Cp4.1LG05g05620 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG05g05620
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Mediator of RNA polymerase II transcription subunit 21
Location	Cp4.1LG05 : 3407896 .. 3410592 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCTGGACAATTCTTCTGGGGGATAAGGTTCGAAATGGACATTATTTCCCAACTACAGGAACAAGTCAATACAATTGCTGCTTTAGCTTTCAATACTTTTGGGACATTGCAGAGAGATGCTCCTCCAGTTCGTTTATCTCCTAATTACCCCGAACCTCCGCCTCACGAACCTACAGATGACAGTGCAAACTTCGTAGAGCAGCCCAAGCTAATGAGTGCCGCTTTGGTGAAAGCCGCTAAGCAGGTGTGATTTTTATTTTGCAGGATTGTGTTTGCCGTTGTTCATGCTAAGTGTGTAGTTCATTGGTTCTTGTACTTTTGGGGTGGAAAATATGAATGTGATGCATATGCCTCTTGTTATTTACTTTTTCATGGGTCGAAACATCAAGAAAGTATTTTCTTCTTCCTTTTGGGGAGATTTTAGATTGCCATTTTTTTTTTTCAAATGTCAGTTTCCTAGATTGATTAACTTTACATGCTTTCTATCTACTGGATAAGTAATTGAGAATCAACTGTCTACTCGAAGCACCTGATGAGATTGGAAGAGATGCATTTCATTCACCCTCAAATGCTCGTTTGTTAGATCTAGTTAATGTTAAGTCTGAACTTGTGTTGTCTGAGGACGAACAGGACTGTGATTTCCTGCTTTTCAGCCGCTCATAACTTTTATTGCATTTTTGATGGGGTAGTAACATATCAAAGTAACAGAGTTCCCAGCTACTTGTTTGAGAGGCATACTAGTTCTAATGCNTTTAGATTGCCATTTTTTTTTATAAATGTCAGTATCCTAGATTGATTAACTTTACATGCTTTCTATCTACTGGATAAGTAATTGAGAATCAACTGTCTACTCGAAGCACCTGATGAGATTGGAAGAGATGCATTTCATTCACCCTCAAATGCTCGTTTGTTAGATCTAGTTAATGTTAAGTCTGAACTTGTGTTGTCTGAGGACGAACAGGACTGTGATTTCCTGCTTTTCAGCCGCTCATAACTTTTACTGCGTTTTTTATGGGGTAGTAACATATCAAAGTAACAGATTTCCCGCTACTTGTTTGAGAGGCATACTAGTTCTAATGCTATGATTTATTGTATATCCATCAAAGGAAGCAAATTTGGTATTGGAAACTTCAATTTATTTTTGCCTTCCAACCTCAGATACTACTTGGGCAAATATGGTGTTTTAGATCAGCAATAAGCCAAAGTCTTACGGAAAACTTTTCTAATTATTCTTCGCTTTTAACTGTATATATGTTTTAGCCCCACTTTTAAGAGCTATTAAGCGTGTTCATATTTTTGGAATCTCCTATTCAACCCTGTATTTGACTAAAATCTGGATCTTTTTTTTATTTAGAAAATTTTGCTGAGAAATTTTGCTGAGAGATTTTGATTTTTGGAATCTCCTATTCAACCCTGTATTTGACTAAAATATGTAGAATTTATAAAATCGACGAGTCTGTCCACATTACATTTGAGAAAATCCCAGTGTAGTTTTTGGGTAATAGAAATGTTTGGATGTTTTCCAGTTCTGGTAGCATTTTAGTGCCTTCTAGATGTGATTCTACAAGGAGCCAGATTGTTCCATTCCTTCTCTCATTTTCTTTTCCTTTTTACTCTCTCCTCTCCAACTGGTATACTACTAGCTTTCTGTACAAAAGAAAGGGTTGAGACCATGCTTCATTTATATATAATCCAATTGAACATATGTGCCGTTCTTGAAACTATTGTTGTTATTATCTTTTGGCACAGTTTGATGTATTAGTTGCAGCATTGCCTCTATCTGATGGAGGTGAAGAAGAGCAGTTGAAAAGGATTGCAGAACTACAGGTATAAGCCTTCTCATATGCTAATGTTGATATAACACCAAGAATTCCTGTATTGTTTAGTTCTCATTACGTTCGAAACTCGTTATCCAGGCCGAGAACGATGCTGTAGGTCAAGAACTTCAAAAGCAGCTAGAAGCAGCAGGTATTATCTTGTTTTCTTCGTTAACCTGTGTATAGTTACAACATGCCCAGTTGCAAATTATGGGCCCACCAAGAATGACTTCCTATTGGAAGTTTTACTGTATGGNAGTTGCAAATTATGGGCCCACCAAGAATGACTTCCTATTGGAAATTTTACTGTATGCNAGTTTTACTGTATGGTTTCATTTAGGGTTTGACCAACTCGTCGTAAGGGCGAAATTTCTCGTGTTCTCTCCATACTACTGATATTTCGCCACAGCTACACAAGCTAACATTCTTAATGGAATTGGGAATTGTTTGTTGCAGAGAAGGAATTAAAACAGGTTCAGGAGCTTTTCAGCCAAGTTGCAGATAATTGCTTGAACTTGAAGAAAGCAGACTGAAAGATCTCAAGGTTATAGTAGCTCAATCAAATGCATTCATTCCTTTCTTCCTAATTTAATGCAACTTAGAACAGGTGTGTTAATTTTCTGCGCCACTTTGTCCATTTTCTCATCGTTTTTTAAGCTCAACTCGGTAGAAGATTCATAATGCCTAACCCCAAATTGCCTCTCTCTAGCTTCTAGCGAATGTTCAAAGCTGTCATAGTAATTGCAAGTTAGCAATATATTATGTATTTGAAATTTTCGTAATTAATATATATAGCTTTCGTAGCTGATAATTTGTACCATTGTTTTACAAATATCGACTTATTTATATTTATAAGTGTCGGTTGACCTCATTTTTTTC

