Csa4G268030 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G268030
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Mediator of RNA polymerase II transcription subunit 21; contains IPR021384 (Mediator complex, subunit Med21)
Location	Chr4 : 10564037 .. 10566604 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTCGAAACATTTTGTGATTGACGACTTGACGTTCTAAAACTAGAAAATTAGGAAGGTATAAGGAAAAGAAGGAACCCTAATTCATCTGCTTTTTCTCCGACTCACGTTCAACCGCCCAGCCCCTTCCTTGTCTCCGGTAGCATCTCGATGACAGTCCTTTGAGATAAACGGCGGATCGTACTCTCACTCACTCAGTTTCTGGAACTGATTTGCTGATTAAAAGGAGCGATATGTGTATTATTTGCGGAATCATCTTCTGAACAATTCATCCTAGGGATAAGGTTGAAGATGGATATAATTTCCCAATTGCAGGAACAAGTTAACACAATTGCTGCTTTAGCTTTCAACACATTTGGGACATTGCAAAGAGATGCTCCTCCAGTTCGTTTATCCCCTAATTATCCCGAACCACCGTCTCAGGAGCCTACAGAGGATAATGCAACCATCGCAGAGCAGCCCAAGCTTATGAGTGCCGCTTTGGTGAAAGCTGCTAAGCAGGTGCGTATCATTTATTCTGCACTTTAATACTTCGGGGTGGAAAATATGAATGAGTTAGAGTACCTCTTGTTAATAAACTTTCCACGCATTGAAACATCAAGAAAAATATTTGCATTTTCCATTTGAGGAAATTCAGTGTCCTAGATTAACTTTACATGCATTCTGTCTAGTGTCTACTGGGTAAGTAGCCGAGAATGCAGTATCTACTTGAAGCACCCTTGTGTTGAGGTTGGAAGAGAAAGAAAAATCAAGGCAGCAGGTTTCATGCTACTTGTTTGAGATGAGTACATATTCTAATGCTATGATATATGATACAATCCACAAATTTGGTATTGAAAACTTCAGTCTATTTTTCCCATCTAACATCAAATACTACTGAGGTAGGTATGGCTATTCGATCGGCAATAAAACAAAGTACTATGGTTCTTTTTTTTTAGTTATCCTTTTACTTTTTAACTGCTTGTTATGTATATTTAGGCCCACTTTAAGGTGTTCTTTAAGTGTTGATATTTTGGAATCTGATACTCAAACCCTGTATTTGAGCAATTTTGCTGAGAGAGTTTTGATTTTCACAAGTTTCCATCGTCGAACTCAGCAATGCATTTAGGTTTGTTCTTCCGAATAATCTTTTAAGGATTATATAGAATTATAAAATAGACTGATTCTGTCCACGTTAAGTTTGAAAATCTCAGTGTGATAGTATTAAGTAATAGAAACGTACAAAGTTTTCCAACTCTGCTGGACTTTTAATGACTTCTAGATGTGATTCTACAACGAGTTAGATTTGTTCTATATATTCTCTCATTTTCTGTATTTTTTACGTTTACCTCTTGATTGGTATGTTATTTTATTAGTTTTTTGAGGAGTTGCAAGGAGCCAACTGAGGAATTTCTCCTCCATCCACTTTTCTCTCTCGGAGAAATGGCTGTTTTCATAGTAGGTTGGAGTATATGCTAATTTGTGGGGTTTGGGGTGCGAGAGAAATGATAGAATCTTCAAGGGAGAAATAACCGAATCTTGGATCTTGAAGATTCGTTTTTAATAATTAATCGCTTAGTCACATTTCACTTGATTGGAGCCCTTCCCCTTCTTATAGTTAGCTACACTTTCTGTGAACACCATTCTGTATGGTTATGTATTCTTTCACCTTGTTTTTCAACAAAAGTCTAGTTGTACATCAAAAACAAAATTTATCAGCATTTTGAACAAAAGAAAGGGATGGGATCTTGCTTCATTTATTTGCAATTATCCAATTGAACATGTGTACCTTTTCTTAAAAAAATTATTGTCAATATTTTCTAGCACAGTTTGATGCATTGGTTGCAGCATTGCCTCTATCTGATGGAGGTGAAGAAGAGCAGTTGAAAAGGATTGCAGAACTACAGGTATGAATTCTCATATTCTGATGTTGATATAAGATCAAGAGTTGTTGTGTTGTTTACTTCTCTCAGTATGTATTTCAGGCTGAGAACGATGTTGTAGGTCAAGAACTTCAAAAACAGCTACAAGCAGCAGGTGTTATCTCTGTCTTCTTGTTAATCTCTACATTTTCAAACCGTGCCCCGGTGTGGTTACATAAGACTGATGTTGTTTGGCTGGCGACTTACTTTAGTTGAAATAATTCTATTTAATAATTTTAGCCCTAAATGTAAATTTCTCATGTTCACTTCATTCTATTGAACATAAGGATATTTTGCGCAACTAACAATCTTACCCAAACTGTGTTTCAGAGAAAGAATTAGTACAAGTTCAGGAGCTGTTCAGCCAAGTGGCAGATAATTGCTTGAACTTAAAGAAAGCAGATTGAAAGAGTGGGGGAATTTTCCTATGCTACCAATGTATGGAAATTTTCCGTATCTCCCCGTGCATTTCTGCCGCATGACTTTTTATTTTTATATTACATATATGTAGAAATATACGTGAATCTACAGTTTATGGAATAAAAATACTTTTATCCATTGTATTAATTTTTTTTTATGACGGATTGATATTTTCATCAATATTTCTACGTTTTCAAAACGGTTTTGATATTAATATGAGGAGTGAATGGATATTTTCTGTTAGATT

