Cucsa.152690 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.152690
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Mediator of RNA polymerase II transcription subunit 21
Location	scaffold01124 : 81612 .. 84096 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GACGTTCTAAAACTAGAAAATTAGGAAGGTATAAGGAAAAGAAGGAACCCTAATTCATCTGCTTTTTCTCCGACTCACGTTCAACCGCCCAGCCCCTTCCTTGTCTCCGGTAGCATCTCGATGACAGTCCTTTGAGATAAACGGCGGATCGTACTCTCACTCACTCAGTTTCTGGAACTGATTTGCTGATTAAAAGGAGCGATATGTGTATTATTTGCGGAATCATCTTCTGAACAATTCATCCTAGGGATAAGGTTGAAGATGGATATAATTTCCCAATTGCAGGAACAAGTTAACACAATTGCTGCTTTAGCTTTCAACACATTTGGGACATTGCAAAGAGATGCTCCTCCAGTTCGTTTATCCCCTAATTATCCCGAACCACCGTCTCAGGAGCCTACAGAGGATAATGCAACCATCGCAGAGCAGCCCAAGCTTATGAGTGCCGCTTTGGTGAAAGCTGCTAAGCAGGTGCGTATCATTTATTCTGCACTTTAATACTTCGGGGTGGAAAATATGAATGAGTTAGAGTACCTCTTGTTAATAAACTTTCCACGCATTGAAACATCAAGAAAAATATTTGCATTTTCCATTTGAGGAAATTCAGTGTCCTAGATTAACTTTACATGCATTCTGTCTAGTGTCTACTGGGTAAGTAGCCGAGAATGCAGTATCTACTTGAAGCACCCTTGTGTTGAGGTTGGAAGAGAAAGAAAAATCAAGGCAGCAGGTTTCATGCTACTTGTTTGAGATGAGTACATATTCTAATGCTATGATATATGATACAATCCACAAATTTGGTATTGAAAACTTCAGTCTATTTTTCCCATCTAACATCAAATACTACTGAGGTAGGTATGGCTATTCGATCGGCAATAAAaCAAaGTACTATGGTTCTTTTTTTtAGTTATCCTTTtACTTTTtAACTGCTTGTTATGTATATTTAGGCCCACTTTAAGGTGTTCTTTAAGTGTTGATATTTTGGAATCTGATACTCAAACCCTGTATTTGAGCAATTTTGCTGAGAGAGTTTTGATTTTCACAAGTTTCCATCGTCGAACTCAGCAATGCATTTAGGTTTGTTCTTCCGAATAATCTTTTAAGGATTATATAGAATTATAAAATAGACTGATTCTGTCCACGTTAAGTTTGAAAATCTCAGTGTGATAGTATTAAGTAATAGAAACGTACAAAGTTTTCCAACTCTGCTGGACTTTTAATGACTTCTAGATGTGATTCTACAACGAGTTAGATTTGTTCTATATATTCTCTCATTTTCTGTATTTTTTACGTTTACCTCTTGATTGGTATGTTATTTTATTAGTTTTTTGAGGAGTTGCAAGGAGCCAACTGAGGAATTTCTCCTCCATCCACTTTTCTCTCTCGGAGAAATGGCTGTTTTCATAGTAGGTTGGAGTATATGCTAATTTGTGGGGTTTGGGGTGCGAGAGAAATGATAGAATCTTCAAGGGAGAAATAACCGAATCTTGGATCTTGAAGATTCGTTTTTAATAATTAATCGCTTAGTCACATTTCACTTGATTGGAGCCCTTCCCCTTCTTATAGTTAGCTACACTTTCTGTGAACACCATTCTGTATGGTTATGTATTCTTTCACCTTGTTTTTCAACAAAAGTCTAGTTGTACATCAAAAACAAAATTTATCAGCATTTTGAACAAAAGAAAGGGATGGGATCTTGCTTCATTTATTTGCAATTATCCAATTGAACATGTGTACCTTTTCTTAAAAAAaTTATTGTCAATATTTTCTAGCACAGTTTGATGCATTGGTTGCAGCATTGCCTCTATCTGATGGAGGTGAAGAAGAGCAGTTGAAAAGGATTGCAGAACTACAGGTATGAATTCTCATATTCTGATGTTGATATAAGATCAAGAGTTGTTGTGTTGTTTACTTCTCTCAGTATGTATTTCAGGCTGAGAACGATGTTGTAGGTCAAGAACTTCAAAAACAGCTACAAGCAGCAGGTGTTATCTCTGTCTTCTTGTTAATCTCTACATTTTCAAACCGTGCCCCGGTGTGGTTACATAAGACTGATGTTGTTTGGCTGGCGACTTACTTTAGTTGAAATAATTCTATTTAATAATTTTAGCC

