ClCG03G017800.1 (mRNA) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG03G017800.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Zinc finger matrin-type protein 5-like protein
Location	CG_Chr03 : 32954658 .. 32955947 (-)
Sequence length	840

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGCAGCAGAAGATTGTAGGAGAAATTGATTATTAAGAAACCTTTGGAACAAAGAAGAAGAAGAAGAAGAAGAAGAAGATGCCACTGGGAAAATATTATTGCGATTACTGCGAGAAGCAATTCCAAGACACTCCTTTCGCTCGAAAACGCCATCTTCAAAGCCTTTCCCATCAGAAAGCCAAAGCTCTCTGGTTCGACTCCTTCAATCAACCTTTCTCTGATTCCTTCCACTTCCGGCGGGGCTTTTGTAATCGGTTCCTCACTACGGTAATTCTTCTCTTCCCTTTGCATCGCATCACATCGCATCGCTTCGCTTCCATTTTCTTTTAACCTAATTTTTGCTTCTCCTTCGCCTTCTTTTCAAAGGGTTTCTGCCAGTACGGTGATTCTTGTAAATATTTTCACCCCAACAACAACAATACTACACACAACTCCACTTCTCACCCCATTGCAAATATTCCGGAAAATAATCAACCCCCAAATATTCCGGTGAATCCATTCGCAGACGGCAGCTCTTTCACTGGTAACTTGAACTGAACTCGTTGCTGCGTATTTTGATGCTTGAAACCATCGGACAGCTTTATGTGTTCCACACTTCATTTGTTTATTATTTACCAACAGCACTGCATTTTTTCATTCATAGGAACAATCGACCTATTCCCATCTCCATTCCTCTTTCATTGACCCATTTTGAACAGGACCTTTGATCTTTTACGTAGTGCTTGTTATATGAATCTGCAAATCATTCTGAGTTATGAACAGCACCCATCATTGTTTACGAACCAACCTATAAATCATTCTGAGTTCTACATATTATTTGAATCATTTAGTTTTAAGGTTTCTGTCGCTTACATTTGATAATCTTTACCTTCAGGTAGTTTAGTTAGCGATAGCATGGGAAGAACATCATGGGGCAATTTACCTCCATCACTGATGCCTCCTCCAGAGGGTGGATACCCACCACTCCCTTTTGTTGATTGGGGATAATCCACCAATTTCAGTTATTGGTACAACTCTCCTTGGTTCTCTTGTTTCTGTCCTGCTCTACTTGTGCAGAAATTTGTACAAATTTGGTGTCTTCAACAGCCAGGCAAATGTTCTTTTCCTTGTTTTCGAGTACGATATACAACCCACAAGTGTCATAAACTTCCATCTTTTCTTAATGTTTACGTATTTAGTTGCATATGTTATAGCTCAAGTTGTGATGTCATGATATGTCGAGTTTATGGTGCTCTAAACTTGTTGAGATCATCATGATCGAAACATGCAGTAATATGACGAGAGTTG

mRNA sequence

ATGAGGCAGCAGAAGATTGTAGGAGAAATTGATTATTAAGAAACCTTTGGAACAAAGAAGAAGAAGAAGAAGAAGAAGAAGATGCCACTGGGAAAATATTATTGCGATTACTGCGAGAAGCAATTCCAAGACACTCCTTTCGCTCGAAAACGCCATCTTCAAAGCCTTTCCCATCAGAAAGCCAAAGCTCTCTGGTTCGACTCCTTCAATCAACCTTTCTCTGATTCCTTCCACTTCCGGCGGGGCTTTTGTAATCGGTTCCTCACTACGGGTTTCTGCCAGTACGGTGATTCTTGTAAATATTTTCACCCCAACAACAACAATACTACACACAACTCCACTTCTCACCCCATTGCAAATATTCCGGAAAATAATCAACCCCCAAATATTCCGGTGAATCCATTCGCAGACGGCAGCTCTTTCACTGGTAGTTTAGTTAGCGATAGCATGGGAAGAACATCATGGGGCAATTTACCTCCATCACTGATGCCTCCTCCAGAGGGTGGATACCCACCACTCCCTTTTGTTGATTGGGGATAATCCACCAATTTCAGTTATTGGTACAACTCTCCTTGGTTCTCTTGTTTCTGTCCTGCTCTACTTGTGCAGAAATTTGTACAAATTTGGTGTCTTCAACAGCCAGGCAAATGTTCTTTTCCTTGTTTTCGAGTACGATATACAACCCACAAGTGTCATAAACTTCCATCTTTTCTTAATGTTTACGTATTTAGTTGCATATGTTATAGCTCAAGTTGTGATGTCATGATATGTCGAGTTTATGGTGCTCTAAACTTGTTGAGATCATCATGATCGAAACATGCAGTAATATGACGAGAGTTG

