Cla97C02G050680 (gene) Watermelon (97103) v2

Overview
NameCla97C02G050680
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
Descriptionmediator of RNA polymerase II transcription subunit 21
LocationCla97Chr02 : 37785824 .. 37787948 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACATAATTTCCCAACTGCAGGAACAAGTTAACACAATTGCTGCATTAGCTTTCAACACATTTGGGACATTACAAAGAGACGCTCCTCCAGTTCGTTTATCCCCTAATTACCCCGAACCACCGTCTCACGAACCTACGGAGGACTCTGCAAATATCGCAGAGCAGCCCAAGCTTATGAGTGCCGCTTTGGTGAAAGCTGCTAAGCAGGTGTGAATTAATTATTCTGTGGGATTTACGTGTTTGCTCGATTCTTAATACTTCGGGGTCAGAAATATGCCTCTGGTTAATACCTTCTCACGGGTTGAAACATCAAGAAAGTATTTGCCTTATCCTTTTGGGGAAAATTTATGTTGCTATTTTTGTTTTCAATTGTCAGTATCCTAGATTAACTTTATATGCATTCTGTCTACTGGATAAGTAACCGAGAATCTACTATCTACTTGAAGCACCTTGTGTCGAGGTTGGAAGAGAGTGTAATATCAAGGCAGCAGATTGCCTGCTATTTGTTTGAGATGCGTACACAGTCTAATGCTATGATCTATGATACAATCAATCAAAGGGAGCCAATTTAGTATTGGAAACTTCAATCTATTTTTGCCAACCAACGTCAGATACTACTTAAGTAGCTATGGCGTTTCGGATTGACTATAAAACAAAGTACTGTGAATTTTTTCAGTTATTCTTTGCTTTTAACCGCCTGTTATGTATATTTAGCCACACTATGGGCTCTTTATGCGTGTTGATATTTTGGAATCCACTATTCAAACCTTGTATTGTATTTGAGCAATTCTGCTGAGAGAATTTTGATTTTCATAAGTTTCCAGCCACGGAATTGAATGTAGCAATGAATTAAGATTTGTTCTTTCGAATAATTTTTTAAAGGAATATATAGAGTTTATAATATTAACCGAGTCTGTCCACATTACGTTTGGGAATTCCGTTTTGGTAGGAGTAAGGTATATATTTTTTTCTTTTTTTGATATCTGTGAGTGTCCGGGCGCTTACGCGCACCTCGACTAATCTCATGGGACAACCCGCCTGACCCTACAACATTTGGGTATCAAAGAAACTTATTGGTATATTATTTATTAGCTTTATGAGGAATTGTAGAGAGTCCATTGAGGAGTTTCTCCTCCATCCATCTTTTTCTTTTAGAAAAGGTTGTTTTTGTAGTAGGTTGGAGTGGGGTTTGTGGGCCGAGGGAAATAATAGAATCTTGGGATCTTGGAGATTCTCTGTTTCACTTTGGACTTTGATGTTAGTTTATTGGAATACTCTATTAGTCACATTTCACTCAATTGGAGCCCCTTCTTATAGTTAGCTCCCTTTTTTGTGGGCTTAACCTTTATGTATGTCTGTGTATTTTTTCATCTTTTTCAATAAAAGTCTAGTTTTACATCAAAAAACAAAATTTATTAGCATTTTGAACAAAAGAAAGGGTTGGGAAATCCAATTGAACATGTGTACCTTTTAAAAAAATTTTATTGTTACTATTTTCTGGCACAGTTTGATGCATTGGTTGCAGCATTGCCTCTATCTGATGGAGGTGAAGAAGAGCAGTTGAAAAGGATTGCAGAACTACAGGTATGAATCTTCTCATATTCTGATCTTGTTATAAGACCAAGAATTCTTGTGTTGTTTACCCTCTTGGTACGTTGAAAACTTGTTATCCATTCCAGGTTGAGAACGATGCTGTAGGTCAAGAACTTCAAAAGCAACTACAAGCAGCAGGTGTTATCTCTGTCTTCTTGTTAATCTTTATATTTTTAACATCCGTAGATGCAAATTATAGGTCCACCATGACTTTGAAAGCCTACCCAAAAAGAAAAATAAATAAATAAATAAAATAAGAGTTTCTATTTTAGATCGTTACTGCCGTATGGTTTCATTTCATAAGTTATCGAATTGTTGTCTGGCTTGCGACTTACAATGGTTCAAATAATTTAAGCCCCAAATTTCTCATGTTCAGTCCATTCTATTGAATATACTGATATTTCGCCACAGCTGCACAACTAACAATCTTACTGAAGCTATGTCTGTTGCAGAGAAAGAATTAATACAAGTTCAGGAGTTGTTCAGCCAAGTGGCAGATAATTGCTTGAACTTAAAGAAAGCAGATTGA

