Csa1G560650 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G560650
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionPutative zinc finger/matrin type 5; contains IPR000571 (Zinc finger, CCCH-type), IPR003604 (Zinc finger, U1-type), IPR013085 (Zinc finger, U1-C type)
LocationChr1 : 20324452 .. 20326990 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAAAAACAAATAGAATTTAGAAATTGTGGGGGAAAAAGCATAAGATAGATTGGAGGAGAAATTGATCGGAAACAGAAAGGCTTTAAAGAAAGCTTTGGAACGACGAAGAAGAAGGCTGAAGGAATCGAAGAAGAAGATGCCATTGGGAAAATATTATTGCGACTACTGCGATAAGCAATTTCAAGACACTCCCTTTGCTCGAAAACGCCATCTTCAAAGTCTCTCTCATCAGAAGGCCAAAGCTCTTTGGTTCGACTCCTTCAAAGGTCCAACACTGCATCTCCTCTCTTCTTTCTCCATTTTCTCCTCATTTCCCCCCCTCAATTCTTCCTTTTTCCCTTGCAGATTTCAATCAATCTTTCCCTCATTCCTTCCACTTCCGACCACGCATCTGTAATCGATTCCTCTCTACGGTAATTCTCAATTCTTCTTCTTCTCTTCCCTTCGCATCGTCATCCATTTTCTTTTAACCTAATTTTTGCTTCTTCTTCTTCTTCATTTCAAAGGGGTTTTGCCAATACGGCGATTCTTGTAAATATTTTCACCCCAATAACAACAATGACAATACGTACAACTCCAGTTCCTACCCTATGGCAGGTATCCCGAAATTTATTTTCGTTTTCCATCCATTTCCTGTCTAATTTTGAATCTAATTCACAGGTTTCCCGGAAAATTATCAACCCCCAAATGTTCCGGTTAATCGATTTGTAGACGGCAACTCTTCTTCCACAGGTAATTTTAAAGTGAACTTGTTGCTGGTTATTTTTGACAGCTTTATGTGTTCCACATTTTATTTGTTTATTTATTATTGCCATAAGAAACAGCCGTGTATTTGCTTATTCATAGCAACCATTCATCTTCATTGATCGATTTTGAACAGCTCTACATATTGTTTGGCAACCAGGTTTATATTTTTAGTTTTTGAAAATTAACCATCTAAAACACTAATCCACCTCTAAGTTCCTTGCTTTATTGTATAGTTCCTACCAATGTTTTAAAAAATCAGGCCAAGTTGTGAAACTTAAAAAAATTTGCTTTTATCTTTAGAATTAGCTAAAAATTCAACTCTTTTACCCAATAAAAGATGGTATGAGTGTTGTAAGAATTATAGAGAACATGGACTTAATTTTCATGAAACTAAAACTAAATTGTTACCAACCCAGTGTTCAGGTTTCTGTTCCTTACATTAGTTCATAATCTTTATCTTCAGGTAGTTTAATTAGCGATAGACTGGGAACATCATGGGGAAATTTACCTCCATCACTGATGCCTCCTCCAGACGGTGGATACCCACCTCTTCCTTTCGTAGATTGGGGATAATCCATCAAGATCAGCTATTTGTTCAACTCTCATCAGTTCTCTGGTTTCTGGGATGTGCTACTCTATTTATGCGGAAATTTTGTACAAATTTGTTGTCTTCAACATCGAGCAAATGTGCTTTTCTCTTGTTCCCCCTTCGGGTACGAATTACAACCCATAAATGTGTTTTCAACTTTCATCTTATGTTAATCTTAAAGTATTTAGTTGCATGTGTTATTATAGCTCAGGTTGATACGTCATGATATATTGAGTTTATGGTGCTCTAAACTTGTTCAGATCATCATGATAGAATGATATATGGTATATTAGTAATACGACGATGAAGAAACTAAGGAAAACACCTGATTCTGAGACTCTTTCTTCACTAGCAAATTTAACTTTTCATTCATAAATCAGGCATGGGAGGCTTCAAATGTTATTGATGTCGACAAGTAGGTGAAATCATCTAAAGATAAGTATGAAGAACATTTGAATGCACGTTTTTGAATACATACATTGGCCCCTAAAGCATATTATTATTTCTTTTATTCAAGCATCTTGACAAACAAGCATCACCCCAATACATCCTCCTATACATTGGTAACCTAATAACTTGAAGATGCAAGTACTTCTAACAAGGAAGCAATAAATTGCATCTGGGTCTCTTCATCTATAGTTAAGAAGAGAGGAACATGAACAAATAGTGATTTGATGCCGTTCTCTTCTGCTTGGCGGAGGGAATGGTAGTAGACATAATTGCACACGAACCGACCAGCATCATCTGAAGTCATCACTTCGTATCCCTTCTTTGCCAGTGTCTTCGTTATTTCCTCCACTGGAAGAGAGGTCTGCAGGCAGAGTTGGGTAAGAAATCAGGAAGAGGAAATGATTTGCATAAAAATTTAAGGATCAATGGATGTAAATGAACCAACAAGGTTCTATAATTTCTACAATCAAATCTTATGCCATCTTCATGTGTACAAGTAATGGAATTTACTATATGGTTTGTAACCTGCCCGGAAAAGATTTAATTTGTTAAAATGTTTTGATGAACCAACTTCAGAAGAATAATATACACATCACACAACAGGGACACCAGCTTCGTATTTCTCAAATACACAAACATCGTCCTGAATGGCTTGACATTTTAACAGAAAGAACTAATCAGTGGTGTTATACTTGTATCTGAATCATTCTAAATTTTCTCCAATATATCTTTTAAAGTGTCGATCAATTTAT