Coding sequence (CDS)

ATGCCACTGGGAAAATATTATTGCGATTACTGCGAGAAGCAATTCCAAGACACTCCTTTCGCTCGAAAACGCCATCTTCAAAGCCTTTCCCATCAGAAAGCCAAAGCTCTCTGGTTCGACTCCTTCAATCAACCTTTCTCTGATTCCTTCCACTTCCGGCGGGGCTTTTGTAATCGGTTCCTCACTACGGGTTTCTGCCAGTACGGTGATTCTTGTAAATATTTTCACCCCAACAACAACAATACTACACACAACTCCACTTCTCACCCCATTGCAAATATTCCGGAAAATAATCAACCCCCAAATATTCCGGTGAATCCATTCGCAGACGGCAGCTCTTTCACTGGTAGTTTAGTTAGCGATAGCATGGGAAGAACATCATGGGGCAATTTACCTCCATCACTGATGCCTCCTCCAGAGGGTGGATACCCACCACTCCCTTTTGTTGATTGGGGATAA

Protein sequence

MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFNQPFSDSFHFRRGFCNRFLTTGFCQYGDSCKYFHPNNNNTTHNSTSHPIANIPENNQPPNIPVNPFADGSSFTGSLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG

Homology

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BLAST of ClCG03G017800.1 vs. Swiss-Prot
Match: C3H3_ORYSJ (Zinc finger CCCH domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=Os01g0252200 PE=2 SV=2)

HSP 1 Score: 168.7 bits (426), Expect = 4.9e-41
Identity = 86/174 (49.43%), Postives = 100/174 (57.47%), Query Frame = 1


Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDS----------------FNQ 60
           MPLGKYYCDYCEKQFQDTP ARKRHL    H +A+ALW+D+                 +Q
Sbjct: 1   MPLGKYYCDYCEKQFQDTPAARKRHLDGAQHHRARALWYDAVRRQELHGGGGGAPPLLHQ 60

Query: 61  PFSDSFHFRRGFCNRFLTTGFCQYGDSCKYFHP-----NNNNTTHNSTSHPIANIPE-NN 120
           P + +     G C  F+ TG C++GDSC+YFHP     N         S P+A       
Sbjct: 61  PGAAAI----GVCQHFVRTGTCKFGDSCRYFHPKPPPANPGPAPSGPVSGPMAQQSNIQG 120

Query: 121 QPPNIPVNPFADGSSFTGSLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 153
             PN      ADGSSF+G+++    G TSWGNLPPSL PPPEGGYPP PFVDWG
Sbjct: 121 SQPNFVGYQAADGSSFSGNILG---GHTSWGNLPPSLRPPPEGGYPPFPFVDWG 167

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BLAST of ClCG03G017800.1 vs. Swiss-Prot
Match: ZMAT5_BOVIN (Zinc finger matrin-type protein 5 OS=Bos taurus GN=ZMAT5 PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.2e-17
Identity = 52/169 (30.77%), Postives = 74/169 (43.79%), Query Frame = 1


Query: 5   KYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFNQPFS---DSFHFRRGFCNRFL 64
           +Y+CDYC++ FQD    RK+HL  L H KAK LW+D F    +   D  + R   C +FL
Sbjct: 4   RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKLWYDMFRDAAAILLDEQNKRP--CRKFL 63

Query: 65  TTGFCQYGDSCKYFHPNNNNTTHNSTS-----------HPIANIPE-------NNQPPNI 124
            TG C +G +C++ H +  +    S               +A +PE         +   +
Sbjct: 64  LTGQCDFGSNCRFSHMSERDLQELSVQVEEERRAREWPLDVAELPEVCLEDWLEKRAKRL 123

Query: 125 PVNPFADGSSFTGSLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 153
              P +       ++    +G      LPPSL  PP GG+P  P V WG
Sbjct: 124 SSAPSSRAEPVRATVFQYPVGWPPVQELPPSLRAPPPGGWPLQPSVQWG 170