mRNA sequence

TTTCTGGACAATTCTTCTGGGGGATAAGGTTCGAAATGGACATTATTTCCCAACTACAGGAACAAGTCAATACAATTGCTGCTTTAGCTTTCAATACTTTTGGGACATTGCAGAGAGATGCTCCTCCAGTTCGTTTATCTCCTAATTACCCCGAACCTCCGCCTCACGAACCTACAGATGACAGTGCAAACTTCGTAGAGCAGCCCAAGCTAATGAGTGCCGCTTTGGTGAAAGCCGCTAAGCAGTTTGATGTATTAGTTGCAGCATTGCCTCTATCTGATGGAGGTGAAGAAGAGCAGTTGAAAAGGATTGCAGAACTACAGGCCGAGAACGATGCTGTAGGTCAAGAACTTCAAAAGCAGCTAGAAGCAGCAGAGAAGGAATTAAAACAGGTTCAGGAGCTTTTCAGCCAAGTTGCAGATAATTGCTTGAACTTGAAGAAAGCAGACTGAAAGATCTCAAGGTTATAGTAGCTCAATCAAATGCATTCATTCCTTTCTTCCTAATTTAATGCAACTTAGAACAGGTGTGTTAATTTTCTGCGCCACTTTGTCCATTTTCTCATCGTTTTTTAAGCTCAACTCGGTAGAAGATTCATAATGCCTAACCCCAAATTGCCTCTCTCTAGCTTCTAGCGAATGTTCAAAGCTGTCATAGTAATTGCAAGTTAGCAATATATTATGTATTTGAAATTTTCGTAATTAATATATATAGCTTTCGTAGCTGATAATTTGTACCATTGTTTTACAAATATCGACTTATTTATATTTATAAGTGTCGGTTGACCTCATTTTTTTC

Coding sequence (CDS)

