ClCG03G017800 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG03G017800
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Zinc finger matrin-type protein 5-like protein
Location	CG_Chr03 : 32954658 .. 32955947 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGCAGCAGAAGATTGTAGGAGAAATTGATTATTAAGAAACCTTTGGAACAAAGAAGAAGAAGAAGAAGAAGAAGAAGATGCCACTGGGAAAATATTATTGCGATTACTGCGAGAAGCAATTCCAAGACACTCCTTTCGCTCGAAAACGCCATCTTCAAAGCCTTTCCCATCAGAAAGCCAAAGCTCTCTGGTTCGACTCCTTCAATCAACCTTTCTCTGATTCCTTCCACTTCCGGCGGGGCTTTTGTAATCGGTTCCTCACTACGGTAATTCTTCTCTTCCCTTTGCATCGCATCACATCGCATCGCTTCGCTTCCATTTTCTTTTAACCTAATTTTTGCTTCTCCTTCGCCTTCTTTTCAAAGGGTTTCTGCCAGTACGGTGATTCTTGTAAATATTTTCACCCCAACAACAACAATACTACACACAACTCCACTTCTCACCCCATTGCAAATATTCCGGAAAATAATCAACCCCCAAATATTCCGGTGAATCCATTCGCAGACGGCAGCTCTTTCACTGGTAACTTGAACTGAACTCGTTGCTGCGTATTTTGATGCTTGAAACCATCGGACAGCTTTATGTGTTCCACACTTCATTTGTTTATTATTTACCAACAGCACTGCATTTTTTCATTCATAGGAACAATCGACCTATTCCCATCTCCATTCCTCTTTCATTGACCCATTTTGAACAGGACCTTTGATCTTTTACGTAGTGCTTGTTATATGAATCTGCAAATCATTCTGAGTTATGAACAGCACCCATCATTGTTTACGAACCAACCTATAAATCATTCTGAGTTCTACATATTATTTGAATCATTTAGTTTTAAGGTTTCTGTCGCTTACATTTGATAATCTTTACCTTCAGGTAGTTTAGTTAGCGATAGCATGGGAAGAACATCATGGGGCAATTTACCTCCATCACTGATGCCTCCTCCAGAGGGTGGATACCCACCACTCCCTTTTGTTGATTGGGGATAATCCACCAATTTCAGTTATTGGTACAACTCTCCTTGGTTCTCTTGTTTCTGTCCTGCTCTACTTGTGCAGAAATTTGTACAAATTTGGTGTCTTCAACAGCCAGGCAAATGTTCTTTTCCTTGTTTTCGAGTACGATATACAACCCACAAGTGTCATAAACTTCCATCTTTTCTTAATGTTTACGTATTTAGTTGCATATGTTATAGCTCAAGTTGTGATGTCATGATATGTCGAGTTTATGGTGCTCTAAACTTGTTGAGATCATCATGATCGAAACATGCAGTAATATGACGAGAGTTG

mRNA sequence

ATGAGGCAGCAGAAGATTGTAGGAGAAATTGATTATTAAGAAACCTTTGGAACAAAGAAGAAGAAGAAGAAGAAGAAGAAGATGCCACTGGGAAAATATTATTGCGATTACTGCGAGAAGCAATTCCAAGACACTCCTTTCGCTCGAAAACGCCATCTTCAAAGCCTTTCCCATCAGAAAGCCAAAGCTCTCTGGTTCGACTCCTTCAATCAACCTTTCTCTGATTCCTTCCACTTCCGGCGGGGCTTTTGTAATCGGTTCCTCACTACGGGTTTCTGCCAGTACGGTGATTCTTGTAAATATTTTCACCCCAACAACAACAATACTACACACAACTCCACTTCTCACCCCATTGCAAATATTCCGGAAAATAATCAACCCCCAAATATTCCGGTGAATCCATTCGCAGACGGCAGCTCTTTCACTGGTAGTTTAGTTAGCGATAGCATGGGAAGAACATCATGGGGCAATTTACCTCCATCACTGATGCCTCCTCCAGAGGGTGGATACCCACCACTCCCTTTTGTTGATTGGGGATAATCCACCAATTTCAGTTATTGGTACAACTCTCCTTGGTTCTCTTGTTTCTGTCCTGCTCTACTTGTGCAGAAATTTGTACAAATTTGGTGTCTTCAACAGCCAGGCAAATGTTCTTTTCCTTGTTTTCGAGTACGATATACAACCCACAAGTGTCATAAACTTCCATCTTTTCTTAATGTTTACGTATTTAGTTGCATATGTTATAGCTCAAGTTGTGATGTCATGATATGTCGAGTTTATGGTGCTCTAAACTTGTTGAGATCATCATGATCGAAACATGCAGTAATATGACGAGAGTTG