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BLAST of ClCG03G017800.1 vs. Swiss-Prot
Match: ZMAT5_MOUSE (Zinc finger matrin-type protein 5 OS=Mus musculus GN=Zmat5 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 9.3e-16
Identity = 51/169 (30.18%), Postives = 75/169 (44.38%), Query Frame = 1


Query: 5   KYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFNQPFS---DSFHFRRGFCNRFL 64
           +Y+CDYC++ FQD    RK+HL  L H KAK +W+D F    +   D  + R   C +FL
Sbjct: 4   RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLDEQNKRP--CRKFL 63

Query: 65  TTGFCQYGDSCKYFHPNNNNTTHNST---------SHPI--ANIPENN-------QPPNI 124
            TG C +G +C++ H +  +    S            P+  A +PE +       +   +
Sbjct: 64  LTGQCDFGSNCRFSHMSEQDLQELSVQVEEERRAREWPLETAELPEGHLEDWLEKRAKRL 123

Query: 125 PVNPFADGSSFTGSLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 153
              P +       ++    +G      LPPSL  PP GG+  L  V WG
Sbjct: 124 SSAPSSRAEPIRTTVFQYPVGWPPMQELPPSLRAPPPGGWSVLSKVQWG 170

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BLAST of ClCG03G017800.1 vs. Swiss-Prot
Match: ZMAT5_HUMAN (Zinc finger matrin-type protein 5 OS=Homo sapiens GN=ZMAT5 PE=1 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 9.3e-16
Identity = 50/169 (29.59%), Postives = 73/169 (43.20%), Query Frame = 1


Query: 5   KYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFNQPFS---DSFHFRRGFCNRFL 64
           +Y+CDYC++ FQD    RK+HL  L H KAK +W+D F    +   D  + R   C +FL
Sbjct: 4   RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLDEQNKRP--CRKFL 63

Query: 65  TTGFCQYGDSCKYFHPNNNNTTHNS--------TSHPIANIPE----------NNQPPNI 124
            TG C +G +C++ H +  +    S            + + PE            +   +
Sbjct: 64  LTGQCDFGSNCRFSHMSERDLQELSIQVEEERRAREWLLDAPELPEGHLEDWLEKRAKRL 123

Query: 125 PVNPFADGSSFTGSLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 153
              P +       ++    +G      LPPSL  PP GG+P  P V WG
Sbjct: 124 SSAPSSRAEPIRTTVFQYPVGWPPVQELPPSLRAPPPGGWPLQPRVQWG 170

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BLAST of ClCG03G017800.1 vs. Swiss-Prot
Match: ZMAT5_DANRE (Zinc finger matrin-type protein 5 OS=Danio rerio GN=zmat5 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-13
Identity = 52/178 (29.21%), Postives = 73/178 (41.01%), Query Frame = 1


Query: 5   KYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFNQPFSDSFHFR-RGFCNRFLTT 64
           +YYCDYC++ FQD    RK+HL  + H +AK  WFD+F    +     R +  C +F+ T
Sbjct: 4   RYYCDYCDRSFQDNLHNRKKHLNGVQHHRAKKAWFDNFRDAATLLNDERSKEVCRKFVQT 63

Query: 65  GFCQYGDSCKYFHPNNNNTTHNSTSHPIANIPENNQPPNIPVNPFADGSSFTG------- 124
           G C +G SC++ H +            I +     + P+       DGSS          
Sbjct: 64  GQCVFGTSCRFSHMSEKQM--KMLEQKIDDEKRQKEDPD------QDGSSERSVDEWLSR 123

Query: 125 ---SLVSDSMGRT-------------------SWGNLPPSLMPPPEGGYPPLPFVDWG 153
               L + + GR                    S  +LPPSL PPP GG+      +WG
Sbjct: 124 REKKLAALTSGRVLRMEEEECTENIEIPPYLLSIPDLPPSLHPPPAGGWRVTVHNEWG 173

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BLAST of ClCG03G017800.1 vs. TrEMBL
Match: A0A0A0M1B0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560650 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 2.7e-70
Identity = 127/157 (80.89%), Postives = 137/157 (87.26%), Query Frame = 1


Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSF---NQPFSDSFHFRRGFC 60
           MPLGKYYCDYC+KQFQDTPFARKRHLQSLSHQKAKALWFDSF   NQ F  SFHFR   C
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRIC 60