mRNA sequence

GACGTTCTAAAACTAGAAAATTAGGAAGGTATAAGGAAAAGAAGGAACCCTAATTCATCTGCTTTTTCTCCGACTCACGTTCAACCGCCCAGCCCCTTCCTTGTCTCCGGTAGCATCTCGATGACAGTCCTTTGAGATAAACGGCGGATCGTACTCTCACTCACTCAGTTTCTGGAACTGATTTGCTGATTAAAAGGAGCGATATGTGTATTATTTGCGGAATCATCTTCTGAACAATTCATCCTAGGGATAAGGTTGAAGATGGATATAATTTCCCAATTGCAGGAACAAGTTAACACAATTGCTGCTTTAGCTTTCAACACATTTGGGACATTGCAAAGAGATGCTCCTCCAGTTCGTTTATCCCCTAATTATCCCGAACCACCGTCTCAGGAGCCTACAGAGGATAATGCAACCATCGCAGAGCAGCCCAAGCTTATGAGTGCCGCTTTGGTGAAAGCTGCTAAGCAGTTTGATGCATTGGTTGCAGCATTGCCTCTATCTGATGGAGGTGAAGAAGAGCAGTTGAAAAGGATTGCAGAACTACAGGCTGAGAACGATGTTGTAGGTCAAGAACTTCAAAAACAGCTACAAGCAGCAGGTGTTATCTCTGTCTTCTTGTTAATCTCTACATTTTCAAACCGTGCCCCGGTGTGGTTACATAAGACTGATGTTGTTTGGCTGGCGACTTACTTTAGTTGAAATAATTCTATTTAATAATTTTAGCC

Coding sequence (CDS)

ATGGATATAATTTCCCAATTGCAGGAACAAGTTAACACAATTGCTGCTTTAGCTTTCAACACATTTGGGACATTGCAAAGAGATGCTCCTCCAGTTCGTTTATCCCCTAATTATCCCGAACCACCGTCTCAGGAGCCTACAGAGGATAATGCAACCATCGCAGAGCAGCCCAAGCTTATGAGTGCCGCTTTGGTGAAAGCTGCTAAGCAGTTTGATGCATTGGTTGCAGCATTGCCTCTATCTGATGGAGGTGAAGAAGAGCAGTTGAAAAGGATTGCAGAACTACAGGCTGAGAACGATGTTGTAGGTCAAGAACTTCAAAAACAGCTACAAGCAGCAGGTGTTATCTCTGTCTTCTTGTTAATCTCTACATTTTCAAACCGTGCCCCGGTGTGGTTACATAAGACTGATGTTGTTTGGCTGGCGACTTACTTTAGTTGA

Protein sequence

MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAGVISVFLLISTFSNRAPVWLHKTDVVWLATYFS*

Homology

[Close]

BLAST of Cucsa.152690 vs. Swiss-Prot
Match: MED21_ARATH (Mediator of RNA polymerase II transcription subunit 21 OS=Arabidopsis thaliana GN=MED21 PE=1 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 6.6e-43
Identity = 91/114 (79.82%), Postives = 99/114 (86.84%), Query Frame = 1