Coding sequence (CDS)

ATGCCACTGGGAAAATATTATTGCGATTACTGCGAGAAGCAATTCCAAGACACTCCTTTCGCTCGAAAACGCCATCTTCAAAGCCTTTCCCATCAGAAAGCCAAAGCTCTCTGGTTCGACTCCTTCAATCAACCTTTCTCTGATTCCTTCCACTTCCGGCGGGGCTTTTGTAATCGGTTCCTCACTACGGGTTTCTGCCAGTACGGTGATTCTTGTAAATATTTTCACCCCAACAACAACAATACTACACACAACTCCACTTCTCACCCCATTGCAAATATTCCGGAAAATAATCAACCCCCAAATATTCCGGTGAATCCATTCGCAGACGGCAGCTCTTTCACTGGTAGTTTAGTTAGCGATAGCATGGGAAGAACATCATGGGGCAATTTACCTCCATCACTGATGCCTCCTCCAGAGGGTGGATACCCACCACTCCCTTTTGTTGATTGGGGATAA

Protein sequence

MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFNQPFSDSFHFRRGFCNRFLTTGFCQYGDSCKYFHPNNNNTTHNSTSHPIANIPENNQPPNIPVNPFADGSSFTGSLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG

Homology

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BLAST of ClCG03G017800 vs. Swiss-Prot
Match: C3H3_ORYSJ (Zinc finger CCCH domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=Os01g0252200 PE=2 SV=2)

HSP 1 Score: 168.7 bits (426), Expect = 4.9e-41
Identity = 86/174 (49.43%), Postives = 100/174 (57.47%), Query Frame = 1


Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDS----------------FNQ 60
           MPLGKYYCDYCEKQFQDTP ARKRHL    H +A+ALW+D+                 +Q
Sbjct: 1   MPLGKYYCDYCEKQFQDTPAARKRHLDGAQHHRARALWYDAVRRQELHGGGGGAPPLLHQ 60

Query: 61  PFSDSFHFRRGFCNRFLTTGFCQYGDSCKYFHP-----NNNNTTHNSTSHPIANIPE-NN 120
           P + +     G C  F+ TG C++GDSC+YFHP     N         S P+A       
Sbjct: 61  PGAAAI----GVCQHFVRTGTCKFGDSCRYFHPKPPPANPGPAPSGPVSGPMAQQSNIQG 120

Query: 121 QPPNIPVNPFADGSSFTGSLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 153
             PN      ADGSSF+G+++    G TSWGNLPPSL PPPEGGYPP PFVDWG
Sbjct: 121 SQPNFVGYQAADGSSFSGNILG---GHTSWGNLPPSLRPPPEGGYPPFPFVDWG 167

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BLAST of ClCG03G017800 vs. Swiss-Prot
Match: ZMAT5_BOVIN (Zinc finger matrin-type protein 5 OS=Bos taurus GN=ZMAT5 PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.2e-17
Identity = 52/169 (30.77%), Postives = 74/169 (43.79%), Query Frame = 1


Query: 5   KYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFNQPFS---DSFHFRRGFCNRFL 64
           +Y+CDYC++ FQD    RK+HL  L H KAK LW+D F    +   D  + R   C +FL
Sbjct: 4   RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKLWYDMFRDAAAILLDEQNKRP--CRKFL 63