Query: 61  NRFLTTGFCQYGDSCKYFHPNNNN-TTHNSTSHPIANIPENNQPPNIPVNPFADG-SSFT 120
           NRFL+TGFCQYGDSCKYFHPNNNN  T+NS+S+P+A  PEN QPPN+PVN F DG SS T
Sbjct: 61  NRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSST 120

Query: 121 GSLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 153
           GSL+SD +G TSWGNLPPSLMPPP+GGYPPLPFVDWG
Sbjct: 121 GSLISDRLG-TSWGNLPPSLMPPPDGGYPPLPFVDWG 156

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BLAST of ClCG03G017800.1 vs. TrEMBL
Match: D7UA82_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g00610 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.6e-51
Identity = 95/153 (62.09%), Postives = 111/153 (72.55%), Query Frame = 1


Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFNQPFS-DSFHFRRGFCNR 60
           MPLGKY+CDYC+KQFQDTP ARKRHLQ L HQ+AKALW+DSF  P    +  + +G CNR
Sbjct: 1   MPLGKYHCDYCDKQFQDTPSARKRHLQGLQHQRAKALWYDSFRDPNQIQAEGYGKGVCNR 60

Query: 61  FLTTGFCQYGDSCKYFHPNNNNTTHNSTSHPIANIPENNQPPNIPVNPFADGSSFTGSLV 120
           F+ TGFCQYGDSCKYFHP  +    N+ S P+   P+N Q  + P N    G    G++V
Sbjct: 61  FVRTGFCQYGDSCKYFHPKQSLQNTNTQSIPVTGFPDNIQSLSNPGNQLVGGGPLPGNVV 120

Query: 121 SDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 153
            DSMG  SWGNLPPSL PPPEGGYPPLPF+DWG
Sbjct: 121 KDSMG-NSWGNLPPSLKPPPEGGYPPLPFLDWG 152

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BLAST of ClCG03G017800.1 vs. TrEMBL
Match: A0A067JTM5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23183 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.2e-46
Identity = 94/158 (59.49%), Postives = 110/158 (69.62%), Query Frame = 1


Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSF-----NQPFSDSFHFRRG 60
           MPLGKYYCDYCEK+FQDT  ARKRHLQS SH +AK+LW+ S      +Q ++D     +G
Sbjct: 1   MPLGKYYCDYCEKEFQDTAIARKRHLQSASHVRAKSLWYASLRSGDPSQTYADG---AKG 60

Query: 61  FCNRFLTTGFCQYGDSCKYFHPNN-NNTTHNSTSHPIANIPENNQPPNIPVNPFADGSSF 120
            CNRF+ TGFC YGDSCKY HPNN NN  +N  +   A + +N Q P IP +    GSS 
Sbjct: 61  ICNRFVKTGFCPYGDSCKYLHPNNSNNLQNNVGTSQAAGLMDNVQSPFIPGSQLVGGSSL 120

Query: 121 TGSLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 153
            G ++ DSMG   WGNLPPSL PPPEGGY PLPFVDWG
Sbjct: 121 PGEMLRDSMG-MPWGNLPPSLKPPPEGGYLPLPFVDWG 154

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BLAST of ClCG03G017800.1 vs. TrEMBL
Match: M5WL08_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016420mg PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.2e-46
Identity = 90/153 (58.82%), Postives = 105/153 (68.63%), Query Frame = 1


Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFNQP-FSDSFHFRRGFCNR 60
           MPLGKYYC+YC+K+FQDTP AR+RHLQ L H +AKA W+DSF  P  + +    +G CNR
Sbjct: 1   MPLGKYYCEYCDKEFQDTPSARRRHLQGLQHLRAKAQWYDSFKDPSHAYTEGLTKGVCNR 60

Query: 61  FLTTGFCQYGDSCKYFHPNNNNTTHNSTSHPIANIPENNQPPNIPVNPFADGSSFTGSLV 120
           F+ TGFC YGDSC+Y HP NN    N  +     + +NNQ      N    GSS    +V
Sbjct: 61  FVKTGFCPYGDSCRYLHPKNNQ--QNMVTQGAPGLIDNNQSSTFQENQLVGGSSLPDVVV 120

Query: 121 SDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 153
            DSMG  SWGNLPPSLMPPPEGGYPPLPFVDWG
Sbjct: 121 RDSMG-MSWGNLPPSLMPPPEGGYPPLPFVDWG 150