ATGGACATTATTTCCCAACTACAGGAACAAGTCAATACAATTGCTGCTTTAGCTTTCAATACTTTTGGGACATTGCAGAGAGATGCTCCTCCAGTTCGTTTATCTCCTAATTACCCCGAACCTCCGCCTCACGAACCTACAGATGACAGTGCAAACTTCGTAGAGCAGCCCAAGCTAATGAGTGCCGCTTTGGTGAAAGCCGCTAAGCAGTTTGATGTATTAGTTGCAGCATTGCCTCTATCTGATGGAGGTGAAGAAGAGCAGTTGAAAAGGATTGCAGAACTACAGGCCGAGAACGATGCTGTAGGTCAAGAACTTCAAAAGCAGCTAGAAGCAGCAGAGAAGGAATTAAAACAGGTTCAGGAGCTTTTCAGCCAAGTTGCAGATAATTGCTTGAACTTGAAGAAAGCAGACTGA

Protein sequence

MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTDDSANFVEQPKLMSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD

Homology

[Close]

BLAST of Cp4.1LG05g05620 vs. Swiss-Prot
Match: MED21_ARATH (Mediator of RNA polymerase II transcription subunit 21 OS=Arabidopsis thaliana GN=MED21 PE=1 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 4.3e-52
Identity = 112/139 (80.58%), Postives = 119/139 (85.61%), Query Frame = 1


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEP-TDDSANFVEQPKL 60
           MDIISQLQEQVNTIAA+ FN FGTLQRDAPPV+LSPNYPEPP     TDD+  F EQPK 
Sbjct: 1   MDIISQLQEQVNTIAAITFNAFGTLQRDAPPVQLSPNYPEPPATTTVTDDATPFPEQPKQ 60

Query: 61  MSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQ 120
           +SA LVKAAKQFD LVAALPLS+GGE  QLKRIAELQ END VGQELQKQLEAAEKELKQ
Sbjct: 61  LSAGLVKAAKQFDALVAALPLSEGGEGAQLKRIAELQVENDLVGQELQKQLEAAEKELKQ 120

Query: 121 VQELFSQVADNCLNLKKAD 139
           VQELF Q ADNCLN+KK +
Sbjct: 121 VQELFGQAADNCLNMKKPE 139

[Close]

BLAST of Cp4.1LG05g05620 vs. TrEMBL
Match: A0A0A0KZ00_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G268030 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 6.7e-60
Identity = 127/138 (92.03%), Postives = 130/138 (94.20%), Query Frame = 1


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTDDSANFVEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPP  EPT+D+A   EQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLM 60

Query: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120
           SAALVKAAKQFD LVAALPLSDGGEEEQLKRIAELQAEND VGQELQKQL+AAEKEL QV
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEKELVQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELFSQVADNCLNLKKAD
Sbjct: 121 QELFSQVADNCLNLKKAD 138

[Close]

BLAST of Cp4.1LG05g05620 vs. TrEMBL
Match: K4B9R4_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 3.7e-58
Identity = 124/138 (89.86%), Postives = 127/138 (92.03%), Query Frame = 1


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTDDSANFVEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPP  PT+DSAN  EQPK M
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPANPTEDSANVAEQPKQM 60

Query: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120
           SAA VKAAKQFDVLVAALPLSDG EE QLKRIAELQAENDAVGQELQKQLEAAEKELKQV
Sbjct: 61  SAAFVKAAKQFDVLVAALPLSDGSEEAQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELF+Q  DNCLNLKK +
Sbjct: 121 QELFNQATDNCLNLKKPE 138

[Close]

BLAST of Cp4.1LG05g05620 vs. TrEMBL
Match: A0A0V0HDL0_SOLCH (Putative mediator of RNA polymerase II transcription subunit 21-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 6.2e-58
Identity = 123/138 (89.13%), Postives = 126/138 (91.30%), Query Frame = 1


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTDDSANFVEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPP  PT+DS N  EQPK M
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPANPTEDSTNVAEQPKQM 60

Query: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120
           SAA VKAAKQFD LVAALPLSDGGEE QLKRIAELQAENDAVGQELQKQLEAAEKELKQV
Sbjct: 61  SAAFVKAAKQFDALVAALPLSDGGEEAQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELF+Q  DNCLNLKK +
Sbjct: 121 QELFNQATDNCLNLKKPE 138

[Close]

BLAST of Cp4.1LG05g05620 vs. TrEMBL
Match: M1BD21_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400016459 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 6.2e-58
Identity = 123/138 (89.13%), Postives = 126/138 (91.30%), Query Frame = 1


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTDDSANFVEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPP  PT+DS N  EQPK M
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPANPTEDSTNVAEQPKQM 60

Query: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120
           SAA VKAAKQFD LVAALPLSDGGEE QLKRIAELQAENDAVGQELQKQLEAAEKELKQV
Sbjct: 61  SAAFVKAAKQFDALVAALPLSDGGEEAQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELF+Q  DNCLNLKK +
Sbjct: 121 QELFNQATDNCLNLKKPE 138

[Close]

BLAST of Cp4.1LG05g05620 vs. TrEMBL
Match: A0A0D2VBU8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G179800 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 2.4e-57
Identity = 123/138 (89.13%), Postives = 130/138 (94.20%), Query Frame = 1


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTDDSANFVEQPKLM 60
           MDIISQLQEQVN+IA+L FNTFGTLQRDAPPVRLSPNYPEPPP+ PT+DSANF +QPKLM
Sbjct: 1   MDIISQLQEQVNSIASLTFNTFGTLQRDAPPVRLSPNYPEPPPN-PTEDSANFADQPKLM 60

Query: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120
           SAALVKAAKQFD LVAALP S+GGEE QL+RIAELQAENDAVGQELQKQLEAAEKELKQV
Sbjct: 61  SAALVKAAKQFDALVAALPPSEGGEEAQLRRIAELQAENDAVGQELQKQLEAAEKELKQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELFSQ ADNCLNLKK D
Sbjct: 121 QELFSQAADNCLNLKKPD 137

[Close]

BLAST of Cp4.1LG05g05620 vs. TAIR10
Match: AT4G04780.1 (AT4G04780.1 mediator 21)

HSP 1 Score: 205.3 bits (521), Expect = 2.4e-53
Identity = 112/139 (80.58%), Postives = 119/139 (85.61%), Query Frame = 1


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEP-TDDSANFVEQPKL 60
           MDIISQLQEQVNTIAA+ FN FGTLQRDAPPV+LSPNYPEPP     TDD+  F EQPK 
Sbjct: 1   MDIISQLQEQVNTIAAITFNAFGTLQRDAPPVQLSPNYPEPPATTTVTDDATPFPEQPKQ 60

Query: 61  MSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQ 120
           +SA LVKAAKQFD LVAALPLS+GGE  QLKRIAELQ END VGQELQKQLEAAEKELKQ
Sbjct: 61  LSAGLVKAAKQFDALVAALPLSEGGEGAQLKRIAELQVENDLVGQELQKQLEAAEKELKQ 120

Query: 121 VQELFSQVADNCLNLKKAD 139
           VQELF Q ADNCLN+KK +
Sbjct: 121 VQELFGQAADNCLNMKKPE 139

[Close]

BLAST of Cp4.1LG05g05620 vs. NCBI nr
Match: gi|449463842|ref|XP_004149640.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 21 [Cucumis sativus])

HSP 1 Score: 238.0 bits (606), Expect = 9.6e-60
Identity = 127/138 (92.03%), Postives = 130/138 (94.20%), Query Frame = 1


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTDDSANFVEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPP  EPT+D+A   EQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLM 60

Query: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120
           SAALVKAAKQFD LVAALPLSDGGEEEQLKRIAELQAEND VGQELQKQL+AAEKEL QV
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEKELVQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELFSQVADNCLNLKKAD
Sbjct: 121 QELFSQVADNCLNLKKAD 138

