Cucsa.152690 (gene) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GACGTTCTAAAACTAGAAAATTAGGAAGGTATAAGGAAAAGAAGGAACCCTAATTCATCTGCTTTTTCTCCGACTCACGTTCAACCGCCCAGCCCCTTCCTTGTCTCCGGTAGCATCTCGATGACAGTCCTTTGAGATAAACGGCGGATCGTACTCTCACTCACTCAGTTTCTGGAACTGATTTGCTGATTAAAAGGAGCGATATGTGTATTATTTGCGGAATCATCTTCTGAACAATTCATCCTAGGGATAAGGTTGAAGATGGATATAATTTCCCAATTGCAGGAACAAGTTAACACAATTGCTGCTTTAGCTTTCAACACATTTGGGACATTGCAAAGAGATGCTCCTCCAGTTCGTTTATCCCCTAATTATCCCGAACCACCGTCTCAGGAGCCTACAGAGGATAATGCAACCATCGCAGAGCAGCCCAAGCTTATGAGTGCCGCTTTGGTGAAAGCTGCTAAGCAGGTGCGTATCATTTATTCTGCACTTTAATACTTCGGGGTGGAAAATATGAATGAGTTAGAGTACCTCTTGTTAATAAACTTTCCACGCATTGAAACATCAAGAAAAATATTTGCATTTTCCATTTGAGGAAATTCAGTGTCCTAGATTAACTTTACATGCATTCTGTCTAGTGTCTACTGGGTAAGTAGCCGAGAATGCAGTATCTACTTGAAGCACCCTTGTGTTGAGGTTGGAAGAGAAAGAAAAATCAAGGCAGCAGGTTTCATGCTACTTGTTTGAGATGAGTACATATTCTAATGCTATGATATATGATACAATCCACAAATTTGGTATTGAAAACTTCAGTCTATTTTTCCCATCTAACATCAAATACTACTGAGGTAGGTATGGCTATTCGATCGGCAATAAAaCAAaGTACTATGGTTCTTTTTTTtAGTTATCCTTTtACTTTTtAACTGCTTGTTATGTATATTTAGGCCCACTTTAAGGTGTTCTTTAAGTGTTGATATTTTGGAATCTGATACTCAAACCCTGTATTTGAGCAATTTTGCTGAGAGAGTTTTGATTTTCACAAGTTTCCATCGTCGAACTCAGCAATGCATTTAGGTTTGTTCTTCCGAATAATCTTTTAAGGATTATATAGAATTATAAAATAGACTGATTCTGTCCACGTTAAGTTTGAAAATCTCAGTGTGATAGTATTAAGTAATAGAAACGTACAAAGTTTTCCAACTCTGCTGGACTTTTAATGACTTCTAGATGTGATTCTACAACGAGTTAGATTTGTTCTATATATTCTCTCATTTTCTGTATTTTTTACGTTTACCTCTTGATTGGTATGTTATTTTATTAGTTTTTTGAGGAGTTGCAAGGAGCCAACTGAGGAATTTCTCCTCCATCCACTTTTCTCTCTCGGAGAAATGGCTGTTTTCATAGTAGGTTGGAGTATATGCTAATTTGTGGGGTTTGGGGTGCGAGAGAAATGATAGAATCTTCAAGGGAGAAATAACCGAATCTTGGATCTTGAAGATTCGTTTTTAATAATTAATCGCTTAGTCACATTTCACTTGATTGGAGCCCTTCCCCTTCTTATAGTTAGCTACACTTTCTGTGAACACCATTCTGTATGGTTATGTATTCTTTCACCTTGTTTTTCAACAAAAGTCTAGTTGTACATCAAAAACAAAATTTATCAGCATTTTGAACAAAAGAAAGGGATGGGATCTTGCTTCATTTATTTGCAATTATCCAATTGAACATGTGTACCTTTTCTTAAAAAAaTTATTGTCAATATTTTCTAGCACAGTTTGATGCATTGGTTGCAGCATTGCCTCTATCTGATGGAGGTGAAGAAGAGCAGTTGAAAAGGATTGCAGAACTACAGGTATGAATTCTCATATTCTGATGTTGATATAAGATCAAGAGTTGTTGTGTTGTTTACTTCTCTCAGTATGTATTTCAGGCTGAGAACGATGTTGTAGGTCAAGAACTTCAAAAACAGCTACAAGCAGCAGGTGTTATCTCTGTCTTCTTGTTAATCTCTACATTTTCAAACCGTGCCCCGGTGTGGTTACATAAGACTGATGTTGTTTGGCTGGCGACTTACTTTAGTTGAAATAATTCTATTTAATAATTTTAGCC GACGTTCTAAAACTAGAAAATTAGGAAGGTATAAGGAAAAGAAGGAACCCTAATTCATCTGCTTTTTCTCCGACTCACGTTCAACCGCCCAGCCCCTTCCTTGTCTCCGGTAGCATCTCGATGACAGTCCTTTGAGATAAACGGCGGATCGTACTCTCACTCACTCAGTTTCTGGAACTGATTTGCTGATTAAAAGGAGCGATATGTGTATTATTTGCGGAATCATCTTCTGAACAATTCATCCTAGGGATAAGGTTGAAGATGGATATAATTTCCCAATTGCAGGAACAAGTTAACACAATTGCTGCTTTAGCTTTCAACACATTTGGGACATTGCAAAGAGATGCTCCTCCAGTTCGTTTATCCCCTAATTATCCCGAACCACCGTCTCAGGAGCCTACAGAGGATAATGCAACCATCGCAGAGCAGCCCAAGCTTATGAGTGCCGCTTTGGTGAAAGCTGCTAAGCAGTTTGATGCATTGGTTGCAGCATTGCCTCTATCTGATGGAGGTGAAGAAGAGCAGTTGAAAAGGATTGCAGAACTACAGGCTGAGAACGATGTTGTAGGTCAAGAACTTCAAAAACAGCTACAAGCAGCAGGTGTTATCTCTGTCTTCTTGTTAATCTCTACATTTTCAAACCGTGCCCCGGTGTGGTTACATAAGACTGATGTTGTTTGGCTGGCGACTTACTTTAGTTGAAATAATTCTATTTAATAATTTTAGCC ATGGATATAATTTCCCAATTGCAGGAACAAGTTAACACAATTGCTGCTTTAGCTTTCAACACATTTGGGACATTGCAAAGAGATGCTCCTCCAGTTCGTTTATCCCCTAATTATCCCGAACCACCGTCTCAGGAGCCTACAGAGGATAATGCAACCATCGCAGAGCAGCCCAAGCTTATGAGTGCCGCTTTGGTGAAAGCTGCTAAGCAGTTTGATGCATTGGTTGCAGCATTGCCTCTATCTGATGGAGGTGAAGAAGAGCAGTTGAAAAGGATTGCAGAACTACAGGCTGAGAACGATGTTGTAGGTCAAGAACTTCAAAAACAGCTACAAGCAGCAGGTGTTATCTCTGTCTTCTTGTTAATCTCTACATTTTCAAACCGTGCCCCGGTGTGGTTACATAAGACTGATGTTGTTTGGCTGGCGACTTACTTTAGTTGA MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAGVISVFLLISTFSNRAPVWLHKTDVVWLATYFS*