mRNA sequence

ATGGATATAATTTCCCAATTGCAGGAACAAGTTAACACAATTGCTGCTTTAGCTTTCAACACATTTGGGACATTGCAAAGAGATGCTCCTCCAGTTCGTTTATCCCCTAATTATCCCGAACCACCGTCTCAGGAGCCTACAGAGGATAATGCAACCATCGCAGAGCAGCCCAAGCTTATGAGTGCCGCTTTGGTGAAAGCTGCTAAGCAGTTTGATGCATTGGTTGCAGCATTGCCTCTATCTGATGGAGGTGAAGAAGAGCAGTTGAAAAGGATTGCAGAACTACAGGCTGAGAACGATGTTGTAGGTCAAGAACTTCAAAAACAGCTACAAGCAGCAGAGAAAGAATTAGTACAAGTTCAGGAGCTGTTCAGCCAAGTGGCAGATAATTGCTTGAACTTAAAGAAAGCAGATTGA

Coding sequence (CDS)

ATGGATATAATTTCCCAATTGCAGGAACAAGTTAACACAATTGCTGCTTTAGCTTTCAACACATTTGGGACATTGCAAAGAGATGCTCCTCCAGTTCGTTTATCCCCTAATTATCCCGAACCACCGTCTCAGGAGCCTACAGAGGATAATGCAACCATCGCAGAGCAGCCCAAGCTTATGAGTGCCGCTTTGGTGAAAGCTGCTAAGCAGTTTGATGCATTGGTTGCAGCATTGCCTCTATCTGATGGAGGTGAAGAAGAGCAGTTGAAAAGGATTGCAGAACTACAGGCTGAGAACGATGTTGTAGGTCAAGAACTTCAAAAACAGCTACAAGCAGCAGAGAAAGAATTAGTACAAGTTCAGGAGCTGTTCAGCCAAGTGGCAGATAATTGCTTGAACTTAAAGAAAGCAGATTGA

Protein sequence

MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD*

Homology

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BLAST of Csa4G268030 vs. Swiss-Prot
Match: MED21_ARATH (Mediator of RNA polymerase II transcription subunit 21 OS=Arabidopsis thaliana GN=MED21 PE=1 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.1e-54
Identity = 110/139 (79.14%), Postives = 118/139 (84.89%), Query Frame = 1


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNAT-IAEQPKL 60
           MDIISQLQEQVNTIAA+ FN FGTLQRDAPPV+LSPNYPEPP+     D+AT   EQPK 
Sbjct: 1   MDIISQLQEQVNTIAAITFNAFGTLQRDAPPVQLSPNYPEPPATTTVTDDATPFPEQPKQ 60

Query: 61  MSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEKELVQ 120
           +SA LVKAAKQFDALVAALPLS+GGE  QLKRIAELQ END+VGQELQKQL+AAEKEL Q
Sbjct: 61  LSAGLVKAAKQFDALVAALPLSEGGEGAQLKRIAELQVENDLVGQELQKQLEAAEKELKQ 120