Query: 65  TTGFCQYGDSCKYFHPNNNNTTHNSTS-----------HPIANIPE-------NNQPPNI 124
            TG C +G +C++ H +  +    S               +A +PE         +   +
Sbjct: 64  LTGQCDFGSNCRFSHMSERDLQELSVQVEEERRAREWPLDVAELPEVCLEDWLEKRAKRL 123

Query: 125 PVNPFADGSSFTGSLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 153
              P +       ++    +G      LPPSL  PP GG+P  P V WG
Sbjct: 124 SSAPSSRAEPVRATVFQYPVGWPPVQELPPSLRAPPPGGWPLQPSVQWG 170

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BLAST of ClCG03G017800 vs. Swiss-Prot
Match: ZMAT5_MOUSE (Zinc finger matrin-type protein 5 OS=Mus musculus GN=Zmat5 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 9.3e-16
Identity = 51/169 (30.18%), Postives = 75/169 (44.38%), Query Frame = 1


Query: 5   KYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFNQPFS---DSFHFRRGFCNRFL 64
           +Y+CDYC++ FQD    RK+HL  L H KAK +W+D F    +   D  + R   C +FL
Sbjct: 4   RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLDEQNKRP--CRKFL 63

Query: 65  TTGFCQYGDSCKYFHPNNNNTTHNST---------SHPI--ANIPENN-------QPPNI 124
            TG C +G +C++ H +  +    S            P+  A +PE +       +   +
Sbjct: 64  LTGQCDFGSNCRFSHMSEQDLQELSVQVEEERRAREWPLETAELPEGHLEDWLEKRAKRL 123

Query: 125 PVNPFADGSSFTGSLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 153
              P +       ++    +G      LPPSL  PP GG+  L  V WG
Sbjct: 124 SSAPSSRAEPIRTTVFQYPVGWPPMQELPPSLRAPPPGGWSVLSKVQWG 170

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BLAST of ClCG03G017800 vs. Swiss-Prot
Match: ZMAT5_HUMAN (Zinc finger matrin-type protein 5 OS=Homo sapiens GN=ZMAT5 PE=1 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 9.3e-16
Identity = 50/169 (29.59%), Postives = 73/169 (43.20%), Query Frame = 1


Query: 5   KYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFNQPFS---DSFHFRRGFCNRFL 64
           +Y+CDYC++ FQD    RK+HL  L H KAK +W+D F    +   D  + R   C +FL
Sbjct: 4   RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLDEQNKRP--CRKFL 63

Query: 65  TTGFCQYGDSCKYFHPNNNNTTHNS--------TSHPIANIPE----------NNQPPNI 124
            TG C +G +C++ H +  +    S            + + PE            +   +
Sbjct: 64  LTGQCDFGSNCRFSHMSERDLQELSIQVEEERRAREWLLDAPELPEGHLEDWLEKRAKRL 123

Query: 125 PVNPFADGSSFTGSLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 153
              P +       ++    +G      LPPSL  PP GG+P  P V WG
Sbjct: 124 SSAPSSRAEPIRTTVFQYPVGWPPVQELPPSLRAPPPGGWPLQPRVQWG 170

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BLAST of ClCG03G017800 vs. Swiss-Prot
Match: ZMAT5_DANRE (Zinc finger matrin-type protein 5 OS=Danio rerio GN=zmat5 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-13
Identity = 52/178 (29.21%), Postives = 73/178 (41.01%), Query Frame = 1


Query: 5   KYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFNQPFSDSFHFR-RGFCNRFLTT 64
           +YYCDYC++ FQD    RK+HL  + H +AK  WFD+F    +     R +  C +F+ T
Sbjct: 4   RYYCDYCDRSFQDNLHNRKKHLNGVQHHRAKKAWFDNFRDAATLLNDERSKEVCRKFVQT 63

Query: 65  GFCQYGDSCKYFHPNNNNTTHNSTSHPIANIPENNQPPNIPVNPFADGSSFTG------- 124
           G C +G SC++ H +            I +     + P+       DGSS          
Sbjct: 64  GQCVFGTSCRFSHMSEKQM--KMLEQKIDDEKRQKEDPD------QDGSSERSVDEWLSR 123