[Close]

BLAST of Cp4.1LG05g05620 vs. NCBI nr
Match: gi|659097951|ref|XP_008449895.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 21 [Cucumis melo])

HSP 1 Score: 237.7 bits (605), Expect = 1.3e-59
Identity = 127/138 (92.03%), Postives = 130/138 (94.20%), Query Frame = 1


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTDDSANFVEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPP  EPT+DSA   EQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM 60

Query: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120
           SAALVKAAKQFD LVAALPLSDGGEEEQLKRIAELQAEND VGQELQKQL+AAE+EL QV
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELFSQVADNCLNLKKAD
Sbjct: 121 QELFSQVADNCLNLKKAD 138

[Close]

BLAST of Cp4.1LG05g05620 vs. NCBI nr
Match: gi|970005966|ref|XP_015063828.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 21 [Solanum pennellii])

HSP 1 Score: 233.0 bits (593), Expect = 3.1e-58
Identity = 124/138 (89.86%), Postives = 127/138 (92.03%), Query Frame = 1


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTDDSANFVEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPP  PT+DS N  EQPK M
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPANPTEDSTNVAEQPKQM 60

Query: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120
           SAA VKAAKQFDVLVAALPLSDGGEE QLKRIAELQAENDAVGQELQKQLEAAEKELKQV
Sbjct: 61  SAAFVKAAKQFDVLVAALPLSDGGEEAQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELF+Q  DNCLNLKK +
Sbjct: 121 QELFNQATDNCLNLKKPE 138

[Close]

BLAST of Cp4.1LG05g05620 vs. NCBI nr
Match: gi|723673903|ref|XP_010316594.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 21 isoform X1 [Solanum lycopersicum])

HSP 1 Score: 232.3 bits (591), Expect = 5.3e-58
Identity = 124/138 (89.86%), Postives = 127/138 (92.03%), Query Frame = 1


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTDDSANFVEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPP  PT+DSAN  EQPK M
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPANPTEDSANVAEQPKQM 60

Query: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120
           SAA VKAAKQFDVLVAALPLSDG EE QLKRIAELQAENDAVGQELQKQLEAAEKELKQV
Sbjct: 61  SAAFVKAAKQFDVLVAALPLSDGSEEAQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELF+Q  DNCLNLKK +
Sbjct: 121 QELFNQATDNCLNLKKPE 138

[Close]

BLAST of Cp4.1LG05g05620 vs. NCBI nr
Match: gi|698553696|ref|XP_009770008.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 21-like isoform X1 [Nicotiana sylvestris])

HSP 1 Score: 231.9 bits (590), Expect = 6.9e-58
Identity = 123/138 (89.13%), Postives = 127/138 (92.03%), Query Frame = 1


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTDDSANFVEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPP  PT+D+AN  EQPK M
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPANPTEDAANVAEQPKQM 60

Query: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120
           SAA VKAAKQFD LVAALPLSDGGEE QLKRIAELQAENDAVGQELQKQLEAAEKELKQV
Sbjct: 61  SAAFVKAAKQFDALVAALPLSDGGEEAQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELF+Q  DNCLNLKK +
Sbjct: 121 QELFNQATDNCLNLKKPE 138

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g05620 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MED21_ARATH	4.3e-52	80.58	Mediator of RNA polymerase II transcription subunit 21 OS=Arabidopsis thaliana G...	[more]

BLAST of Cp4.1LG05g05620 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZ00_CUCSA	6.7e-60	92.03	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G268030 PE=4 SV=1	[more]
K4B9R4_SOLLC	3.7e-58	89.86	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
A0A0V0HDL0_SOLCH	6.2e-58	89.13	Putative mediator of RNA polymerase II transcription subunit 21-like OS=Solanum ...	[more]
M1BD21_SOLTU	6.2e-58	89.13	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400016459 PE=4 SV=1	[more]
A0A0D2VBU8_GOSRA	2.4e-57	89.13	Uncharacterized protein OS=Gossypium raimondii GN=B456_010G179800 PE=4 SV=1	[more]