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNAT-IAEQPKL 60
           MDIISQLQEQVNTIAA+ FN FGTLQRDAPPV+LSPNYPEPP+     D+AT   EQPK 
Sbjct: 1   MDIISQLQEQVNTIAAITFNAFGTLQRDAPPVQLSPNYPEPPATTTVTDDATPFPEQPKQ 60

Query: 61  MSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAA 114
           +SA LVKAAKQFDALVAALPLS+GGE  QLKRIAELQ END+VGQELQKQL+AA
Sbjct: 61  LSAGLVKAAKQFDALVAALPLSEGGEGAQLKRIAELQVENDLVGQELQKQLEAA 114

[Close]

BLAST of Cucsa.152690 vs. TrEMBL
Match: A0A0A0KZ00_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G268030 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 3.4e-54
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 1


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAA 114
           SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAA
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAA 113

[Close]

BLAST of Cucsa.152690 vs. TrEMBL
Match: M1BD21_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400016459 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 6.2e-48
Identity = 101/113 (89.38%), Postives = 104/113 (92.04%), Query Frame = 1


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPP   PTED+  +AEQPK M
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPANPTEDSTNVAEQPKQM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAA 114
           SAA VKAAKQFDALVAALPLSDGGEE QLKRIAELQAEND VGQELQKQL+AA
Sbjct: 61  SAAFVKAAKQFDALVAALPLSDGGEEAQLKRIAELQAENDAVGQELQKQLEAA 113

[Close]

BLAST of Cucsa.152690 vs. TrEMBL
Match: A0A0V0HDL0_SOLCH (Putative mediator of RNA polymerase II transcription subunit 21-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 6.2e-48
Identity = 101/113 (89.38%), Postives = 104/113 (92.04%), Query Frame = 1


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPP   PTED+  +AEQPK M
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPANPTEDSTNVAEQPKQM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAA 114
           SAA VKAAKQFDALVAALPLSDGGEE QLKRIAELQAEND VGQELQKQL+AA
Sbjct: 61  SAAFVKAAKQFDALVAALPLSDGGEEAQLKRIAELQAENDAVGQELQKQLEAA 113

[Close]

BLAST of Cucsa.152690 vs. TrEMBL
Match: K4B9R4_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 3.1e-47
Identity = 100/113 (88.50%), Postives = 103/113 (91.15%), Query Frame = 1


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPP   PTED+A +AEQPK M
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPANPTEDSANVAEQPKQM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAA 114
           SAA VKAAKQFD LVAALPLSDG EE QLKRIAELQAEND VGQELQKQL+AA
Sbjct: 61  SAAFVKAAKQFDVLVAALPLSDGSEEAQLKRIAELQAENDAVGQELQKQLEAA 113

[Close]

BLAST of Cucsa.152690 vs. TrEMBL
Match: A0A0B0NJA9_GOSAR (Mediator of RNA polymerase II transcription subunit 21-like protein OS=Gossypium arboreum GN=F383_01405 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 2.6e-46
Identity = 100/114 (87.72%), Postives = 106/114 (92.98%), Query Frame = 1


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLM 60
           MDIISQLQEQVN+IAAL FNTFGTLQRDAPPVRLSPNYPEPPS  PTED+A  A+QPKLM
Sbjct: 1   MDIISQLQEQVNSIAALTFNTFGTLQRDAPPVRLSPNYPEPPSN-PTEDSANFADQPKLM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAG 115
           SAALVKAAKQFDALVAALP S+GGEE QL+RIAELQAEND VGQELQKQL+AAG
Sbjct: 61  SAALVKAAKQFDALVAALPPSEGGEEAQLRRIAELQAENDAVGQELQKQLEAAG 113

[Close]

BLAST of Cucsa.152690 vs. TAIR10
Match: AT4G04780.1 (AT4G04780.1 mediator 21)

HSP 1 Score: 174.9 bits (442), Expect = 3.7e-44
Identity = 91/114 (79.82%), Postives = 99/114 (86.84%), Query Frame = 1


