MELO3C014729.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C014729.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionMediator of RNA polymerase II transcription subunit 21
Locationchr05 : 117752 .. 120489 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTGCAAGGTCAACTTGCATAAATTTTGTTTAGTGGAACAATCATTGGAATAGAAAATGTGAAACACCAATTTTAGAAAAAAGAAATTTTGGAAGCAGCTGAAAGATGACAATAACTATTCAGCATCCACTTGTGACTGATGTTCTAAAACTAAAATATTAGGAAGGTATAAGGAAAAGGACAGAAAAGAAGGAACCCTAATTCATCTGCTTCTTCTCCGTCTCACGTTCAACCGCCCAGCCCCTTCCTTGCCTCTCCGGTAGTATCTCGATGACAGTCCTTTGAGATTAGCGGCGGATCGTACTCTCACTCACTCAGTTTCTGGAAGTGATTTGCTGATTAAACGGAGCAATATGTGTATTATTTGCGGAATCATCTTCTGAATTCTTCCTAGGGATAAGGTTGAAGATGGACATAATTTCCCAATTGCAGGAACAAGTTAACACAATTGCTGCTTTAGCTTTCAACACATTTGGGACATTGCAGAGAGACGCTCCTCCAGTTCGTTTATCCCCTAATTACCCCGAACCACCGTCTCAGGAGCCTACAGAGGATAGTGCAACCATCGCAGAGCAGCCCAAGCTTATGAGTGCCGCTTTGGTGAAAGCTGCCAAGCAGGTGCGAATCGTTTATTCTTTACCTTAATACTTCGGGGTGGAAAATATGAATGTGTGATGCATGTTGATGTACCTCTTGTTAATAACTTTTTCACGCATTGAAACCTCAAGAAACATATTTGCATTTTCCATTTGGGGAAATTCAGTATCCTAGATTAACCTTACATGCATTCTCTCTACTGGGTAAGTAGCCGAGAATGCAGTATCTACTTGAATCACCCTTGTGCTGAGGTTGGAAGAGAGAAAAAAAATCAAGGCAGCAGATTTCCTGCTACTTGTTTGAGATGAGTACATATTCTAATGCTATGATATATGATACAATCCACAAATTTGGTATCAAAAACTTCAGTCTATTTTTGCCATCCAACATCAAATACTACTTAGGTAGGTATGGCTACTCGGTCGGCAATAAAACAAACTACTATGGTTCTTTTTCTTAGTTATCCTTTTCTTTTTAATTGCTTGTTATGTACATTTGGGCCCACTTTAAGGTGTTCTTTAAGTGTTGATATTTTGGAATCTGATACCCAAACCCTGTATTTGAGCAATTTTGCTGAGCGAGTTTTGATTTTCACAAGTTTTCATCGTCGAACTTAGCAATGCATTAAGGTTTGTTCTTTTCAATAATTAGCAATGCATTAAGGTTTGTTCTTTCCAATAATCTTTCAAGGATTATATAGAGTTTATAAAATGCACTGATTCTGTCCACGTTAAGTTTGAAAATCCCAGTGCGATAGTATTAAGTAATAGGAACATACAAATTTTTCCAATTCTGTTGGACTTTTAATGTCTTCTAGATGTGATTCTACAACGAGTTAGATTTGTTCTATACATTCTCTCATTTTCTGTCTTTTTTACGTTTACCTCTTGATTGGTATGTTATTTTATTAGCTTTTTAAGGAGTTGCAAGGAGTCAACTGAGGAATTCTCCTCCCTCCACTTTTTTCTTTGGGAGAAAAGGTTGTTTTCGTAGTAGGTTGAAGTATGTGCTACTTTGTGGGGTTTGGGGTGCGAGAAATGATTGGATCTTCGAGGGAGAAATAATCGAATCTTGGATCTTGAAGATTCATTTTTCAGAATTAATCGCTGAGTCATATTTCACTTGATTGGAGCCCTTCCCCTTCTTATAGTTAGCTACACTTTTTGTGAACACCATTCTGTATGTTCATGTATTATTTCACCTTGTTTTTCAACAAAAGTCTAGTTGTACGTCAATAACAAAATTTATCAGCATTTTGAACGAAAGAAAGGGATGGGATCTTGCTTCATTTATTTGCAATTATTCAATTGAACGTGTGTACTTCTTAAAAGAAATTATTGTCAATATTTTCTAGCACAGTTTGATGCACTGGTTGCAGCATTGCCTCTATCTGATGGAGGTGAAGAAGAGCAATTGAAAAGGATTGCAGAACTACAGGTATGAATTCTCATATTCTGATGTTGATATAAGATCAAGAGTTGTGTTGTTTACTTCTCAGTATGTATTTCAGGCTGAGAACGATGTTGTAGGTCAAGAACTTCAAAAGCAGCTACAAGCAGCAGGTGTTACCTCCGTCTTCTTGTTAATCTTTATATTTTCAAGCAGCAGTTGACTGATGTTTGGCTGGCGACTTACATCAGTTGAAATAACTCTATTTAATAATTTTAGCCCTAAATGTAAATTTCTCATGTTCACTTCATTCTATTGAACATACGGATATTTTGCCCCATCTACACAACTAACAATCTTTACCGAAACTGTGTTGCAGAGCAAGAATTAGTACAAGTTCAGGAGCTGTTCAGCCAAGTAGCAGATAATTGCTTGAACTTAAAGAAAGCAGATTGAAAGAGTGGGGGAACTTTCCTATGCTACCAATGTATGGAAACTTTCCGCCTTCATTTCTGCCACATGACTCTTTGTTTTTATATTACATATATGTAGAAATATACGTGATTCTACAGTTTATGGAAGAAAAATAATTTTGTCCATTGTATTAATTTTTTTACTGACATTGATATTTTCATCGATATTTCTAAGTTTTCAAATGACTTTGATATCATCACGAGGAGCGAATGGATATTTTCATTATATTGTAAACAACTAGGAAAAAAAGGCTAAATTATAAAAAATGTTCCTTTAC

