN=PYM PE=1 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 6.4e-40
Identity = 119/262 (45.42%), Postives = 143/262 (54.58%), Query Frame = 0


Query: 1   MSESRDRLERQVDHAEVFARWRSEGI-LDEKEMSTNLLRTPISRATTTTTD--------- 60
           M E+RDR+ERQVD+   F   RS GI LDE     NL  +P+ R  +  T          
Sbjct: 1   MPEARDRIERQVDYPAAFLNRRSHGILLDEPATQHNLFGSPVQRVPSEATGGLGSIGQGS 60

Query: 61  -QQRPTNLRRSFGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPR 120
              R   +R +FG   +GG  R +  +RSP   REN   G +RR R+R  NSVLP WYPR
Sbjct: 61  MTGRGGLVRGNFGIRRTGGGRRGQIQFRSP-QGRENMSLGVTRRGRARASNSVLPSWYPR 120

Query: 121 TPLRDITAVVRAIERTRARMKENKGPGSDI-SPAPSDERVLEASI-----------FLVT 180
           TPLRDI+AVVRAIER RARM E  G G DI +P P    VL++ +            +VT
Sbjct: 121 TPLRDISAVVRAIERRRARMGE--GVGRDIETPTPQQLGVLDSLVPLSGAHLEHDYSMVT 180

Query: 181 PKATIG----------KVPKILRGITNQNVGGAETLTPQNKLLNSIDKVEKVVMEXXXXX 230
           P  +IG          KV +IL  IT +N G  + LTP+ KLLNSIDKVEKVVME     
Sbjct: 181 PGPSIGFKRPWPPSTAKVHQILLDITRENTGEEDALTPEKKLLNSIDKVEKVVMEEIQKM 240

[Close]

BLAST of Carg22466-RA vs. Swiss-Prot
Match: sp|Q9M2R1|GIG1_ARATH (Protein GIGAS CELL1 OS=Arabidopsis thaliana OX=3702 GN=GIG1 PE=1 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.7e-22
Identity = 95/254 (37.40%), Postives = 123/254 (48.43%), Query Frame = 0


Query: 1   MSESRDRLERQVDHAEVFARWRSEGI-LDEKEMSTNLLRTPISRATTTTTDQQRPTNLRR 60
           M E+RDR ER VD++ +FA  R  GI LDE +   +L+ +P++    +            
Sbjct: 1   MPEARDRTERPVDYSTIFANRRRHGILLDEPDSRLSLIESPVNPDIGSIGGTGGLVRGNF 60

Query: 61  SFGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTPLRDITAVV 120
           +   P +G  G   F  R P   REN    ++RR R  G   +LP WYPRTPLRDIT +V
Sbjct: 61  TTWRPGNGRGGHTPF--RLP-QGRENMPIVTARRGRGGG---LLPSWYPRTPLRDITHIV 120

Query: 121 RAIERTRARMKENKGPGSDIS-----PAPSDERVLEASI--------FLVTPKATIG--- 180
           RAIER R       G G D       P      VLE+ +         +VTP  ++G   
Sbjct: 121 RAIERRR-----GAGTGGDDGRVIEIPTHRQVGVLESPVPLSGEHKCSMVTPGPSVGFKR 180

Query: 181 -------KVPKILRGITNQNV-GGAETLTPQNKLLNSIDKVEKVVMEXXXXXXXXXXXXX 230
                  KV K+L  IT +     A  +TP+ KLLNSIDKVEK+VM              
Sbjct: 181 SCPPSTAKVQKMLLDITKEIAEEEAGFITPEKKLLNSIDKVEKIVMAEIQKLKSTPQAKR 240

[Close]

BLAST of Carg22466-RA vs. TrEMBL
Match: tr|A0A0A0KY99|A0A0A0KY99_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G152290 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 9.1e-76
Identity = 168/249 (67.47%), Postives = 179/249 (71.89%), Query Frame = 0