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNAT-IAEQPKL 60
           MDIISQLQEQVNTIAA+ FN FGTLQRDAPPV+LSPNYPEPP+     D+AT   EQPK 
Sbjct: 1   MDIISQLQEQVNTIAAITFNAFGTLQRDAPPVQLSPNYPEPPATTTVTDDATPFPEQPKQ 60

Query: 61  MSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAA 114
           +SA LVKAAKQFDALVAALPLS+GGE  QLKRIAELQ END+VGQELQKQL+AA
Sbjct: 61  LSAGLVKAAKQFDALVAALPLSEGGEGAQLKRIAELQVENDLVGQELQKQLEAA 114

[Close]

BLAST of Cucsa.152690 vs. NCBI nr
Match: gi|449463842|ref|XP_004149640.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 21 [Cucumis sativus])

HSP 1 Score: 219.2 bits (557), Expect = 4.9e-54
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 1


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAA 114
           SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAA
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAA 113

[Close]

BLAST of Cucsa.152690 vs. NCBI nr
Match: gi|659097951|ref|XP_008449895.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 21 [Cucumis melo])

HSP 1 Score: 217.2 bits (552), Expect = 1.9e-53
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 1


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTED+ATIAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAA 114
           SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAA
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAA 113

[Close]

BLAST of Cucsa.152690 vs. NCBI nr
Match: gi|698553700|ref|XP_009770009.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 21-like isoform X2 [Nicotiana sylvestris])

HSP 1 Score: 201.1 bits (510), Expect = 1.4e-48
Identity = 103/114 (90.35%), Postives = 105/114 (92.11%), Query Frame = 1


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPP   PTED A +AEQPK M
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPANPTEDAANVAEQPKQM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAG 115
           SAA VKAAKQFDALVAALPLSDGGEE QLKRIAELQAEND VGQELQKQL+AAG
Sbjct: 61  SAAFVKAAKQFDALVAALPLSDGGEEAQLKRIAELQAENDAVGQELQKQLEAAG 114

[Close]

BLAST of Cucsa.152690 vs. NCBI nr
Match: gi|698553696|ref|XP_009770008.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 21-like isoform X1 [Nicotiana sylvestris])

HSP 1 Score: 198.7 bits (504), Expect = 6.9e-48
Identity = 102/113 (90.27%), Postives = 104/113 (92.04%), Query Frame = 1


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPP   PTED A +AEQPK M
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPANPTEDAANVAEQPKQM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAA 114
           SAA VKAAKQFDALVAALPLSDGGEE QLKRIAELQAEND VGQELQKQL+AA
Sbjct: 61  SAAFVKAAKQFDALVAALPLSDGGEEAQLKRIAELQAENDAVGQELQKQLEAA 113

[Close]

BLAST of Cucsa.152690 vs. NCBI nr
Match: gi|565362742|ref|XP_006348104.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 21 [Solanum tuberosum])

HSP 1 Score: 198.4 bits (503), Expect = 9.0e-48
Identity = 101/113 (89.38%), Postives = 104/113 (92.04%), Query Frame = 1


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPP   PTED+  +AEQPK M
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPANPTEDSTNVAEQPKQM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAA 114
           SAA VKAAKQFDALVAALPLSDGGEE QLKRIAELQAEND VGQELQKQL+AA
Sbjct: 61  SAAFVKAAKQFDALVAALPLSDGGEEAQLKRIAELQAENDAVGQELQKQLEAA 113

The following BLAST results are available for this feature:

BLAST of Cucsa.152690 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MED21_ARATH	6.6e-43	79.82	Mediator of RNA polymerase II transcription subunit 21 OS=Arabidopsis thaliana G...	[more]