Query: 125 ---SLVSDSMGRT-------------------SWGNLPPSLMPPPEGGYPPLPFVDWG 153
               L + + GR                    S  +LPPSL PPP GG+      +WG
Sbjct: 124 REKKLAALTSGRVLRMEEEECTENIEIPPYLLSIPDLPPSLHPPPAGGWRVTVHNEWG 173

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BLAST of ClCG03G017800 vs. TrEMBL
Match: A0A0A0M1B0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560650 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 2.7e-70
Identity = 127/157 (80.89%), Postives = 137/157 (87.26%), Query Frame = 1


Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSF---NQPFSDSFHFRRGFC 60
           MPLGKYYCDYC+KQFQDTPFARKRHLQSLSHQKAKALWFDSF   NQ F  SFHFR   C
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRIC 60

Query: 61  NRFLTTGFCQYGDSCKYFHPNNNN-TTHNSTSHPIANIPENNQPPNIPVNPFADG-SSFT 120
           NRFL+TGFCQYGDSCKYFHPNNNN  T+NS+S+P+A  PEN QPPN+PVN F DG SS T
Sbjct: 61  NRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSST 120

Query: 121 GSLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 153
           GSL+SD +G TSWGNLPPSLMPPP+GGYPPLPFVDWG
Sbjct: 121 GSLISDRLG-TSWGNLPPSLMPPPDGGYPPLPFVDWG 156

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BLAST of ClCG03G017800 vs. TrEMBL
Match: D7UA82_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g00610 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.6e-51
Identity = 95/153 (62.09%), Postives = 111/153 (72.55%), Query Frame = 1


Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFNQPFS-DSFHFRRGFCNR 60
           MPLGKY+CDYC+KQFQDTP ARKRHLQ L HQ+AKALW+DSF  P    +  + +G CNR
Sbjct: 1   MPLGKYHCDYCDKQFQDTPSARKRHLQGLQHQRAKALWYDSFRDPNQIQAEGYGKGVCNR 60

Query: 61  FLTTGFCQYGDSCKYFHPNNNNTTHNSTSHPIANIPENNQPPNIPVNPFADGSSFTGSLV 120
           F+ TGFCQYGDSCKYFHP  +    N+ S P+   P+N Q  + P N    G    G++V
Sbjct: 61  FVRTGFCQYGDSCKYFHPKQSLQNTNTQSIPVTGFPDNIQSLSNPGNQLVGGGPLPGNVV 120

Query: 121 SDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 153
            DSMG  SWGNLPPSL PPPEGGYPPLPF+DWG
Sbjct: 121 KDSMG-NSWGNLPPSLKPPPEGGYPPLPFLDWG 152

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BLAST of ClCG03G017800 vs. TrEMBL
Match: A0A067JTM5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23183 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.2e-46
Identity = 94/158 (59.49%), Postives = 110/158 (69.62%), Query Frame = 1


Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSF-----NQPFSDSFHFRRG 60
           MPLGKYYCDYCEK+FQDT  ARKRHLQS SH +AK+LW+ S      +Q ++D     +G
Sbjct: 1   MPLGKYYCDYCEKEFQDTAIARKRHLQSASHVRAKSLWYASLRSGDPSQTYADG---AKG 60

Query: 61  FCNRFLTTGFCQYGDSCKYFHPNN-NNTTHNSTSHPIANIPENNQPPNIPVNPFADGSSF 120
            CNRF+ TGFC YGDSCKY HPNN NN  +N  +   A + +N Q P IP +    GSS 
Sbjct: 61  ICNRFVKTGFCPYGDSCKYLHPNNSNNLQNNVGTSQAAGLMDNVQSPFIPGSQLVGGSSL 120

Query: 121 TGSLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 153
            G ++ DSMG   WGNLPPSL PPPEGGY PLPFVDWG
Sbjct: 121 PGEMLRDSMG-MPWGNLPPSLKPPPEGGYLPLPFVDWG 154

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BLAST of ClCG03G017800 vs. TrEMBL
Match: M5WL08_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016420mg PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.2e-46
Identity = 90/153 (58.82%), Postives = 105/153 (68.63%), Query Frame = 1


Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFNQP-FSDSFHFRRGFCNR 60
           MPLGKYYC+YC+K+FQDTP AR+RHLQ L H +AKA W+DSF  P  + +    +G CNR
Sbjct: 1   MPLGKYYCEYCDKEFQDTPSARRRHLQGLQHLRAKAQWYDSFKDPSHAYTEGLTKGVCNR 60

Query: 61  FLTTGFCQYGDSCKYFHPNNNNTTHNSTSHPIANIPENNQPPNIPVNPFADGSSFTGSLV 120
           F+ TGFC YGDSC+Y HP NN    N  +     + +NNQ      N    GSS    +V
Sbjct: 61  FVKTGFCPYGDSCRYLHPKNNQ--QNMVTQGAPGLIDNNQSSTFQENQLVGGSSLPDVVV 120

Query: 121 SDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 153
            DSMG  SWGNLPPSLMPPPEGGYPPLPFVDWG
Sbjct: 121 RDSMG-MSWGNLPPSLMPPPEGGYPPLPFVDWG 150

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BLAST of ClCG03G017800 vs. TrEMBL
Match: B9I6N1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s00620g PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 2.1e-46
Identity = 96/158 (60.76%), Postives = 111/158 (70.25%), Query Frame = 1


Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWF------DSFNQPFSDSFHFRR 60
           MP+GKYYCDYC+KQFQDTP ARKRHLQS SH +AK+LWF      ++ N   +D+  F +
Sbjct: 1   MPVGKYYCDYCDKQFQDTPHARKRHLQSSSHLRAKSLWFSRNSNSNTLNSNNTDAGGFVK 60

Query: 61  GFCNRFLTTGFCQYGDSCKYFHPNNNNTTHNSTSHPIANIPENNQPPNIPVNPFADGSSF 120
           G CNRF+ TGFC YGDSCKY H      T+ +TS   A   +N Q P +P N  A GSSF
Sbjct: 61  GLCNRFVKTGFCPYGDSCKYLH------TNFATSQGTA-FKDNVQSPTMPGNQLAGGSSF 120

Query: 121 TGSLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 153
            G  V +SMG  SWGNLPPSL PPPEGGYPPLPFVDWG
Sbjct: 121 PGVAVRESMG-MSWGNLPPSLKPPPEGGYPPLPFVDWG 150

[Close]

BLAST of ClCG03G017800 vs. TAIR10
Match: AT5G26749.2 (AT5G26749.2 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 149.4 bits (376), Expect = 1.7e-36
Identity = 79/174 (45.40%), Postives = 94/174 (54.02%), Query Frame = 1


Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFNQPFSD---SFHFRRGFC 60
           MP GKYYCDYCEK+FQDT  ARKRHLQS  H +AKALW+ S +    +   S    +G C
Sbjct: 1   MPSGKYYCDYCEKEFQDTQVARKRHLQSKPHLRAKALWYSSSSSDLVNPQVSNFATKGLC 60

Query: 61  NRFLTT-------------------GFCQYGDSCKYFHPNNNNTTHNSTSHPIANIPENN 120
           NRF+T+                    FC +GDSC+YFHPNNN  +   T++    +   N
Sbjct: 61  NRFITSVRRIDFVSLCSSFLAISGCNFCPFGDSCRYFHPNNNTGSTGFTNNTQLRVDMLN 120

Query: 121 QPPNIPVNPFADGSSFTGSLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 153
           Q           GS+     VS   G T W +LPPSL PPPE GYP LPF+DWG
Sbjct: 121 Q-------QHIQGSTLNRDFVSGRPG-TGWFDLPPSLKPPPEQGYPQLPFIDWG 166

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BLAST of ClCG03G017800 vs. NCBI nr
Match: gi|659099282|ref|XP_008450521.1| (PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis melo])

HSP 1 Score: 276.9 bits (707), Expect = 2.0e-71
Identity = 130/158 (82.28%), Postives = 137/158 (86.71%), Query Frame = 1


Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSF---NQPFSDSFHFRRGFC 60
           MPLGKYYCDYC+KQFQDTPFARKRHLQSLSHQKAKALWFDSF   NQ F  SFHFR   C
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRIC 60