mRNA sequence

GTTTGCAAGGTCAACTTGCATAAATTTTGTTTAGTGGAACAATCATTGGAATAGAAAATGTGAAACACCAATTTTAGAAAAAAGAAATTTTGGAAGCAGCTGAAAGATGACAATAACTATTCAGCATCCACTTGTGACTGATGTTCTAAAACTAAAATATTAGGAAGGTATAAGGAAAAGGACAGAAAAGAAGGAACCCTAATTCATCTGCTTCTTCTCCGTCTCACGTTCAACCGCCCAGCCCCTTCCTTGCCTCTCCGGTAGTATCTCGATGACAGTCCTTTGAGATTAGCGGCGGATCGTACTCTCACTCACTCAGTTTCTGGAAGTGATTTGCTGATTAAACGGAGCAATATGTGTATTATTTGCGGAATCATCTTCTGAATTCTTCCTAGGGATAAGGTTGAAGATGGACATAATTTCCCAATTGCAGGAACAAGTTAACACAATTGCTGCTTTAGCTTTCAACACATTTGGGACATTGCAGAGAGACGCTCCTCCAGTTCGTTTATCCCCTAATTACCCCGAACCACCGTCTCAGGAGCCTACAGAGGATAGTGCAACCATCGCAGAGCAGCCCAAGCTTATGAGTGCCGCTTTGGTGAAAGCTGCCAAGCAGTTTGATGCACTGGTTGCAGCATTGCCTCTATCTGATGGAGGTGAAGAAGAGCAATTGAAAAGGATTGCAGAACTACAGGCTGAGAACGATGTTGTAGGTCAAGAACTTCAAAAGCAGCTACAAGCAGCAGAGCAAGAATTAGTACAAGTTCAGGAGCTGTTCAGCCAAGTAGCAGATAATTGCTTGAACTTAAAGAAAGCAGATTGAAAGAGTGGGGGAACTTTCCTATGCTACCAATGTATGGAAACTTTCCGCCTTCATTTCTGCCACATGACTCTTTGTTTTTATATTACATATATGTAGAAATATACGTGATTCTACAGTTTATGGAAGAAAAATAATTTTGTCCATTGTATTAATTTTTTTACTGACATTGATATTTTCATCGATATTTCTAAGTTTTCAAATGACTTTGATATCATCACGAGGAGCGAATGGATATTTTCATTATATTGTAAACAACTAGGAAAAAAAGGCTAAATTATAAAAAATGTTCCTTTAC