Query: 121 VQELFSQVADNCLNLKKAD 139
           VQELF Q ADNCLN+KK +
Sbjct: 121 VQELFGQAADNCLNMKKPE 139

[Close]

BLAST of Csa4G268030 vs. Swiss-Prot
Match: MED21_DANRE (Mediator of RNA polymerase II transcription subunit 21 OS=Danio rerio GN=med21 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.5e-07
Identity = 38/139 (27.34%), Postives = 65/139 (46.76%), Query Frame = 1


Query: 2   DIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSP-----NYPEPPSQEPTEDNATIAEQ 61
           D ++QLQ+ VN++A    N  G LQ+ APP   S      N  +P +  PTE+ A     
Sbjct: 3   DRLTQLQDAVNSLADQFCNAIGVLQQCAPPASFSNIQTAINKDQPSN--PTEEYA----- 62

Query: 62  PKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEKE 121
            +L +A + + AK  D L+ +LP  +     Q   + +L+ EN      L++ +   +  
Sbjct: 63  -QLFAALIARTAKDVDVLIDSLPSEESTAALQAASLRQLEEENQEAAARLEEVVYRGDAL 122

Query: 122 LVQVQELFSQVADNCLNLK 136
           L ++Q   + +A + L  +
Sbjct: 123 LEKIQTALADIAQSQLRTR 133

[Close]

BLAST of Csa4G268030 vs. Swiss-Prot
Match: MED21_ANOGA (Mediator of RNA polymerase II transcription subunit 21 OS=Anopheles gambiae GN=MED21 PE=3 SV=5)

HSP 1 Score: 54.3 bits (129), Expect = 1.2e-06
Identity = 38/149 (25.50%), Postives = 69/149 (46.31%), Query Frame = 1


Query: 2   DIISQLQEQVNTIAALAFNTFGTLQRDAPPV------RLSPNYPE---------PPSQEP 61
           D ++QLQ+ VN  A    N+ G LQ+ + P       R     P+         P  Q+ 
Sbjct: 3   DRLTQLQDTVNQQAEHFCNSIGILQQCSVPSKFAGFERTGSQTPQQQVHQQQQLPQQQQQ 62

Query: 62  TEDNATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQEL 121
            +      + P+L S  + + AK  D L+ +LP  +   E Q++ +  L+AEN    ++L
Sbjct: 63  QQQPQQQEDFPQLFSTLISRCAKDIDTLIESLPSEESSIELQVQSLQRLEAENKESAEKL 122

Query: 122 QKQLQAAEKELVQVQELFSQVADNCLNLK 136
           ++ ++  E  L ++Q   S +A + L+++
Sbjct: 123 EEIVRKGELLLEKIQAALSDIAQSQLDMQ 151

[Close]

BLAST of Csa4G268030 vs. Swiss-Prot
Match: MED21_BOVIN (Mediator of RNA polymerase II transcription subunit 21 OS=Bos taurus GN=MED21 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.6e-06
Identity = 36/139 (25.90%), Postives = 65/139 (46.76%), Query Frame = 1


Query: 2   DIISQLQEQVNTIAALAFNTFGTLQRDAPP-----VRLSPNYPEPPSQEPTEDNATIAEQ 61
           D ++QLQ+ VN++A    N  G LQ+  PP     ++ + N  +P +  PTE+ A     
Sbjct: 3   DRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFSNIQTAINKDQPAN--PTEEYA----- 62

Query: 62  PKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEKE 121
            +L +A + + AK  D L+ +LP  +     Q   + +L+ EN      L+  +   +  
Sbjct: 63  -QLFAALIARTAKDIDVLIDSLPSEESTAALQAASLYKLEEENHEAATSLEDVVYRGDML 122

Query: 122 LVQVQELFSQVADNCLNLK 136
           L ++Q   + +A + L  +
Sbjct: 123 LEKIQSALADIAQSQLKTR 133

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BLAST of Csa4G268030 vs. TrEMBL
Match: A0A0A0KZ00_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G268030 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 1.4e-68
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 1


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEKELVQV 120
           SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEKELVQV
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEKELVQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELFSQVADNCLNLKKAD
Sbjct: 121 QELFSQVADNCLNLKKAD 138

[Close]

BLAST of Csa4G268030 vs. TrEMBL
Match: M1BD21_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400016459 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 2.6e-59
Identity = 120/138 (86.96%), Postives = 125/138 (90.58%), Query Frame = 1