BLAST of Cp4.1LG05g05620 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G04780.1	2.4e-53	80.58	mediator 21	[more]

BLAST of Cp4.1LG05g05620 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449463842\|ref\|XP_004149640.1\|	9.6e-60	92.03	PREDICTED: mediator of RNA polymerase II transcription subunit 21 [Cucumis sativ...	[more]
gi\|659097951\|ref\|XP_008449895.1\|	1.3e-59	92.03	PREDICTED: mediator of RNA polymerase II transcription subunit 21 [Cucumis melo]	[more]
gi\|970005966\|ref\|XP_015063828.1\|	3.1e-58	89.86	PREDICTED: mediator of RNA polymerase II transcription subunit 21 [Solanum penne...	[more]
gi\|723673903\|ref\|XP_010316594.1\|	5.3e-58	89.86	PREDICTED: mediator of RNA polymerase II transcription subunit 21 isoform X1 [So...	[more]
gi\|698553696\|ref\|XP_009770008.1\|	6.9e-58	89.13	PREDICTED: mediator of RNA polymerase II transcription subunit 21-like isoform X...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021384	Mediator_Med21

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050832	defense response to fungus
biological_process	GO:0008150	biological_process
cellular_component	GO:0016592	mediator complex
cellular_component	GO:0043078	polar nucleus
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g05620.1	Cp4.1LG05g05620.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021384	Mediator complex, subunit Med21	PFAM	PF11221	Med21	coord: 1..128 score: 9.4
None	No IPR available	unknown	Coil	Coil	coord: 85..130 scor
None	No IPR available	PANTHER	PTHR13381	RNA POLYMERASE II HOLOENZYME COMPONENT SRB7	coord: 1..138 score: 2.6
None	No IPR available	unknown	SSF140718	Mediator hinge subcomplex-like	coord: 1..126 score: 5.23

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG05g05620	Cucsa.152690	Cucumber (Gy14) v1	cgycpeB0410
Cp4.1LG05g05620	CmaCh02G011630	Cucurbita maxima (Rimu)	cmacpeB646
Cp4.1LG05g05620	CmoCh02G011970	Cucurbita moschata (Rifu)	cmocpeB595
Cp4.1LG05g05620	Csa4G268030	Cucumber (Chinese Long) v2	cpecuB728
Cp4.1LG05g05620	MELO3C014729	Melon (DHL92) v3.5.1	cpemeB696
Cp4.1LG05g05620	CSPI04G12500	Wild cucumber (PI 183967)	cpecpiB730
Cp4.1LG05g05620	Lsi10G009150	Bottle gourd (USVL1VR-Ls)	cpelsiB598
Cp4.1LG05g05620	MELO3C014729.2	Melon (DHL92) v3.6.1	cpemedB829
Cp4.1LG05g05620	CsaV3_4G017560	Cucumber (Chinese Long) v3	cpecucB0906
Cp4.1LG05g05620	Bhi10G000403	Wax gourd	cpewgoB0944
Cp4.1LG05g05620	Carg13978	Silver-seed gourd	carcpeB0718

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG05g05620	Cucurbita pepo (Zucchini)	cpecpeB310
Cp4.1LG05g05620	Cucurbita maxima (Rimu)	cmacpeB586
Cp4.1LG05g05620	Cucurbita moschata (Rifu)	cmocpeB535
Cp4.1LG05g05620	Wild cucumber (PI 183967)	cpecpiB741
Cp4.1LG05g05620	Cucumber (Chinese Long) v2	cpecuB740
Cp4.1LG05g05620	Watermelon (Charleston Gray)	cpewcgB644
Cp4.1LG05g05620	Watermelon (97103) v1	cpewmB723
Cp4.1LG05g05620	Cucumber (Gy14) v2	cgybcpeB559
Cp4.1LG05g05620	Cucumber (Chinese Long) v3	cpecucB0919