mRNA sequence

ATGGACATAATTTCCCAACTGCAGGAACAAGTTAACACAATTGCTGCATTAGCTTTCAACACATTTGGGACATTACAAAGAGACGCTCCTCCAGTTCGTTTATCCCCTAATTACCCCGAACCACCGTCTCACGAACCTACGGAGGACTCTGCAAATATCGCAGAGCAGCCCAAGCTTATGAGTGCCGCTTTGGTGAAAGCTGCTAAGCAGTTTGATGCATTGGTTGCAGCATTGCCTCTATCTGATGGAGGTGAAGAAGAGCAGTTGAAAAGGATTGCAGAACTACAGGTTGAGAACGATGCTGTAGGTCAAGAACTTCAAAAGCAACTACAAGCAGCAGAGAAAGAATTAATACAAGTTCAGGAGTTGTTCAGCCAAGTGGCAGATAATTGCTTGAACTTAAAGAAAGCAGATTGA

Coding sequence (CDS)

ATGGACATAATTTCCCAACTGCAGGAACAAGTTAACACAATTGCTGCATTAGCTTTCAACACATTTGGGACATTACAAAGAGACGCTCCTCCAGTTCGTTTATCCCCTAATTACCCCGAACCACCGTCTCACGAACCTACGGAGGACTCTGCAAATATCGCAGAGCAGCCCAAGCTTATGAGTGCCGCTTTGGTGAAAGCTGCTAAGCAGTTTGATGCATTGGTTGCAGCATTGCCTCTATCTGATGGAGGTGAAGAAGAGCAGTTGAAAAGGATTGCAGAACTACAGGTTGAGAACGATGCTGTAGGTCAAGAACTTCAAAAGCAACTACAAGCAGCAGAGAAAGAATTAATACAAGTTCAGGAGTTGTTCAGCCAAGTGGCAGATAATTGCTTGAACTTAAAGAAAGCAGATTGA

Protein sequence

MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSHEPTEDSANIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQVENDAVGQELQKQLQAAEKELIQVQELFSQVADNCLNLKKAD
Homology
[Close]
BLAST of Cla97C02G050680 vs. NCBI nr
Match: XP_004149640.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 21 [Cucumis sativus] >KGN54019.1 hypothetical protein Csa_4G268030 [Cucumis sativus])

HSP 1 Score: 248.1 bits (632), Expect = 1.8e-62
Identity = 132/138 (95.65%), Postives = 134/138 (97.10%), Query Frame = 0 

Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSHEPTEDSANIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPS EPTED+A IAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQVENDAVGQELQKQLQAAEKELIQV 120
           SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQ END VGQELQKQLQAAEKEL+QV
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEKELVQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELFSQVADNCLNLKKAD
Sbjct: 121 QELFSQVADNCLNLKKAD 138

[Close]
BLAST of Cla97C02G050680 vs. NCBI nr
Match: XP_008449895.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 21 [Cucumis melo])

HSP 1 Score: 247.7 bits (631), Expect = 2.3e-62
Identity = 132/138 (95.65%), Postives = 134/138 (97.10%), Query Frame = 0 

Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSHEPTEDSANIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPS EPTEDSA IAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQVENDAVGQELQKQLQAAEKELIQV 120
           SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQ END VGQELQKQLQAAE+EL+QV
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELFSQVADNCLNLKKAD
Sbjct: 121 QELFSQVADNCLNLKKAD 138

[Close]
BLAST of Cla97C02G050680 vs. NCBI nr
Match: XP_022958635.1 (mediator of RNA polymerase II transcription subunit 21 [Cucurbita moschata] >XP_022958636.1 mediator of RNA polymerase II transcription subunit 21 [Cucurbita moschata] >XP_022996209.1 mediator of RNA polymerase II transcription subunit 21 [Cucurbita maxima] >XP_022996211.1 mediator of RNA polymerase II transcription subunit 21 [Cucurbita maxima])

HSP 1 Score: 247.7 bits (631), Expect = 2.3e-62
Identity = 132/138 (95.65%), Postives = 133/138 (96.38%), Query Frame = 0 

Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSHEPTEDSANIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPP HEPTEDSAN AEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDSANFAEQPKLM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQVENDAVGQELQKQLQAAEKELIQV 120
           SAALVKAAKQFD LVAALPLSDGGEEEQLKRIAELQ ENDAVGQELQKQL+AAEKEL QV
Sbjct: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELFSQVADNCLNLKKAD
Sbjct: 121 QELFSQVADNCLNLKKAD 138

[Close]
BLAST of Cla97C02G050680 vs. NCBI nr
Match: XP_022153730.1 (mediator of RNA polymerase II transcription subunit 21 [Momordica charantia])

HSP 1 Score: 245.0 bits (624), Expect = 1.5e-61
Identity = 132/138 (95.65%), Postives = 133/138 (96.38%), Query Frame = 0 

Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSHEPTEDSANIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLS NYPEPPS EPTEDSANIAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSSNYPEPPSQEPTEDSANIAEQPKLM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQVENDAVGQELQKQLQAAEKELIQV 120
           SAALVKAAKQFD LVAALPLSDGGEEEQLKRIAELQ ENDAVGQELQKQL+AAEKEL QV
Sbjct: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELFSQVADNCLNLKKAD
Sbjct: 121 QELFSQVADNCLNLKKAD 138

[Close]
BLAST of Cla97C02G050680 vs. NCBI nr
Match: XP_023532119.1 (mediator of RNA polymerase II transcription subunit 21 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 245.0 bits (624), Expect = 1.5e-61
Identity = 130/138 (94.20%), Postives = 132/138 (95.65%), Query Frame = 0 

Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSHEPTEDSANIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPP HEPT+DSAN  EQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTDDSANFVEQPKLM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQVENDAVGQELQKQLQAAEKELIQV 120
           SAALVKAAKQFD LVAALPLSDGGEEEQLKRIAELQ ENDAVGQELQKQL+AAEKEL QV
Sbjct: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELFSQVADNCLNLKKAD
Sbjct: 121 QELFSQVADNCLNLKKAD 138

[Close]
BLAST of Cla97C02G050680 vs. TrEMBL
Match: tr|A0A0A0KZ00|A0A0A0KZ00_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G268030 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 1.2e-62
Identity = 132/138 (95.65%), Postives = 134/138 (97.10%), Query Frame = 0 

Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSHEPTEDSANIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPS EPTED+A IAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQVENDAVGQELQKQLQAAEKELIQV 120
           SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQ END VGQELQKQLQAAEKEL+QV
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEKELVQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELFSQVADNCLNLKKAD
Sbjct: 121 QELFSQVADNCLNLKKAD 138

[Close]
BLAST of Cla97C02G050680 vs. TrEMBL
Match: tr|A0A1S3BN38|A0A1S3BN38_CUCME (mediator of RNA polymerase II transcription subunit 21 OS=Cucumis melo OX=3656 GN=LOC103491637 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 1.6e-62
Identity = 132/138 (95.65%), Postives = 134/138 (97.10%), Query Frame = 0 

Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSHEPTEDSANIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPS EPTEDSA IAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQVENDAVGQELQKQLQAAEKELIQV 120
           SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQ END VGQELQKQLQAAE+EL+QV
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELFSQVADNCLNLKKAD
Sbjct: 121 QELFSQVADNCLNLKKAD 138

[Close]
BLAST of Cla97C02G050680 vs. TrEMBL
Match: tr|A0A2R6RBJ7|A0A2R6RBJ7_ACTCH (Mediator of RNA polymerase II transcription subunit like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc09759 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 4.4e-57
Identity = 123/138 (89.13%), Postives = 131/138 (94.93%), Query Frame = 0 

Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSHEPTEDSANIAEQPKLM 60
           MDIISQLQEQ NTIAALAFNTFGTLQRDAPPVRLSPNYPEPP++ PTED+AN+AEQPKLM
Sbjct: 1   MDIISQLQEQANTIAALAFNTFGTLQRDAPPVRLSPNYPEPPAN-PTEDAANVAEQPKLM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQVENDAVGQELQKQLQAAEKELIQV 120
           SAALVKAAKQFDALVAALPLS+GGE+ QLKRIAELQ ENDAVGQELQ+QL+AAEKEL QV
Sbjct: 61  SAALVKAAKQFDALVAALPLSEGGEDAQLKRIAELQAENDAVGQELQRQLEAAEKELKQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELFSQ ADNCLNLKK D
Sbjct: 121 QELFSQAADNCLNLKKPD 137