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPP   PTED+  +AEQPK M
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPANPTEDSTNVAEQPKQM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEKELVQV 120
           SAA VKAAKQFDALVAALPLSDGGEE QLKRIAELQAEND VGQELQKQL+AAEKEL QV
Sbjct: 61  SAAFVKAAKQFDALVAALPLSDGGEEAQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELF+Q  DNCLNLKK +
Sbjct: 121 QELFNQATDNCLNLKKPE 138

[Close]

BLAST of Csa4G268030 vs. TrEMBL
Match: A0A0V0HDL0_SOLCH (Putative mediator of RNA polymerase II transcription subunit 21-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 2.6e-59
Identity = 120/138 (86.96%), Postives = 125/138 (90.58%), Query Frame = 1


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPP   PTED+  +AEQPK M
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPANPTEDSTNVAEQPKQM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEKELVQV 120
           SAA VKAAKQFDALVAALPLSDGGEE QLKRIAELQAEND VGQELQKQL+AAEKEL QV
Sbjct: 61  SAAFVKAAKQFDALVAALPLSDGGEEAQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELF+Q  DNCLNLKK +
Sbjct: 121 QELFNQATDNCLNLKKPE 138

[Close]

BLAST of Csa4G268030 vs. TrEMBL
Match: K4B9R4_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.3e-58
Identity = 119/138 (86.23%), Postives = 124/138 (89.86%), Query Frame = 1


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPP   PTED+A +AEQPK M
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPANPTEDSANVAEQPKQM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEKELVQV 120
           SAA VKAAKQFD LVAALPLSDG EE QLKRIAELQAEND VGQELQKQL+AAEKEL QV
Sbjct: 61  SAAFVKAAKQFDVLVAALPLSDGSEEAQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELF+Q  DNCLNLKK +
Sbjct: 121 QELFNQATDNCLNLKKPE 138

[Close]

BLAST of Csa4G268030 vs. TrEMBL
Match: A0A0S2LKQ9_REHGL (Mediator of RNA polymerase II transcription subunit 21 OS=Rehmannia glutinosa GN=Med21 PE=2 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 1.8e-57
Identity = 119/139 (85.61%), Postives = 127/139 (91.37%), Query Frame = 1


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQ-EPTEDNATIAEQPKL 60
           MDIISQLQEQVNTIAA+AFNTFG+LQRDAPPV+LSPNYPEPP+   P ED A +AEQPKL
Sbjct: 1   MDIISQLQEQVNTIAAIAFNTFGSLQRDAPPVQLSPNYPEPPANGNPVEDAANLAEQPKL 60

Query: 61  MSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEKELVQ 120
           +SA LVKAAKQFDALVAALPLS+GGEE QLKRIAELQAEND VGQELQKQL+AAEKEL Q
Sbjct: 61  LSAELVKAAKQFDALVAALPLSEGGEEAQLKRIAELQAENDAVGQELQKQLEAAEKELRQ 120

Query: 121 VQELFSQVADNCLNLKKAD 139
           VQELFSQ ADNCLNLKK D
Sbjct: 121 VQELFSQAADNCLNLKKPD 139

[Close]

BLAST of Csa4G268030 vs. TAIR10
Match: AT4G04780.1 (AT4G04780.1 mediator 21)

HSP 1 Score: 213.0 bits (541), Expect = 1.2e-55
Identity = 110/139 (79.14%), Postives = 118/139 (84.89%), Query Frame = 1


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNAT-IAEQPKL 60
           MDIISQLQEQVNTIAA+ FN FGTLQRDAPPV+LSPNYPEPP+     D+AT   EQPK 
Sbjct: 1   MDIISQLQEQVNTIAAITFNAFGTLQRDAPPVQLSPNYPEPPATTTVTDDATPFPEQPKQ 60

Query: 61  MSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEKELVQ 120
           +SA LVKAAKQFDALVAALPLS+GGE  QLKRIAELQ END+VGQELQKQL+AAEKEL Q
Sbjct: 61  LSAGLVKAAKQFDALVAALPLSEGGEGAQLKRIAELQVENDLVGQELQKQLEAAEKELKQ 120

Query: 121 VQELFSQVADNCLNLKKAD 139
           VQELF Q ADNCLN+KK +
Sbjct: 121 VQELFGQAADNCLNMKKPE 139

[Close]