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BLAST of ClCG03G017800.1 vs. TrEMBL
Match: B9I6N1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s00620g PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 2.1e-46
Identity = 96/158 (60.76%), Postives = 111/158 (70.25%), Query Frame = 1


Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWF------DSFNQPFSDSFHFRR 60
           MP+GKYYCDYC+KQFQDTP ARKRHLQS SH +AK+LWF      ++ N   +D+  F +
Sbjct: 1   MPVGKYYCDYCDKQFQDTPHARKRHLQSSSHLRAKSLWFSRNSNSNTLNSNNTDAGGFVK 60

Query: 61  GFCNRFLTTGFCQYGDSCKYFHPNNNNTTHNSTSHPIANIPENNQPPNIPVNPFADGSSF 120
           G CNRF+ TGFC YGDSCKY H      T+ +TS   A   +N Q P +P N  A GSSF
Sbjct: 61  GLCNRFVKTGFCPYGDSCKYLH------TNFATSQGTA-FKDNVQSPTMPGNQLAGGSSF 120

Query: 121 TGSLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 153
            G  V +SMG  SWGNLPPSL PPPEGGYPPLPFVDWG
Sbjct: 121 PGVAVRESMG-MSWGNLPPSLKPPPEGGYPPLPFVDWG 150

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BLAST of ClCG03G017800.1 vs. TAIR10
Match: AT5G26749.2 (AT5G26749.2 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 149.4 bits (376), Expect = 1.7e-36
Identity = 79/174 (45.40%), Postives = 94/174 (54.02%), Query Frame = 1


Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFNQPFSD---SFHFRRGFC 60
           MP GKYYCDYCEK+FQDT  ARKRHLQS  H +AKALW+ S +    +   S    +G C
Sbjct: 1   MPSGKYYCDYCEKEFQDTQVARKRHLQSKPHLRAKALWYSSSSSDLVNPQVSNFATKGLC 60

Query: 61  NRFLTT-------------------GFCQYGDSCKYFHPNNNNTTHNSTSHPIANIPENN 120
           NRF+T+                    FC +GDSC+YFHPNNN  +   T++    +   N
Sbjct: 61  NRFITSVRRIDFVSLCSSFLAISGCNFCPFGDSCRYFHPNNNTGSTGFTNNTQLRVDMLN 120

Query: 121 QPPNIPVNPFADGSSFTGSLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 153
           Q           GS+     VS   G T W +LPPSL PPPE GYP LPF+DWG
Sbjct: 121 Q-------QHIQGSTLNRDFVSGRPG-TGWFDLPPSLKPPPEQGYPQLPFIDWG 166

[Close]

BLAST of ClCG03G017800.1 vs. NCBI nr
Match: gi|659099282|ref|XP_008450521.1| (PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis melo])

HSP 1 Score: 276.9 bits (707), Expect = 2.0e-71
Identity = 130/158 (82.28%), Postives = 137/158 (86.71%), Query Frame = 1


Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSF---NQPFSDSFHFRRGFC 60
           MPLGKYYCDYC+KQFQDTPFARKRHLQSLSHQKAKALWFDSF   NQ F  SFHFR   C
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRIC 60

Query: 61  NRFLTTGFCQYGDSCKYFHP--NNNNTTHNSTSHPIANIPENNQPPNIPVNPFADG-SSF 120
           NRFL+TGFCQYGDSCKYFHP  N+N+ THNS+SHPIA  PENNQPPN+P N F DG SS 
Sbjct: 61  NRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFPENNQPPNVPFNRFVDGNSSS 120

Query: 121 TGSLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 153
           TGSLVSD +G TSWGNLPPSLMPPPEGGYPPLPFVDWG
Sbjct: 121 TGSLVSDRLG-TSWGNLPPSLMPPPEGGYPPLPFVDWG 157

[Close]

BLAST of ClCG03G017800.1 vs. NCBI nr
Match: gi|449435572|ref|XP_004135569.1| (PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis sativus])

HSP 1 Score: 272.7 bits (696), Expect = 3.9e-70
Identity = 127/157 (80.89%), Postives = 137/157 (87.26%), Query Frame = 1


Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSF---NQPFSDSFHFRRGFC 60
           MPLGKYYCDYC+KQFQDTPFARKRHLQSLSHQKAKALWFDSF   NQ F  SFHFR   C
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRIC 60