BLAST of Cucsa.152690 vs. Swiss-Prot
Match: MED21_ARATH (Mediator of RNA polymerase II transcription subunit 21 OS=Arabidopsis thaliana GN=MED21 PE=1 SV=1) HSP 1 Score: 174.9 bits (442), Expect = 6.6e-43 Identity = 91/114 (79.82%), Postives = 99/114 (86.84%), Query Frame = 1
BLAST of Cucsa.152690 vs. TrEMBL
Match: A0A0A0KZ00_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G268030 PE=4 SV=1) HSP 1 Score: 219.2 bits (557), Expect = 3.4e-54 Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 1
BLAST of Cucsa.152690 vs. TrEMBL
Match: M1BD21_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400016459 PE=4 SV=1) HSP 1 Score: 198.4 bits (503), Expect = 6.2e-48 Identity = 101/113 (89.38%), Postives = 104/113 (92.04%), Query Frame = 1
BLAST of Cucsa.152690 vs. TrEMBL
Match: A0A0V0HDL0_SOLCH (Putative mediator of RNA polymerase II transcription subunit 21-like OS=Solanum chacoense PE=4 SV=1) HSP 1 Score: 198.4 bits (503), Expect = 6.2e-48 Identity = 101/113 (89.38%), Postives = 104/113 (92.04%), Query Frame = 1
BLAST of Cucsa.152690 vs. TrEMBL
Match: K4B9R4_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1) HSP 1 Score: 196.1 bits (497), Expect = 3.1e-47 Identity = 100/113 (88.50%), Postives = 103/113 (91.15%), Query Frame = 1
BLAST of Cucsa.152690 vs. TrEMBL
Match: A0A0B0NJA9_GOSAR (Mediator of RNA polymerase II transcription subunit 21-like protein OS=Gossypium arboreum GN=F383_01405 PE=4 SV=1) HSP 1 Score: 193.0 bits (489), Expect = 2.6e-46 Identity = 100/114 (87.72%), Postives = 106/114 (92.98%), Query Frame = 1
BLAST of Cucsa.152690 vs. TAIR10
Match: AT4G04780.1 (AT4G04780.1 mediator 21) HSP 1 Score: 174.9 bits (442), Expect = 3.7e-44 Identity = 91/114 (79.82%), Postives = 99/114 (86.84%), Query Frame = 1
BLAST of Cucsa.152690 vs. NCBI nr
Match: gi|449463842|ref|XP_004149640.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 21 [Cucumis sativus]) HSP 1 Score: 219.2 bits (557), Expect = 4.9e-54 Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 1
BLAST of Cucsa.152690 vs. NCBI nr
Match: gi|659097951|ref|XP_008449895.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 21 [Cucumis melo]) HSP 1 Score: 217.2 bits (552), Expect = 1.9e-53 Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 1
BLAST of Cucsa.152690 vs. NCBI nr
Match: gi|698553700|ref|XP_009770009.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 21-like isoform X2 [Nicotiana sylvestris]) HSP 1 Score: 201.1 bits (510), Expect = 1.4e-48 Identity = 103/114 (90.35%), Postives = 105/114 (92.11%), Query Frame = 1
BLAST of Cucsa.152690 vs. NCBI nr
Match: gi|698553696|ref|XP_009770008.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 21-like isoform X1 [Nicotiana sylvestris]) HSP 1 Score: 198.7 bits (504), Expect = 6.9e-48 Identity = 102/113 (90.27%), Postives = 104/113 (92.04%), Query Frame = 1
BLAST of Cucsa.152690 vs. NCBI nr
Match: gi|565362742|ref|XP_006348104.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 21 [Solanum tuberosum]) HSP 1 Score: 198.4 bits (503), Expect = 9.0e-48 Identity = 101/113 (89.38%), Postives = 104/113 (92.04%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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