[Close]
BLAST of Cla97C02G050680 vs. TrEMBL
Match: tr|A0A1S4BT41|A0A1S4BT41_TOBAC (mediator of RNA polymerase II transcription subunit 21-like isoform X1 OS=Nicotiana tabacum OX=4097 GN=LOC107811605 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 4.4e-57
Identity = 122/138 (88.41%), Postives = 127/138 (92.03%), Query Frame = 0 

Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSHEPTEDSANIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPP   PTED+AN+AEQPK M
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPANPTEDAANVAEQPKQM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQVENDAVGQELQKQLQAAEKELIQV 120
           SAA VKAAKQFDALVAALPLSDGGEE QLKRIAELQ ENDAVGQELQKQL+AAEKEL QV
Sbjct: 61  SAAFVKAAKQFDALVAALPLSDGGEEAQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELF+Q  DNCLNLKK +
Sbjct: 121 QELFNQATDNCLNLKKPE 138

[Close]
BLAST of Cla97C02G050680 vs. TrEMBL
Match: tr|A0A1J6IVT0|A0A1J6IVT0_NICAT (Mediator of rna polymerase ii transcription subunit 21 OS=Nicotiana attenuata OX=49451 GN=MED21 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 4.4e-57
Identity = 122/138 (88.41%), Postives = 127/138 (92.03%), Query Frame = 0 

Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSHEPTEDSANIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPP   PTED+AN+AEQPK M
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPANPTEDAANVAEQPKQM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQVENDAVGQELQKQLQAAEKELIQV 120
           SAA VKAAKQFDALVAALPLSDGGEE QLKRIAELQ ENDAVGQELQKQL+AAEKEL QV
Sbjct: 61  SAAFVKAAKQFDALVAALPLSDGGEEAQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELF+Q  DNCLNLKK +
Sbjct: 121 QELFNQATDNCLNLKKPE 138

[Close]
BLAST of Cla97C02G050680 vs. Swiss-Prot
Match: sp|C0LU16|MED21_ARATH (Mediator of RNA polymerase II transcription subunit 21 OS=Arabidopsis thaliana OX=3702 GN=MED21 PE=1 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 3.7e-51
Identity = 110/139 (79.14%), Postives = 120/139 (86.33%), Query Frame = 0 

Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSHEP-TEDSANIAEQPKL 60
           MDIISQLQEQVNTIAA+ FN FGTLQRDAPPV+LSPNYPEPP+    T+D+    EQPK 
Sbjct: 1   MDIISQLQEQVNTIAAITFNAFGTLQRDAPPVQLSPNYPEPPATTTVTDDATPFPEQPKQ 60

Query: 61  MSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQVENDAVGQELQKQLQAAEKELIQ 120
           +SA LVKAAKQFDALVAALPLS+GGE  QLKRIAELQVEND VGQELQKQL+AAEKEL Q
Sbjct: 61  LSAGLVKAAKQFDALVAALPLSEGGEGAQLKRIAELQVENDLVGQELQKQLEAAEKELKQ 120

Query: 121 VQELFSQVADNCLNLKKAD 139
           VQELF Q ADNCLN+KK +
Sbjct: 121 VQELFGQAADNCLNMKKPE 139

[Close]
BLAST of Cla97C02G050680 vs. Swiss-Prot
Match: sp|Q6BER6|MED21_CAEEL (Mediator of RNA polymerase II transcription subunit 21 OS=Caenorhabditis elegans OX=6239 GN=mdt-21 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.4e-04
Identity = 38/129 (29.46%), Postives = 58/129 (44.96%), Query Frame = 0 

Query: 2   DIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSHEPTEDSANIAEQPKLMS 61
           D ++QLQ+ +N +A L  N  G LQ  APP        E       ED  N A    + +
Sbjct: 3   DRMTQLQDMINEMAGLMTNAIGVLQATAPPCEFGAISQE------LEDEPNCA----IFA 62

Query: 62  AALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQVENDAVGQELQKQLQAAEKELIQVQ 121
           A + KAAK  + L+ + P+  G +E +   + E  ++ND             EK+  +V 
Sbjct: 63  AGIAKAAKNIEILIDSFPIEAGNQEAE---VEEKMIKND-------------EKQREKVN 105

Query: 122 ELFSQVADN 131
           EL   V D+
Sbjct: 123 ELVGLVGDS 105

[Close]
BLAST of Cla97C02G050680 vs. Swiss-Prot
Match: sp|Q7ZTI5|MED21_DANRE (Mediator of RNA polymerase II transcription subunit 21 OS=Danio rerio OX=7955 GN=med21 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 4.4e-04
Identity = 37/139 (26.62%), Postives = 69/139 (49.64%), Query Frame = 0 