Query: 61  NRFLTTGFCQYGDSCKYFHPNNNN-TTHNSTSHPIANIPENNQPPNIPVNPFADG-SSFT 120
           NRFL+TGFCQYGDSCKYFHPNNNN  T+NS+S+P+A  PEN QPPN+PVN F DG SS T
Sbjct: 61  NRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSST 120

Query: 121 GSLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 153
           GSL+SD +G TSWGNLPPSLMPPP+GGYPPLPFVDWG
Sbjct: 121 GSLISDRLG-TSWGNLPPSLMPPPDGGYPPLPFVDWG 156

[Close]

BLAST of ClCG03G017800.1 vs. NCBI nr
Match: gi|731415967|ref|XP_010659728.1| (PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X1 [Vitis vinifera])

HSP 1 Score: 210.3 bits (534), Expect = 2.4e-51
Identity = 95/153 (62.09%), Postives = 111/153 (72.55%), Query Frame = 1


Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFNQPFS-DSFHFRRGFCNR 60
           MPLGKY+CDYC+KQFQDTP ARKRHLQ L HQ+AKALW+DSF  P    +  + +G CNR
Sbjct: 1   MPLGKYHCDYCDKQFQDTPSARKRHLQGLQHQRAKALWYDSFRDPNQIQAEGYGKGVCNR 60

Query: 61  FLTTGFCQYGDSCKYFHPNNNNTTHNSTSHPIANIPENNQPPNIPVNPFADGSSFTGSLV 120
           F+ TGFCQYGDSCKYFHP  +    N+ S P+   P+N Q  + P N    G    G++V
Sbjct: 61  FVRTGFCQYGDSCKYFHPKQSLQNTNTQSIPVTGFPDNIQSLSNPGNQLVGGGPLPGNVV 120

Query: 121 SDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 153
            DSMG  SWGNLPPSL PPPEGGYPPLPF+DWG
Sbjct: 121 KDSMG-NSWGNLPPSLKPPPEGGYPPLPFLDWG 152

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BLAST of ClCG03G017800.1 vs. NCBI nr
Match: gi|470132887|ref|XP_004302306.1| (PREDICTED: zinc finger CCCH domain-containing protein 3 [Fragaria vesca subsp. vesca])

HSP 1 Score: 202.6 bits (514), Expect = 4.9e-49
Identity = 95/154 (61.69%), Postives = 112/154 (72.73%), Query Frame = 1


Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFNQPFSDSF--HFRRGFCN 60
           MPLGKY C+YC KQFQDTP+AR+RHLQSL H +AKA WFDSF  P +D++     RG CN
Sbjct: 1   MPLGKYDCEYCNKQFQDTPYARRRHLQSLQHLRAKAQWFDSFKDP-NDAYAQSLGRGVCN 60

Query: 61  RFLTTGFCQYGDSCKYFHPNNNNTTHNSTSHPIANIPENNQPPNIPVNPFADGSSFTGSL 120
           RF+ TGFCQYGD+CKYFHP NN    N+ +   + + +N+Q   I  N    GSS    +
Sbjct: 61  RFVNTGFCQYGDACKYFHPKNNQ--QNTITQGASGVTDNSQSSTIQGNQMVAGSSLPDVV 120

Query: 121 VSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 153
           V D+MG  SWGNLPPSLMPPPEGGYPPLPFVDWG
Sbjct: 121 VRDNMG-MSWGNLPPSLMPPPEGGYPPLPFVDWG 150

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BLAST of ClCG03G017800.1 vs. NCBI nr
Match: gi|802755253|ref|XP_012088844.1| (PREDICTED: zinc finger CCCH domain-containing protein 3 [Jatropha curcas])

HSP 1 Score: 194.1 bits (492), Expect = 1.7e-46
Identity = 94/158 (59.49%), Postives = 110/158 (69.62%), Query Frame = 1


Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSF-----NQPFSDSFHFRRG 60
           MPLGKYYCDYCEK+FQDT  ARKRHLQS SH +AK+LW+ S      +Q ++D     +G
Sbjct: 1   MPLGKYYCDYCEKEFQDTAIARKRHLQSASHVRAKSLWYASLRSGDPSQTYADG---AKG 60

Query: 61  FCNRFLTTGFCQYGDSCKYFHPNN-NNTTHNSTSHPIANIPENNQPPNIPVNPFADGSSF 120
            CNRF+ TGFC YGDSCKY HPNN NN  +N  +   A + +N Q P IP +    GSS 
Sbjct: 61  ICNRFVKTGFCPYGDSCKYLHPNNSNNLQNNVGTSQAAGLMDNVQSPFIPGSQLVGGSSL 120