Query: 61  NRFLTTGFCQYGDSCKYFHP--NNNNTTHNSTSHPIANIPENNQPPNIPVNPFADG-SSF 120
           NRFL+TGFCQYGDSCKYFHP  N+N+ THNS+SHPIA  PENNQPPN+P N F DG SS 
Sbjct: 61  NRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFPENNQPPNVPFNRFVDGNSSS 120

Query: 121 TGSLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 153
           TGSLVSD +G TSWGNLPPSLMPPPEGGYPPLPFVDWG
Sbjct: 121 TGSLVSDRLG-TSWGNLPPSLMPPPEGGYPPLPFVDWG 157

[Close]

BLAST of ClCG03G017800 vs. NCBI nr
Match: gi|449435572|ref|XP_004135569.1| (PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis sativus])

HSP 1 Score: 272.7 bits (696), Expect = 3.9e-70
Identity = 127/157 (80.89%), Postives = 137/157 (87.26%), Query Frame = 1


Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSF---NQPFSDSFHFRRGFC 60
           MPLGKYYCDYC+KQFQDTPFARKRHLQSLSHQKAKALWFDSF   NQ F  SFHFR   C
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRIC 60

Query: 61  NRFLTTGFCQYGDSCKYFHPNNNN-TTHNSTSHPIANIPENNQPPNIPVNPFADG-SSFT 120
           NRFL+TGFCQYGDSCKYFHPNNNN  T+NS+S+P+A  PEN QPPN+PVN F DG SS T
Sbjct: 61  NRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSST 120

Query: 121 GSLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 153
           GSL+SD +G TSWGNLPPSLMPPP+GGYPPLPFVDWG
Sbjct: 121 GSLISDRLG-TSWGNLPPSLMPPPDGGYPPLPFVDWG 156

[Close]

BLAST of ClCG03G017800 vs. NCBI nr
Match: gi|731415967|ref|XP_010659728.1| (PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X1 [Vitis vinifera])

HSP 1 Score: 210.3 bits (534), Expect = 2.4e-51
Identity = 95/153 (62.09%), Postives = 111/153 (72.55%), Query Frame = 1


Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFNQPFS-DSFHFRRGFCNR 60
           MPLGKY+CDYC+KQFQDTP ARKRHLQ L HQ+AKALW+DSF  P    +  + +G CNR
Sbjct: 1   MPLGKYHCDYCDKQFQDTPSARKRHLQGLQHQRAKALWYDSFRDPNQIQAEGYGKGVCNR 60

Query: 61  FLTTGFCQYGDSCKYFHPNNNNTTHNSTSHPIANIPENNQPPNIPVNPFADGSSFTGSLV 120
           F+ TGFCQYGDSCKYFHP  +    N+ S P+   P+N Q  + P N    G    G++V
Sbjct: 61  FVRTGFCQYGDSCKYFHPKQSLQNTNTQSIPVTGFPDNIQSLSNPGNQLVGGGPLPGNVV 120

Query: 121 SDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 153
            DSMG  SWGNLPPSL PPPEGGYPPLPF+DWG
Sbjct: 121 KDSMG-NSWGNLPPSLKPPPEGGYPPLPFLDWG 152

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BLAST of ClCG03G017800 vs. NCBI nr
Match: gi|470132887|ref|XP_004302306.1| (PREDICTED: zinc finger CCCH domain-containing protein 3 [Fragaria vesca subsp. vesca])

HSP 1 Score: 202.6 bits (514), Expect = 4.9e-49
Identity = 95/154 (61.69%), Postives = 112/154 (72.73%), Query Frame = 1


Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFNQPFSDSF--HFRRGFCN 60
           MPLGKY C+YC KQFQDTP+AR+RHLQSL H +AKA WFDSF  P +D++     RG CN
Sbjct: 1   MPLGKYDCEYCNKQFQDTPYARRRHLQSLQHLRAKAQWFDSFKDP-NDAYAQSLGRGVCN 60