Query: 1   MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLRTPISRATTTTTDQQRP------ 60
           MSE+RDRLERQVD+AEVFAR RSEGILDE+EM +NL+ TPI+RATTT T QQRP      
Sbjct: 65  MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRPTNPGPG 124

Query: 61  ---TNLRRSFGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTP 120
              TNLRR+FGSPISGGIGRNRFLYR+PVLSREN  AGSSRRSRSRGRNSVLPIWYPRTP
Sbjct: 125 GGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 184

Query: 121 LRDITAVVRAIERTRARMKENKGPGSDISPAPSDERVLEAS-----------IFLVTPKA 180
           LRDITAVVRAIERT                   DER LE S           I L+TPK 
Sbjct: 185 LRDITAVVRAIERTXXXXXXXXXXXXXXXXXXXDERALEYSVSVASDHQEPIISLLTPKP 244

Query: 181 TIGKVPKILRGITNQNVGGAETLTPQNKLLNSIDKVEKVVMEXXXXXXXXXXXXXXXREK 230
           T+GKVPKILRGI N+N  GAE LTPQ KLLNSIDKVEKVVME               REK
Sbjct: 245 TVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 304

[Close]

BLAST of Carg22466-RA vs. TrEMBL
Match: tr|A0A1S3CDA1|A0A1S3CDA1_CUCME (protein POLYCHOME OS=Cucumis melo OX=3656 GN=LOC103499559 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 8.8e-71
Identity = 161/249 (64.66%), Postives = 172/249 (69.08%), Query Frame = 0


Query: 1   MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLRTPISRAT---------TTTTDQ 60
           MSE+RDRLERQVD+AEVFAR RSEGILDE+EM +NL+ TPI+RAT               
Sbjct: 1   MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATXXXXXXXXXXXXXXX 60

Query: 61  QRPTNLRRSFGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTP 120
               NLRR+FGSPISGGIGRNRFLYR+PVLSREN  AGSSRRSRSRGRNSVLPIWYPRTP
Sbjct: 61  XXXANLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 120

Query: 121 LRDITAVVRAIERTRARMKENKGPGSDISPAPSDERVLEAS-----------IFLVTPKA 180
           LRDITAVVRAIERT                   DER LE S           I L+TPK 
Sbjct: 121 LRDITAVVRAIERTXXXXXXXXXXXXXXXXXXXDERALEYSVSVASDHQEPIISLLTPKP 180

Query: 181 TIGKVPKILRGITNQNVGGAETLTPQNKLLNSIDKVEKVVMEXXXXXXXXXXXXXXXREK 230
           T+GKVPKILRGI N+N  GAETLTPQ KLLNSIDKVEKVVME               REK
Sbjct: 181 TVGKVPKILRGIANENTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 240

[Close]

BLAST of Carg22466-RA vs. TrEMBL
Match: tr|A0A2P4HWJ9|A0A2P4HWJ9_QUESU (Protein polychome OS=Quercus suber OX=58331 GN=CFP56_75328 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.9e-41
Identity = 121/254 (47.64%), Postives = 148/254 (58.27%), Query Frame = 0


Query: 1   MSESRDRLERQVDHAEVFARWRSEG---ILDEKEMSTNLLRTPIS-RATTTTTDQQRPTN 60
           M ESRDRL R VDHA +FAR R+ G   ++D+ E+  NL  +P   R   T   +     
Sbjct: 1   MPESRDRLVRPVDHAAIFARRRTPGTGILIDDPEVGPNLFGSPAPVRQVATPATRGLFIR 60

Query: 61  LRRSFGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRS-RSRGRNSVLPIWYPRTPLRDI 120
            R  FG+P      R R LYR+P   +EN    + R S R R R+SVLP WYPRTPLRDI
Sbjct: 61  GRGGFGTPRH---VRGRNLYRTPASGQENNPRTAQRSSGRGRPRSSVLPSWYPRTPLRDI 120