Query: 2   DIISQLQEQVNTIAALAFNTFGTLQRDAPP-----VRLSPNYPEPPSHEPTEDSANIAEQ 61
           D ++QLQ+ VN++A    N  G LQ+ APP     ++ + N  +P +  PTE+ A     
Sbjct: 3   DRLTQLQDAVNSLADQFCNAIGVLQQCAPPASFSNIQTAINKDQPSN--PTEEYA----- 62

Query: 62  PKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQVENDAVGQELQKQLQAAEKE 121
            +L +A + + AK  D L+ +LP  +     Q   + +L+ EN      L++ +   +  
Sbjct: 63  -QLFAALIARTAKDVDVLIDSLPSEESTAALQAASLRQLEEENQEAAARLEEVVYRGDAL 122

Query: 122 LIQVQELFSQVADNCLNLK 136
           L ++Q   + +A + L  +
Sbjct: 123 LEKIQTALADIAQSQLRTR 133

[Close]
BLAST of Cla97C02G050680 vs. Swiss-Prot
Match: sp|Q61BU1|MED21_CAEBR (Mediator of RNA polymerase II transcription subunit 21 OS=Caenorhabditis briggsae OX=6238 GN=mdt-21 PE=3 SV=2)

HSP 1 Score: 44.7 bits (104), Expect = 9.9e-04
Identity = 36/131 (27.48%), Postives = 66/131 (50.38%), Query Frame = 0 

Query: 2   DIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSHEPTEDSANIAEQPKLMS 61
           D ++QLQ+ +N +A+L  N  G LQ  APP             +  E+  N A    + +
Sbjct: 3   DRMTQLQDMINEMASLMTNAIGVLQATAPPCEFD------AISQDHEEEPNCA----IFA 62

Query: 62  AALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQVENDAVGQELQKQLQAAEKELIQ-- 121
           A++ K+AK  + L+ + P+  G  E++   + +  ++NDAV +E   +L+    E  Q  
Sbjct: 63  ASIAKSAKNIEILIDSFPIEAGNMEDE---VEQKMIQNDAVQREKVGELKELVGESTQLV 120

Query: 122 --VQELFSQVA 129
             VQ+  S+++
Sbjct: 123 SAVQKKLSEIS 120

[Close]
BLAST of Cla97C02G050680 vs. TAIR10
Match: AT4G04780.1 (mediator 21)

HSP 1 Score: 202.2 bits (513), Expect = 2.1e-52
Identity = 110/139 (79.14%), Postives = 120/139 (86.33%), Query Frame = 0 

Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSHEP-TEDSANIAEQPKL 60
           MDIISQLQEQVNTIAA+ FN FGTLQRDAPPV+LSPNYPEPP+    T+D+    EQPK 
Sbjct: 1   MDIISQLQEQVNTIAAITFNAFGTLQRDAPPVQLSPNYPEPPATTTVTDDATPFPEQPKQ 60

Query: 61  MSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQVENDAVGQELQKQLQAAEKELIQ 120
           +SA LVKAAKQFDALVAALPLS+GGE  QLKRIAELQVEND VGQELQKQL+AAEKEL Q
Sbjct: 61  LSAGLVKAAKQFDALVAALPLSEGGEGAQLKRIAELQVENDLVGQELQKQLEAAEKELKQ 120