Coding sequence (CDS)

ATGGACATAATTTCCCAATTGCAGGAACAAGTTAACACAATTGCTGCTTTAGCTTTCAACACATTTGGGACATTGCAGAGAGACGCTCCTCCAGTTCGTTTATCCCCTAATTACCCCGAACCACCGTCTCAGGAGCCTACAGAGGATAGTGCAACCATCGCAGAGCAGCCCAAGCTTATGAGTGCCGCTTTGGTGAAAGCTGCCAAGCAGTTTGATGCACTGGTTGCAGCATTGCCTCTATCTGATGGAGGTGAAGAAGAGCAATTGAAAAGGATTGCAGAACTACAGGCTGAGAACGATGTTGTAGGTCAAGAACTTCAAAAGCAGCTACAAGCAGCAGAGCAAGAATTAGTACAAGTTCAGGAGCTGTTCAGCCAAGTAGCAGATAATTGCTTGAACTTAAAGAAAGCAGATTGA

Protein sequence

MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQVQELFSQVADNCLNLKKAD
Homology
[Close]
BLAST of MELO3C014729.2 vs. NCBI nr
Match: XP_008449895.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 21 [Cucumis melo])

HSP 1 Score: 254.6 bits (649), Expect = 1.9e-64
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0 

Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV 120
           SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELFSQVADNCLNLKKAD
Sbjct: 121 QELFSQVADNCLNLKKAD 138

[Close]
BLAST of MELO3C014729.2 vs. NCBI nr
Match: XP_004149640.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 21 [Cucumis sativus] >KGN54019.1 hypothetical protein Csa_4G268030 [Cucumis sativus])

HSP 1 Score: 251.9 bits (642), Expect = 1.2e-63
Identity = 136/138 (98.55%), Postives = 138/138 (100.00%), Query Frame = 0 

Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTED+ATIAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV 120
           SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAE+ELVQV
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEKELVQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELFSQVADNCLNLKKAD
Sbjct: 121 QELFSQVADNCLNLKKAD 138

[Close]
BLAST of MELO3C014729.2 vs. NCBI nr
Match: XP_022153730.1 (mediator of RNA polymerase II transcription subunit 21 [Momordica charantia])

HSP 1 Score: 241.5 bits (615), Expect = 1.7e-60
Identity = 131/138 (94.93%), Postives = 133/138 (96.38%), Query Frame = 0 

Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLS NYPEPPSQEPTEDSA IAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSSNYPEPPSQEPTEDSANIAEQPKLM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV 120
           SAALVKAAKQFD LVAALPLSDGGEEEQLKRIAELQAEND VGQELQKQL+AAE+EL QV
Sbjct: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELFSQVADNCLNLKKAD
Sbjct: 121 QELFSQVADNCLNLKKAD 138

[Close]
BLAST of MELO3C014729.2 vs. NCBI nr
Match: XP_022958635.1 (mediator of RNA polymerase II transcription subunit 21 [Cucurbita moschata] >XP_022958636.1 mediator of RNA polymerase II transcription subunit 21 [Cucurbita moschata] >XP_022996209.1 mediator of RNA polymerase II transcription subunit 21 [Cucurbita maxima] >XP_022996211.1 mediator of RNA polymerase II transcription subunit 21 [Cucurbita maxima])