BLAST of Cucsa.152690 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZ00_CUCSA	3.4e-54	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G268030 PE=4 SV=1	[more]
M1BD21_SOLTU	6.2e-48	89.38	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400016459 PE=4 SV=1	[more]
A0A0V0HDL0_SOLCH	6.2e-48	89.38	Putative mediator of RNA polymerase II transcription subunit 21-like OS=Solanum ...	[more]
K4B9R4_SOLLC	3.1e-47	88.50	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
A0A0B0NJA9_GOSAR	2.6e-46	87.72	Mediator of RNA polymerase II transcription subunit 21-like protein OS=Gossypium...	[more]

BLAST of Cucsa.152690 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G04780.1	3.7e-44	79.82	mediator 21	[more]

BLAST of Cucsa.152690 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449463842\|ref\|XP_004149640.1\|	4.9e-54	100.00	PREDICTED: mediator of RNA polymerase II transcription subunit 21 [Cucumis sativ...	[more]
gi\|659097951\|ref\|XP_008449895.1\|	1.9e-53	99.12	PREDICTED: mediator of RNA polymerase II transcription subunit 21 [Cucumis melo]	[more]
gi\|698553700\|ref\|XP_009770009.1\|	1.4e-48	90.35	PREDICTED: mediator of RNA polymerase II transcription subunit 21-like isoform X...	[more]
gi\|698553696\|ref\|XP_009770008.1\|	6.9e-48	90.27	PREDICTED: mediator of RNA polymerase II transcription subunit 21-like isoform X...	[more]
gi\|565362742\|ref\|XP_006348104.1\|	9.0e-48	89.38	PREDICTED: mediator of RNA polymerase II transcription subunit 21 [Solanum tuber...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021384	Mediator_Med21
IPR021384	Mediator_Med21

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050832	defense response to fungus
biological_process	GO:0008150	biological_process
cellular_component	GO:0016592	mediator complex
cellular_component	GO:0043078	polar nucleus
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.152690.1	Cucsa.152690.1	mRNA
Cucsa.152690.2	Cucsa.152690.2	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021384	Mediator complex, subunit Med21	PFAM	PF11221	Med21	coord: 1..128 score: 1.4
None	No IPR available	unknown	Coil	Coil	coord: 92..130 scor
None	No IPR available	PANTHER	PTHR13381	RNA POLYMERASE II HOLOENZYME COMPONENT SRB7	coord: 1..134 score: 9.4
None	No IPR available	unknown	SSF140718	Mediator hinge subcomplex-like	coord: 1..126 score: 6.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.152690	Cla003123	Watermelon (97103) v1	cgywmB272
Cucsa.152690	Csa4G268030	Cucumber (Chinese Long) v2	cgycuB220
Cucsa.152690	MELO3C014729	Melon (DHL92) v3.5.1	cgymeB257
Cucsa.152690	ClCG02G024420	Watermelon (Charleston Gray)	cgywcgB258
Cucsa.152690	CSPI04G12500	Wild cucumber (PI 183967)	cgycpiB225
Cucsa.152690	CmaCh02G011630	Cucurbita maxima (Rimu)	cgycmaB0424
Cucsa.152690	CmoCh02G011970	Cucurbita moschata (Rifu)	cgycmoB0424
Cucsa.152690	Lsi10G009150	Bottle gourd (USVL1VR-Ls)	cgylsiB245
Cucsa.152690	Cp4.1LG05g05620	Cucurbita pepo (Zucchini)	cgycpeB0410
Cucsa.152690	MELO3C014729.2	Melon (DHL92) v3.6.1	cgymedB255
Cucsa.152690	CsaV3_4G017560	Cucumber (Chinese Long) v3	cgycucB232
Cucsa.152690	Cla97C02G050680	Watermelon (97103) v2	cgywmbB259
Cucsa.152690	Bhi10G000403	Wax gourd	cgywgoB298
Cucsa.152690	Carg13978	Silver-seed gourd	carcgyB0580

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.152690	Cucurbita maxima (Rimu)	cgycmaB0423
Cucsa.152690	Cucurbita moschata (Rifu)	cgycmoB0423
Cucsa.152690	Cucurbita pepo (Zucchini)	cgycpeB0409