Query: 121 TGSLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 153
            G ++ DSMG   WGNLPPSL PPPEGGY PLPFVDWG
Sbjct: 121 PGEMLRDSMG-MPWGNLPPSLKPPPEGGYLPLPFVDWG 154

The following BLAST results are available for this feature:

BLAST of ClCG03G017800.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
C3H3_ORYSJ	4.9e-41	49.43	Zinc finger CCCH domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=...	[more]
ZMAT5_BOVIN	2.2e-17	30.77	Zinc finger matrin-type protein 5 OS=Bos taurus GN=ZMAT5 PE=2 SV=1	[more]
ZMAT5_MOUSE	9.3e-16	30.18	Zinc finger matrin-type protein 5 OS=Mus musculus GN=Zmat5 PE=2 SV=1	[more]
ZMAT5_HUMAN	9.3e-16	29.59	Zinc finger matrin-type protein 5 OS=Homo sapiens GN=ZMAT5 PE=1 SV=1	[more]
ZMAT5_DANRE	1.1e-13	29.21	Zinc finger matrin-type protein 5 OS=Danio rerio GN=zmat5 PE=2 SV=1	[more]

BLAST of ClCG03G017800.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M1B0_CUCSA	2.7e-70	80.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560650 PE=4 SV=1	[more]
D7UA82_VITVI	1.6e-51	62.09	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g00610 PE=4 SV=...	[more]
A0A067JTM5_JATCU	1.2e-46	59.49	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23183 PE=4 SV=1	[more]
M5WL08_PRUPE	1.2e-46	58.82	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016420mg PE=4 SV=1	[more]
B9I6N1_POPTR	2.1e-46	60.76	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s00620g PE=4 SV=1	[more]

BLAST of ClCG03G017800.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G26749.2	1.7e-36	45.40	C2H2 and C2HC zinc fingers superfamily protein	[more]

BLAST of ClCG03G017800.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659099282\|ref\|XP_008450521.1\|	2.0e-71	82.28	PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis melo]	[more]
gi\|449435572\|ref\|XP_004135569.1\|	3.9e-70	80.89	PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis sativus]	[more]
gi\|731415967\|ref\|XP_010659728.1\|	2.4e-51	62.09	PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X1 [Vitis vinife...	[more]
gi\|470132887\|ref\|XP_004302306.1\|	4.9e-49	61.69	PREDICTED: zinc finger CCCH domain-containing protein 3 [Fragaria vesca subsp. v...	[more]
gi\|802755253\|ref\|XP_012088844.1\|	1.7e-46	59.49	PREDICTED: zinc finger CCCH domain-containing protein 3 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000571	Znf_CCCH
IPR003604	Matrin/U1-like-C_Znf_C2H2
IPR013085	U1-CZ_Znf_C2H2

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding
GO:0003676	nucleic acid binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG03G017800	ClCG03G017800	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG03G017800.1	ClCG03G017800.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG03G017800.1.three_prime_UTR1	ClCG03G017800.1.three_prime_UTR1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG03G017800.1.cds3	ClCG03G017800.1.cds3	CDS
ClCG03G017800.1.cds2	ClCG03G017800.1.cds2	CDS
ClCG03G017800.1.cds1	ClCG03G017800.1.cds1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG03G017800.1.five_prime_UTR1	ClCG03G017800.1.five_prime_UTR1	five_prime_UTR

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	GENE3D	G3DSA:4.10.1000.10		coord: 56..77 score: 1.
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 57..77 score: 2.
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 53..78 score: 0
IPR000571	Zinc finger, CCCH-type	PROFILE	PS50103	ZF_C3H1	coord: 52..79 score: 12
IPR000571	Zinc finger, CCCH-type	unknown	SSF90229	CCCH zinc finger	coord: 50..79 score: 9.9
IPR003604	Zinc finger, U1-type	SMART	SM00451	ZnF_U1_5	coord: 3..38 score: 1.
IPR013085	Zinc finger, U1-C type	PFAM	PF06220	zf-U1	coord: 5..36 score: 3.
None	No IPR available	PANTHER	PTHR16465	NUCLEASE-RELATED	coord: 2..152 score: 3.0
None	No IPR available	unknown	SSF57667	beta-beta-alpha zinc fingers	coord: 4..46 score: 1.45