Query: 121 TAVVRAIERTRARMKENKGPGSDISPAPSDERVLEAS-----------IFLVTPK----- 180
           TAVVRAIERTRAR+++ +G   + +P P  +RVL+ S           I +V+P      
Sbjct: 121 TAVVRAIERTRARLRDVEGQQIE-TPVPEGQRVLDPSVTQSSAQLKHNISMVSPSLAVGV 180

Query: 181 ----ATIGKVPKILRGITNQNVGGAETLTPQNKLLNSIDKVEKVVMEXXXXXXXXXXXXX 230
                 +GKVPKIL GITNQN G +E+LTPQ KLLNSID VEKVVME             
Sbjct: 181 KPRTPAVGKVPKILLGITNQNAGESESLTPQKKLLNSIDTVEKVVMEELQKLKRSPSAKK 240

[Close]

BLAST of Carg22466-RA vs. TrEMBL
Match: tr|F6HL68|F6HL68_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_08s0007g07790 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.5e-41
Identity = 129/267 (48.31%), Postives = 148/267 (55.43%), Query Frame = 0


Query: 1   MSESRDRLERQVDHAEVFARWRSE--GIL-DEKEMSTNLLRTPISRAT---TTTTDQQRP 60
           M ESRDRL R  D AE+F R RS   GIL D  E S+NL  +P  R T   TTT   +  
Sbjct: 1   MPESRDRLSRPEDIAELFLRRRSGILGILADGSERSSNLFASPSRRETTTRTTTLGARGA 60

Query: 61  TNL---------RRSFGSP-ISGGIGRNRFLYRSPVLSRENAVA-GSSRRSRSRGRNSVL 120
           T +         R  FG+P I  G GR R +YRSP+  REN  A GS RR R R  NSVL
Sbjct: 61  TGILASRGGGVGRGGFGTPRIGTGRGRGRAVYRSPLFGRENTPATGSGRRGRGRSGNSVL 120

Query: 121 PIWYPRTPLRDITAVVRAIERTRARMKENKGPGSDISPAPSD------------ERVLEA 180
           P WYPRTPLRDIT VVRAIER RAR++E  G   DI P P D               LE 
Sbjct: 121 PSWYPRTPLRDITHVVRAIERRRARLREIDGQQIDI-PIPQDISDVHDPILPPSSAQLEQ 180

Query: 181 SIFLVTPKAT---------IGKVPKILRGITNQNVGGAETLTPQNKLLNSIDKVEKVVME 230
            I +++P  T         +GKVPKIL  IT+Q  GG++ LTPQ KLLNSID VEK VM+
Sbjct: 181 DISMISPSPTSGMKLVPKAVGKVPKILLDITDQTGGGSDFLTPQKKLLNSIDTVEKAVMD 240

[Close]

BLAST of Carg22466-RA vs. TrEMBL
Match: tr|A0A2N9HHY2|A0A2N9HHY2_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39407 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.6e-40
Identity = 127/260 (48.85%), Postives = 152/260 (58.46%), Query Frame = 0


Query: 1   MSESRDRLERQVDHAEVFARWRSEGI---LDEKEMSTNLLRTPISR---ATTTTTDQQRP 60
           M ESRDRL R +D+A VF+  RS GI   LD+ EM +NL  +P+     AT TT   +  
Sbjct: 1   MPESRDRLSRPLDYAAVFSHRRSAGIGVLLDDPEMGSNLFGSPLPARRVATVTTPATRGR 60

Query: 61  TNLR--RSFGSPISGGIGRNRFLYRSPVLSRENAVAGSS-RRSRSRGR--NSVLPIWYPR 120
           T LR  R  G+P S    R R LY SP   REN  + S+ RR+  RGR  +SVLP WYPR
Sbjct: 61  TGLRLTRGRGTPRS---MRGRNLYGSPDFGRENTPSTSTGRRNSVRGRPGSSVLPSWYPR 120