HSP 1 Score: 239.2 bits (609), Expect = 8.4e-60
Identity = 129/138 (93.48%), Postives = 131/138 (94.93%), Query Frame = 0 

Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPP  EPTEDSA  AEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDSANFAEQPKLM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV 120
           SAALVKAAKQFD LVAALPLSDGGEEEQLKRIAELQAEND VGQELQKQL+AAE+EL QV
Sbjct: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELFSQVADNCLNLKKAD
Sbjct: 121 QELFSQVADNCLNLKKAD 138

[Close]
BLAST of MELO3C014729.2 vs. NCBI nr
Match: XP_023532119.1 (mediator of RNA polymerase II transcription subunit 21 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 236.5 bits (602), Expect = 5.4e-59
Identity = 127/138 (92.03%), Postives = 130/138 (94.20%), Query Frame = 0 

Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPP  EPT+DSA   EQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTDDSANFVEQPKLM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV 120
           SAALVKAAKQFD LVAALPLSDGGEEEQLKRIAELQAEND VGQELQKQL+AAE+EL QV
Sbjct: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELFSQVADNCLNLKKAD
Sbjct: 121 QELFSQVADNCLNLKKAD 138

[Close]
BLAST of MELO3C014729.2 vs. TAIR10
Match: AT4G04780.1 (mediator 21)

HSP 1 Score: 199.5 bits (506), Expect = 1.3e-51
Identity = 109/139 (78.42%), Postives = 119/139 (85.61%), Query Frame = 0 

Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSAT-IAEQPKL 60
           MDIISQLQEQVNTIAA+ FN FGTLQRDAPPV+LSPNYPEPP+     D AT   EQPK 
Sbjct: 1   MDIISQLQEQVNTIAAITFNAFGTLQRDAPPVQLSPNYPEPPATTTVTDDATPFPEQPKQ 60

Query: 61  MSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQ 120
           +SA LVKAAKQFDALVAALPLS+GGE  QLKRIAELQ END+VGQELQKQL+AAE+EL Q
Sbjct: 61  LSAGLVKAAKQFDALVAALPLSEGGEGAQLKRIAELQVENDLVGQELQKQLEAAEKELKQ 120

Query: 121 VQELFSQVADNCLNLKKAD 139
           VQELF Q ADNCLN+KK +
Sbjct: 121 VQELFGQAADNCLNMKKPE 139

[Close]
BLAST of MELO3C014729.2 vs. Swiss-Prot
Match: sp|C0LU16|MED21_ARATH (Mediator of RNA polymerase II transcription subunit 21 OS=Arabidopsis thaliana OX=3702 GN=MED21 PE=1 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 2.4e-50
Identity = 109/139 (78.42%), Postives = 119/139 (85.61%), Query Frame = 0 

Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSAT-IAEQPKL 60
           MDIISQLQEQVNTIAA+ FN FGTLQRDAPPV+LSPNYPEPP+     D AT   EQPK 
Sbjct: 1   MDIISQLQEQVNTIAAITFNAFGTLQRDAPPVQLSPNYPEPPATTTVTDDATPFPEQPKQ 60

Query: 61  MSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQ 120
           +SA LVKAAKQFDALVAALPLS+GGE  QLKRIAELQ END+VGQELQKQL+AAE+EL Q
Sbjct: 61  LSAGLVKAAKQFDALVAALPLSEGGEGAQLKRIAELQVENDLVGQELQKQLEAAEKELKQ 120

Query: 121 VQELFSQVADNCLNLKKAD 139
           VQELF Q ADNCLN+KK +
Sbjct: 121 VQELFGQAADNCLNMKKPE 139

[Close]
BLAST of MELO3C014729.2 vs. TrEMBL
Match: tr|A0A1S3BN38|A0A1S3BN38_CUCME (mediator of RNA polymerase II transcription subunit 21 OS=Cucumis melo OX=3656 GN=LOC103491637 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 1.3e-64
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0 

Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV 120
           SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELFSQVADNCLNLKKAD
Sbjct: 121 QELFSQVADNCLNLKKAD 138

[Close]
BLAST of MELO3C014729.2 vs. TrEMBL
Match: tr|A0A0A0KZ00|A0A0A0KZ00_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G268030 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 8.2e-64
Identity = 136/138 (98.55%), Postives = 138/138 (100.00%), Query Frame = 0 

Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTED+ATIAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV 120
           SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAE+ELVQV
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEKELVQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELFSQVADNCLNLKKAD
Sbjct: 121 QELFSQVADNCLNLKKAD 138

[Close]
BLAST of MELO3C014729.2 vs. TrEMBL
Match: tr|A0A1S4BT41|A0A1S4BT41_TOBAC (mediator of RNA polymerase II transcription subunit 21-like isoform X1 OS=Nicotiana tabacum OX=4097 GN=LOC107811605 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 1.4e-55
Identity = 120/138 (86.96%), Postives = 126/138 (91.30%), Query Frame = 0 

Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPP   PTED+A +AEQPK M
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPANPTEDAANVAEQPKQM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV 120
           SAA VKAAKQFDALVAALPLSDGGEE QLKRIAELQAEND VGQELQKQL+AAE+EL QV
Sbjct: 61  SAAFVKAAKQFDALVAALPLSDGGEEAQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELF+Q  DNCLNLKK +
Sbjct: 121 QELFNQATDNCLNLKKPE 138

[Close]
BLAST of MELO3C014729.2 vs. TrEMBL
Match: tr|A0A1J6IVT0|A0A1J6IVT0_NICAT (Mediator of rna polymerase ii transcription subunit 21 OS=Nicotiana attenuata OX=49451 GN=MED21 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 1.4e-55
Identity = 120/138 (86.96%), Postives = 126/138 (91.30%), Query Frame = 0 

Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPP   PTED+A +AEQPK M
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPANPTEDAANVAEQPKQM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV 120
           SAA VKAAKQFDALVAALPLSDGGEE QLKRIAELQAEND VGQELQKQL+AAE+EL QV
Sbjct: 61  SAAFVKAAKQFDALVAALPLSDGGEEAQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELF+Q  DNCLNLKK +
Sbjct: 121 QELFNQATDNCLNLKKPE 138

[Close]
BLAST of MELO3C014729.2 vs. TrEMBL
Match: tr|A0A1U7VUH3|A0A1U7VUH3_NICSY (mediator of RNA polymerase II transcription subunit 21-like isoform X1 OS=Nicotiana sylvestris OX=4096 GN=LOC104220774 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 1.4e-55
Identity = 120/138 (86.96%), Postives = 126/138 (91.30%), Query Frame = 0 

Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPP   PTED+A +AEQPK M
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPANPTEDAANVAEQPKQM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV 120
           SAA VKAAKQFDALVAALPLSDGGEE QLKRIAELQAEND VGQELQKQL+AAE+EL QV
Sbjct: 61  SAAFVKAAKQFDALVAALPLSDGGEEAQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELF+Q  DNCLNLKK +
Sbjct: 121 QELFNQATDNCLNLKKPE 138