BLAST of Csa4G268030 vs. NCBI nr
Match: gi|449463842|ref|XP_004149640.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 21 [Cucumis sativus])

HSP 1 Score: 266.9 bits (681), Expect = 1.9e-68
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 1


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEKELVQV 120
           SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEKELVQV
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEKELVQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELFSQVADNCLNLKKAD
Sbjct: 121 QELFSQVADNCLNLKKAD 138

[Close]

BLAST of Csa4G268030 vs. NCBI nr
Match: gi|659097951|ref|XP_008449895.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 21 [Cucumis melo])

HSP 1 Score: 263.5 bits (672), Expect = 2.1e-67
Identity = 136/138 (98.55%), Postives = 138/138 (100.00%), Query Frame = 1


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTED+ATIAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEKELVQV 120
           SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAE+ELVQV
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELFSQVADNCLNLKKAD
Sbjct: 121 QELFSQVADNCLNLKKAD 138

[Close]

BLAST of Csa4G268030 vs. NCBI nr
Match: gi|698553696|ref|XP_009770008.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 21-like isoform X1 [Nicotiana sylvestris])

HSP 1 Score: 236.5 bits (602), Expect = 2.8e-59
Identity = 121/138 (87.68%), Postives = 125/138 (90.58%), Query Frame = 1


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPP   PTED A +AEQPK M
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPANPTEDAANVAEQPKQM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEKELVQV 120
           SAA VKAAKQFDALVAALPLSDGGEE QLKRIAELQAEND VGQELQKQL+AAEKEL QV
Sbjct: 61  SAAFVKAAKQFDALVAALPLSDGGEEAQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELF+Q  DNCLNLKK +
Sbjct: 121 QELFNQATDNCLNLKKPE 138

[Close]

BLAST of Csa4G268030 vs. NCBI nr
Match: gi|565362742|ref|XP_006348104.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 21 [Solanum tuberosum])

HSP 1 Score: 236.1 bits (601), Expect = 3.7e-59
Identity = 120/138 (86.96%), Postives = 125/138 (90.58%), Query Frame = 1


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPP   PTED+  +AEQPK M
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPANPTEDSTNVAEQPKQM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEKELVQV 120
           SAA VKAAKQFDALVAALPLSDGGEE QLKRIAELQAEND VGQELQKQL+AAEKEL QV
Sbjct: 61  SAAFVKAAKQFDALVAALPLSDGGEEAQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELF+Q  DNCLNLKK +
Sbjct: 121 QELFNQATDNCLNLKKPE 138

[Close]

BLAST of Csa4G268030 vs. NCBI nr
Match: gi|970005966|ref|XP_015063828.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 21 [Solanum pennellii])

HSP 1 Score: 234.6 bits (597), Expect = 1.1e-58
Identity = 119/138 (86.23%), Postives = 124/138 (89.86%), Query Frame = 1


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPP   PTED+  +AEQPK M
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPANPTEDSTNVAEQPKQM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEKELVQV 120
           SAA VKAAKQFD LVAALPLSDGGEE QLKRIAELQAEND VGQELQKQL+AAEKEL QV
Sbjct: 61  SAAFVKAAKQFDVLVAALPLSDGGEEAQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELF+Q  DNCLNLKK +
Sbjct: 121 QELFNQATDNCLNLKKPE 138

The following BLAST results are available for this feature:

BLAST of Csa4G268030 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MED21_ARATH	2.1e-54	79.14	Mediator of RNA polymerase II transcription subunit 21 OS=Arabidopsis thaliana G...	[more]
MED21_DANRE	5.5e-07	27.34	Mediator of RNA polymerase II transcription subunit 21 OS=Danio rerio GN=med21 P...	[more]
MED21_ANOGA	1.2e-06	25.50	Mediator of RNA polymerase II transcription subunit 21 OS=Anopheles gambiae GN=M...	[more]
MED21_BOVIN	3.6e-06	25.90	Mediator of RNA polymerase II transcription subunit 21 OS=Bos taurus GN=MED21 PE...	[more]

BLAST of Csa4G268030 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZ00_CUCSA	1.4e-68	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G268030 PE=4 SV=1	[more]
M1BD21_SOLTU	2.6e-59	86.96	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400016459 PE=4 SV=1	[more]
A0A0V0HDL0_SOLCH	2.6e-59	86.96	Putative mediator of RNA polymerase II transcription subunit 21-like OS=Solanum ...	[more]
K4B9R4_SOLLC	1.3e-58	86.23	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
A0A0S2LKQ9_REHGL	1.8e-57	85.61	Mediator of RNA polymerase II transcription subunit 21 OS=Rehmannia glutinosa GN...	[more]