Query: 121 VQELFSQVADNCLNLKKAD 139
           VQELF Q ADNCLN+KK +
Sbjct: 121 VQELFGQAADNCLNMKKPE 139

The following BLAST results are available for this feature:
BLAST of Cla97C02G050680 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004149640.11.8e-6295.65PREDICTED: mediator of RNA polymerase II transcription subunit 21 [Cucumis sativ... [more]
XP_008449895.12.3e-6295.65PREDICTED: mediator of RNA polymerase II transcription subunit 21 [Cucumis melo][more]
XP_022958635.12.3e-6295.65mediator of RNA polymerase II transcription subunit 21 [Cucurbita moschata] >XP_... [more]
XP_022153730.11.5e-6195.65mediator of RNA polymerase II transcription subunit 21 [Momordica charantia][more]
XP_023532119.11.5e-6194.20mediator of RNA polymerase II transcription subunit 21 [Cucurbita pepo subsp. pe... [more]
BLAST of Cla97C02G050680 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KZ00|A0A0A0KZ00_CUCSA1.2e-6295.65Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G268030 PE=4 SV=1[more]
tr|A0A1S3BN38|A0A1S3BN38_CUCME1.6e-6295.65mediator of RNA polymerase II transcription subunit 21 OS=Cucumis melo OX=3656 G... [more]
tr|A0A2R6RBJ7|A0A2R6RBJ7_ACTCH4.4e-5789.13Mediator of RNA polymerase II transcription subunit like OS=Actinidia chinensis ... [more]
tr|A0A1S4BT41|A0A1S4BT41_TOBAC4.4e-5788.41mediator of RNA polymerase II transcription subunit 21-like isoform X1 OS=Nicoti... [more]
tr|A0A1J6IVT0|A0A1J6IVT0_NICAT4.4e-5788.41Mediator of rna polymerase ii transcription subunit 21 OS=Nicotiana attenuata OX... [more]
BLAST of Cla97C02G050680 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|C0LU16|MED21_ARATH3.7e-5179.14Mediator of RNA polymerase II transcription subunit 21 OS=Arabidopsis thaliana O... [more]
sp|Q6BER6|MED21_CAEEL3.4e-0429.46Mediator of RNA polymerase II transcription subunit 21 OS=Caenorhabditis elegans... [more]
sp|Q7ZTI5|MED21_DANRE4.4e-0426.62Mediator of RNA polymerase II transcription subunit 21 OS=Danio rerio OX=7955 GN... [more]
sp|Q61BU1|MED21_CAEBR9.9e-0427.48Mediator of RNA polymerase II transcription subunit 21 OS=Caenorhabditis briggsa... [more]
BLAST of Cla97C02G050680 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G04780.12.1e-5279.14mediator 21[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016592mediator complex
Vocabulary: INTERPRO
TermDefinition
IPR037212Med7/Med21-like
IPR021384Mediator_Med21
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0050832 defense response to fungus
biological_process GO:0006357 regulation of transcription from RNA polymerase II promoter
biological_process GO:0009817 defense response to fungus, incompatible interaction
biological_process GO:0008150 biological_process
cellular_component GO:0016592 mediator complex
cellular_component GO:0005634 nucleus
cellular_component GO:0043078 polar nucleus
molecular_function GO:0003674 molecular_function
molecular_function GO:0003723 RNA binding
molecular_function GO:0001104 RNA polymerase II transcription cofactor activity
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C02G050680.1Cla97C02G050680.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 92..130
NoneNo IPR availableGENE3DG3DSA:1.20.58.470coord: 1..130
e-value: 2.0E-17
score: 65.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..50
IPR021384Mediator complex, subunit Med21PFAMPF11221Med21coord: 1..128
e-value: 6.2E-27
score: 94.5
IPR021384Mediator complex, subunit Med21PANTHERPTHR13381RNA POLYMERASE II HOLOENZYME COMPONENT SRB7coord: 1..137
IPR037212Mediator complex, subunit Med7/Med21-likeSUPERFAMILYSSF140718Mediator hinge subcomplex-likecoord: 1..126

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C02G050680Csa4G268030Cucumber (Chinese Long) v2cuwmbB287
Cla97C02G050680MELO3C014729Melon (DHL92) v3.5.1mewmbB377
Cla97C02G050680CSPI04G12500Wild cucumber (PI 183967)cpiwmbB294
Cla97C02G050680Cucsa.152690Cucumber (Gy14) v1cgywmbB259
Cla97C02G050680CmaCh02G011630Cucurbita maxima (Rimu)cmawmbB629
Cla97C02G050680CmoCh02G011970Cucurbita moschata (Rifu)cmowmbB602
Cla97C02G050680Lsi10G009150Bottle gourd (USVL1VR-Ls)lsiwmbB052
Cla97C02G050680MELO3C014729.2Melon (DHL92) v3.6.1medwmbB368
Cla97C02G050680Carg13978Silver-seed gourdcarwmbB0531
Cla97C02G050680CsaV3_4G017560Cucumber (Chinese Long) v3cucwmbB290
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C02G050680Cucumber (Gy14) v2cgybwmbB272
Cla97C02G050680Cucurbita maxima (Rimu)cmawmbB577
Cla97C02G050680Cucurbita moschata (Rifu)cmowmbB557
Cla97C02G050680Watermelon (Charleston Gray)wcgwmbB138
Cla97C02G050680Watermelon (97103) v1wmwmbB316
Cla97C02G050680Wax gourdwgowmbB353