Query: 61  RFLTTGFCQYGDSCKYFHPNNNNTTHNSTSHPIANIPENNQPPNIPVNPFADGSSFTGSL 120
           RF+ TGFCQYGD+CKYFHP NN    N+ +   + + +N+Q   I  N    GSS    +
Sbjct: 61  RFVNTGFCQYGDACKYFHPKNNQ--QNTITQGASGVTDNSQSSTIQGNQMVAGSSLPDVV 120

Query: 121 VSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 153
           V D+MG  SWGNLPPSLMPPPEGGYPPLPFVDWG
Sbjct: 121 VRDNMG-MSWGNLPPSLMPPPEGGYPPLPFVDWG 150

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BLAST of ClCG03G017800 vs. NCBI nr
Match: gi|802755253|ref|XP_012088844.1| (PREDICTED: zinc finger CCCH domain-containing protein 3 [Jatropha curcas])

HSP 1 Score: 194.1 bits (492), Expect = 1.7e-46
Identity = 94/158 (59.49%), Postives = 110/158 (69.62%), Query Frame = 1


Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSF-----NQPFSDSFHFRRG 60
           MPLGKYYCDYCEK+FQDT  ARKRHLQS SH +AK+LW+ S      +Q ++D     +G
Sbjct: 1   MPLGKYYCDYCEKEFQDTAIARKRHLQSASHVRAKSLWYASLRSGDPSQTYADG---AKG 60

Query: 61  FCNRFLTTGFCQYGDSCKYFHPNN-NNTTHNSTSHPIANIPENNQPPNIPVNPFADGSSF 120
            CNRF+ TGFC YGDSCKY HPNN NN  +N  +   A + +N Q P IP +    GSS 
Sbjct: 61  ICNRFVKTGFCPYGDSCKYLHPNNSNNLQNNVGTSQAAGLMDNVQSPFIPGSQLVGGSSL 120

Query: 121 TGSLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 153
            G ++ DSMG   WGNLPPSL PPPEGGY PLPFVDWG
Sbjct: 121 PGEMLRDSMG-MPWGNLPPSLKPPPEGGYLPLPFVDWG 154

The following BLAST results are available for this feature:

BLAST of ClCG03G017800 vs. Swiss-Prot


Match Name	E-value	Identity	Description
C3H3_ORYSJ	4.9e-41	49.43	Zinc finger CCCH domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=...	[more]
ZMAT5_BOVIN	2.2e-17	30.77	Zinc finger matrin-type protein 5 OS=Bos taurus GN=ZMAT5 PE=2 SV=1	[more]
ZMAT5_MOUSE	9.3e-16	30.18	Zinc finger matrin-type protein 5 OS=Mus musculus GN=Zmat5 PE=2 SV=1	[more]
ZMAT5_HUMAN	9.3e-16	29.59	Zinc finger matrin-type protein 5 OS=Homo sapiens GN=ZMAT5 PE=1 SV=1	[more]
ZMAT5_DANRE	1.1e-13	29.21	Zinc finger matrin-type protein 5 OS=Danio rerio GN=zmat5 PE=2 SV=1	[more]

BLAST of ClCG03G017800 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M1B0_CUCSA	2.7e-70	80.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560650 PE=4 SV=1	[more]
D7UA82_VITVI	1.6e-51	62.09	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g00610 PE=4 SV=...	[more]
A0A067JTM5_JATCU	1.2e-46	59.49	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23183 PE=4 SV=1	[more]
M5WL08_PRUPE	1.2e-46	58.82	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016420mg PE=4 SV=1	[more]
B9I6N1_POPTR	2.1e-46	60.76	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s00620g PE=4 SV=1	[more]

BLAST of ClCG03G017800 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G26749.2	1.7e-36	45.40	C2H2 and C2HC zinc fingers superfamily protein	[more]