BLAST of Csa4G268030 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G04780.1	1.2e-55	79.14	mediator 21	[more]

BLAST of Csa4G268030 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449463842\|ref\|XP_004149640.1\|	1.9e-68	100.00	PREDICTED: mediator of RNA polymerase II transcription subunit 21 [Cucumis sativ...	[more]
gi\|659097951\|ref\|XP_008449895.1\|	2.1e-67	98.55	PREDICTED: mediator of RNA polymerase II transcription subunit 21 [Cucumis melo]	[more]
gi\|698553696\|ref\|XP_009770008.1\|	2.8e-59	87.68	PREDICTED: mediator of RNA polymerase II transcription subunit 21-like isoform X...	[more]
gi\|565362742\|ref\|XP_006348104.1\|	3.7e-59	86.96	PREDICTED: mediator of RNA polymerase II transcription subunit 21 [Solanum tuber...	[more]
gi\|970005966\|ref\|XP_015063828.1\|	1.1e-58	86.23	PREDICTED: mediator of RNA polymerase II transcription subunit 21 [Solanum penne...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021384	Mediator_Med21

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050832	defense response to fungus
biological_process	GO:0008150	biological_process
cellular_component	GO:0016592	mediator complex
cellular_component	GO:0043078	polar nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU084918	cucumber EST collection version 3.0	transcribed_cluster
CU092664	cucumber EST collection version 3.0	transcribed_cluster
CU098360	cucumber EST collection version 3.0	transcribed_cluster
CU125924	cucumber EST collection version 3.0	transcribed_cluster
CU160514	cucumber EST collection version 3.0	transcribed_cluster
CU164523	cucumber EST collection version 3.0	transcribed_cluster
CU168782	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G268030.1	Csa4G268030.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU098360	CU098360	transcribed_cluster
CU125924	CU125924	transcribed_cluster
CU164523	CU164523	transcribed_cluster
CU084918	CU084918	transcribed_cluster
CU160514	CU160514	transcribed_cluster
CU168782	CU168782	transcribed_cluster
CU092664	CU092664	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021384	Mediator complex, subunit Med21	PFAM	PF11221	Med21	coord: 1..128 score: 1.4
None	No IPR available	unknown	Coil	Coil	coord: 92..130 scor
None	No IPR available	PANTHER	PTHR13381	RNA POLYMERASE II HOLOENZYME COMPONENT SRB7	coord: 1..138 score: 3.9
None	No IPR available	unknown	SSF140718	Mediator hinge subcomplex-like	coord: 1..126 score: 6.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa4G268030	Cla003123	Watermelon (97103) v1	cuwmB347
Csa4G268030	MELO3C014729	Melon (DHL92) v3.5.1	cumeB295
Csa4G268030	ClCG02G024420	Watermelon (Charleston Gray)	cuwcgB292
Csa4G268030	Lsi10G009150	Bottle gourd (USVL1VR-Ls)	culsiB246
Csa4G268030	MELO3C014729.2	Melon (DHL92) v3.6.1	cumedB279
Csa4G268030	Cla97C02G050680	Watermelon (97103) v2	cuwmbB287
Csa4G268030	CSPI04G12500	Wild cucumber (PI 183967)	cpicuB181
Csa4G268030	Cucsa.152690	Cucumber (Gy14) v1	cgycuB220
Csa4G268030	CmaCh02G011630	Cucurbita maxima (Rimu)	cmacuB605
Csa4G268030	CmoCh02G011970	Cucurbita moschata (Rifu)	cmocuB596
Csa4G268030	Cp4.1LG05g05620	Cucurbita pepo (Zucchini)	cpecuB728
Csa4G268030	CsGy4G011750	Cucumber (Gy14) v2	cgybcuB174
Csa4G268030	Carg13978	Silver-seed gourd	carcuB0535

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G268030	Wax gourd	cuwgoB390
Csa4G268030	Cucurbita maxima (Rimu)	cmacuB549
Csa4G268030	Cucurbita moschata (Rifu)	cmocuB538
Csa4G268030	Cucurbita pepo (Zucchini)	cpecuB278
Csa4G268030	Cucumber (Gy14) v2	cgybcuB168