The following BLAST results are available for this feature:
BLAST of MELO3C014729.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008449895.11.9e-64100.00PREDICTED: mediator of RNA polymerase II transcription subunit 21 [Cucumis melo][more]
XP_004149640.11.2e-6398.55PREDICTED: mediator of RNA polymerase II transcription subunit 21 [Cucumis sativ... [more]
XP_022153730.11.7e-6094.93mediator of RNA polymerase II transcription subunit 21 [Momordica charantia][more]
XP_022958635.18.4e-6093.48mediator of RNA polymerase II transcription subunit 21 [Cucurbita moschata] >XP_... [more]
XP_023532119.15.4e-5992.03mediator of RNA polymerase II transcription subunit 21 [Cucurbita pepo subsp. pe... [more]
BLAST of MELO3C014729.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G04780.11.3e-5178.42mediator 21[more]
BLAST of MELO3C014729.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|C0LU16|MED21_ARATH2.4e-5078.42Mediator of RNA polymerase II transcription subunit 21 OS=Arabidopsis thaliana O... [more]
BLAST of MELO3C014729.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BN38|A0A1S3BN38_CUCME1.3e-64100.00mediator of RNA polymerase II transcription subunit 21 OS=Cucumis melo OX=3656 G... [more]
tr|A0A0A0KZ00|A0A0A0KZ00_CUCSA8.2e-6498.55Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G268030 PE=4 SV=1[more]
tr|A0A1S4BT41|A0A1S4BT41_TOBAC1.4e-5586.96mediator of RNA polymerase II transcription subunit 21-like isoform X1 OS=Nicoti... [more]
tr|A0A1J6IVT0|A0A1J6IVT0_NICAT1.4e-5586.96Mediator of rna polymerase ii transcription subunit 21 OS=Nicotiana attenuata OX... [more]
tr|A0A1U7VUH3|A0A1U7VUH3_NICSY1.4e-5586.96mediator of RNA polymerase II transcription subunit 21-like isoform X1 OS=Nicoti... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016592mediator complex
Vocabulary: INTERPRO
TermDefinition
IPR037212Med7/Med21-like
IPR021384Mediator_Med21
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0050832 defense response to fungus
biological_process GO:0009817 defense response to fungus, incompatible interaction
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006357 regulation of transcription from RNA polymerase II promoter
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0008150 biological_process
cellular_component GO:0016592 mediator complex
cellular_component GO:0005634 nucleus
cellular_component GO:0043078 polar nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0001104 RNA polymerase II transcription cofactor activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C014729.2.1MELO3C014729.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 92..130
NoneNo IPR availableGENE3DG3DSA:1.20.58.470coord: 1..130
e-value: 1.8E-17
score: 65.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..50
IPR021384Mediator complex, subunit Med21PFAMPF11221Med21coord: 1..128
e-value: 3.2E-27
score: 95.4
IPR021384Mediator complex, subunit Med21PANTHERPTHR13381RNA POLYMERASE II HOLOENZYME COMPONENT SRB7coord: 1..137
IPR037212Mediator complex, subunit Med7/Med21-likeSUPERFAMILYSSF140718Mediator hinge subcomplex-likecoord: 1..126

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C014729.2Csa4G268030Cucumber (Chinese Long) v2cumedB279
MELO3C014729.2CSPI04G12500Wild cucumber (PI 183967)cpimedB283
MELO3C014729.2Cucsa.152690Cucumber (Gy14) v1cgymedB255
MELO3C014729.2Cp4.1LG05g05620Cucurbita pepo (Zucchini)cpemedB829
MELO3C014729.2CsGy4G011750Cucumber (Gy14) v2cgybmedB248
MELO3C014729.2Cla97C02G050680Watermelon (97103) v2medwmbB368
MELO3C014729.2Bhi10G000403Wax gourdmedwgoB485
MELO3C014729.2Carg13978Silver-seed gourdcarmedB0518
MELO3C014729.2CsaV3_4G017560Cucumber (Chinese Long) v3cucmedB287
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C014729.2Cucurbita maxima (Rimu)cmamedB598
MELO3C014729.2Cucurbita maxima (Rimu)cmamedB654
MELO3C014729.2Cucurbita moschata (Rifu)cmomedB585
MELO3C014729.2Cucurbita moschata (Rifu)cmomedB642
MELO3C014729.2Cucurbita pepo (Zucchini)cpemedB324
MELO3C014729.2Bottle gourd (USVL1VR-Ls)lsimedB074
MELO3C014729.2Watermelon (Charleston Gray)medwcgB370
MELO3C014729.2Watermelon (97103) v1medwmB408