BLAST of ClCG03G017800 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659099282\|ref\|XP_008450521.1\|	2.0e-71	82.28	PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis melo]	[more]
gi\|449435572\|ref\|XP_004135569.1\|	3.9e-70	80.89	PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis sativus]	[more]
gi\|731415967\|ref\|XP_010659728.1\|	2.4e-51	62.09	PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X1 [Vitis vinife...	[more]
gi\|470132887\|ref\|XP_004302306.1\|	4.9e-49	61.69	PREDICTED: zinc finger CCCH domain-containing protein 3 [Fragaria vesca subsp. v...	[more]
gi\|802755253\|ref\|XP_012088844.1\|	1.7e-46	59.49	PREDICTED: zinc finger CCCH domain-containing protein 3 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000571	Znf_CCCH
IPR003604	Matrin/U1-like-C_Znf_C2H2
IPR013085	U1-CZ_Znf_C2H2

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding
GO:0003676	nucleic acid binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004674	protein serine/threonine kinase activity
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0004672	protein kinase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G017800.1	ClCG03G017800.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	GENE3D	G3DSA:4.10.1000.10		coord: 56..77 score: 1.
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 57..77 score: 2.
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 53..78 score: 0
IPR000571	Zinc finger, CCCH-type	PROFILE	PS50103	ZF_C3H1	coord: 52..79 score: 12
IPR000571	Zinc finger, CCCH-type	unknown	SSF90229	CCCH zinc finger	coord: 50..79 score: 9.9
IPR003604	Zinc finger, U1-type	SMART	SM00451	ZnF_U1_5	coord: 3..38 score: 1.
IPR013085	Zinc finger, U1-C type	PFAM	PF06220	zf-U1	coord: 5..36 score: 3.
None	No IPR available	PANTHER	PTHR16465	NUCLEASE-RELATED	coord: 2..152 score: 3.0
None	No IPR available	unknown	SSF57667	beta-beta-alpha zinc fingers	coord: 4..46 score: 1.45

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG03G017800	Csa1G560650	Cucumber (Chinese Long) v2	cuwcgB040
ClCG03G017800	MELO3C015248	Melon (DHL92) v3.5.1	mewcgB245
ClCG03G017800	Cla005152	Watermelon (97103) v1	wcgwmB224
ClCG03G017800	Cla97C03G068210	Watermelon (97103) v2	wcgwmbB186
ClCG03G017800	CSPI01G25540	Wild cucumber (PI 183967)	cpiwcgB042
ClCG03G017800	Cucsa.050840	Cucumber (Gy14) v1	cgywcgB035
ClCG03G017800	CmaCh11G012250	Cucurbita maxima (Rimu)	cmawcgB114
ClCG03G017800	CmoCh11G012780	Cucurbita moschata (Rifu)	cmowcgB102
ClCG03G017800	Lsi06G000320	Bottle gourd (USVL1VR-Ls)	lsiwcgB364
ClCG03G017800	CsGy1G024900	Cucumber (Gy14) v2	cgybwcgB038
ClCG03G017800	MELO3C015247.2	Melon (DHL92) v3.6.1	medwcgB237
ClCG03G017800	CsaV3_1G037970	Cucumber (Chinese Long) v3	cucwcgB043

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG03G017800	Cucumber (Chinese Long) v3	cucwcgB053
ClCG03G017800	Wax gourd	wcgwgoB363
ClCG03G017800	Watermelon (Charleston Gray)	wcgwcgB125
ClCG03G017800	Cucumber (Gy14) v1	cgywcgB037
ClCG03G017800	Cucurbita maxima (Rimu)	cmawcgB055
ClCG03G017800	Cucurbita moschata (Rifu)	cmowcgB046
ClCG03G017800	Wild cucumber (PI 183967)	cpiwcgB049
ClCG03G017800	Cucumber (Chinese Long) v2	cuwcgB050
ClCG03G017800	Cucumber (Chinese Long) v2	cuwcgB135
ClCG03G017800	Watermelon (97103) v1	wcgwmB242
ClCG03G017800	Cucurbita pepo (Zucchini)	cpewcgB109
ClCG03G017800	Cucurbita pepo (Zucchini)	cpewcgB328
ClCG03G017800	Cucurbita pepo (Zucchini)	cpewcgB604
ClCG03G017800	Bottle gourd (USVL1VR-Ls)	lsiwcgB105
ClCG03G017800	Cucumber (Gy14) v2	cgybwcgB047