Query: 121 TPLRDITAVVRAIERTRARMKENKGPGSDISPAPSDERVLEAS-----------IFLVTP 180
            PLRDITAVVRAIER RAR+ + +G   + SP P  +RVL+ S           I +++P
Sbjct: 121 APLRDITAVVRAIERRRARLGDVEGQPIE-SPIPEGQRVLDPSVTPSGAQLKHNISMISP 180

Query: 181 KA---------TIGKVPKILRGITNQNVGGAETLTPQNKLLNSIDKVEKVVMEXXXXXXX 230
                       +GKVPKIL GIT+QN G +E LTPQ KLLNSID VEKVVME       
Sbjct: 181 NTAVGVKPCTPAVGKVPKILLGITDQNAGESEFLTPQKKLLNSIDTVEKVVMEELQKLKR 240

The following BLAST results are available for this feature:

BLAST of Carg22466-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022928675.1	5.0e-110	100.00	protein POLYCHOME-like [Cucurbita moschata]	[more]
XP_023543597.1	1.0e-107	98.69	protein POLYCHOME-like [Cucurbita pepo subsp. pepo]	[more]
XP_022967896.1	2.0e-106	97.82	protein POLYCHOME-like [Cucurbita maxima]	[more]
XP_004150162.1	1.4e-75	67.47	PREDICTED: protein POLYCHOME [Cucumis sativus]	[more]
KGN53824.1	1.4e-75	67.47	hypothetical protein Csa_4G152290 [Cucumis sativus]	[more]

BLAST of Carg22466-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT2G42260.1	3.5e-41	45.42	uv-b-insensitive 4	[more]
AT3G57860.1	1.5e-23	37.40	UV-B-insensitive 4-like	[more]

BLAST of Carg22466-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O48533\|PYM_ARATH	6.4e-40	45.42	Protein POLYCHOME OS=Arabidopsis thaliana OX=3702 GN=PYM PE=1 SV=1	[more]
sp\|Q9M2R1\|GIG1_ARATH	2.7e-22	37.40	Protein GIGAS CELL1 OS=Arabidopsis thaliana OX=3702 GN=GIG1 PE=1 SV=1	[more]

BLAST of Carg22466-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KY99\|A0A0A0KY99_CUCSA	9.1e-76	67.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G152290 PE=4 SV=1	[more]
tr\|A0A1S3CDA1\|A0A1S3CDA1_CUCME	8.8e-71	64.66	protein POLYCHOME OS=Cucumis melo OX=3656 GN=LOC103499559 PE=4 SV=1	[more]
tr\|A0A2P4HWJ9\|A0A2P4HWJ9_QUESU	1.9e-41	47.64	Protein polychome OS=Quercus suber OX=58331 GN=CFP56_75328 PE=4 SV=1	[more]
tr\|F6HL68\|F6HL68_VITVI	2.5e-41	48.31	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_08s0007g07790 PE=4 SV=...	[more]
tr\|A0A2N9HHY2\|A0A2N9HHY2_FAGSY	1.6e-40	48.85	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39407 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0051783	regulation of nuclear division
GO:1904667	negative regulation of ubiquitin protein ligase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR034590	POLYCHOME/GIG1

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1904667	negative regulation of ubiquitin protein ligase activity
biological_process	GO:0051783	regulation of nuclear division
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg22466	Carg22466	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg22466-RA.CDS.2	Carg22466-RA.CDS.2	CDS
Carg22466-RA.CDS.1	Carg22466-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg22466-RA.exon.2	Carg22466-RA.exon.2	exon
Carg22466-RA.exon.1	Carg22466-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg22466-RA	Carg22466-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR034590	POLYCHOME/GIGAS CELL1	PANTHER	PTHR35119	FAMILY NOT NAMED	coord: 1..229
None	No IPR available	PANTHER	PTHR35119:SF1	PROTEIN GIGAS CELL1-RELATED	coord: 1..229