mRNA sequence

ATGCCATTGGGAAAATATTATTGCGACTACTGCGATAAGCAATTTCAAGACACTCCCTTTGCTCGAAAACGCCATCTTCAAAGTCTCTCTCATCAGAAGGCCAAAGCTCTTTGGTTCGACTCCTTCAAAGATTTCAATCAATCTTTCCCTCATTCCTTCCACTTCCGACCACGCATCTGTAATCGATTCCTCTCTACGGGGTTTTGCCAATACGGCGATTCTTGTAAATATTTTCACCCCAATAACAACAATGACAATACGTACAACTCCAGTTCCTACCCTATGGCAGGTTTCCCGGAAAATTATCAACCCCCAAATGTTCCGGTTAATCGATTTGTAGACGGCAACTCTTCTTCCACAGGTAGTTTAATTAGCGATAGACTGGGAACATCATGGGGAAATTTACCTCCATCACTGATGCCTCCTCCAGACGGTGGATACCCACCTCTTCCTTTCGTAGATTGGGGATAA

Coding sequence (CDS)

ATGCCATTGGGAAAATATTATTGCGACTACTGCGATAAGCAATTTCAAGACACTCCCTTTGCTCGAAAACGCCATCTTCAAAGTCTCTCTCATCAGAAGGCCAAAGCTCTTTGGTTCGACTCCTTCAAAGATTTCAATCAATCTTTCCCTCATTCCTTCCACTTCCGACCACGCATCTGTAATCGATTCCTCTCTACGGGGTTTTGCCAATACGGCGATTCTTGTAAATATTTTCACCCCAATAACAACAATGACAATACGTACAACTCCAGTTCCTACCCTATGGCAGGTTTCCCGGAAAATTATCAACCCCCAAATGTTCCGGTTAATCGATTTGTAGACGGCAACTCTTCTTCCACAGGTAGTTTAATTAGCGATAGACTGGGAACATCATGGGGAAATTTACCTCCATCACTGATGCCTCCTCCAGACGGTGGATACCCACCTCTTCCTTTCGTAGATTGGGGATAA

Protein sequence

MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSSTGSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG*
Homology
[Close]
BLAST of Csa1G560650 vs. Swiss-Prot
Match: C3H3_ORYSJ (Zinc finger CCCH domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=Os01g0252200 PE=2 SV=2)

HSP 1 Score: 156.4 bits (394), Expect = 2.6e-37
Identity = 83/171 (48.54%), Postives = 102/171 (59.65%), Query Frame = 1 

Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFK-----DFNQSFPHSFHF 60
           MPLGKYYCDYC+KQFQDTP ARKRHL    H +A+ALW+D+ +           P   H 
Sbjct: 1   MPLGKYYCDYCEKQFQDTPAARKRHLDGAQHHRARALWYDAVRRQELHGGGGGAPPLLH- 60

Query: 61  RP-----RICNRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAG---FPENYQ--PP 120
           +P      +C  F+ TG C++GDSC+YFHP     N   + S P++G      N Q   P
Sbjct: 61  QPGAAAIGVCQHFVRTGTCKFGDSCRYFHPKPPPANPGPAPSGPVSGPMAQQSNIQGSQP 120

Query: 121 NVPVNRFVDGNSSSTGSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 157
           N    +  DG SS +G+++     TSWGNLPPSL PPP+GGYPP PFVDWG
Sbjct: 121 NFVGYQAADG-SSFSGNILGGH--TSWGNLPPSLRPPPEGGYPPFPFVDWG 167

[Close]
BLAST of Csa1G560650 vs. Swiss-Prot
Match: ZMAT5_BOVIN (Zinc finger matrin-type protein 5 OS=Bos taurus GN=ZMAT5 PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 9.3e-19
Identity = 55/173 (31.79%), Postives = 79/173 (45.66%), Query Frame = 1 

Query: 5   KYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRICNRFL 64
           +Y+CDYCD+ FQD    RK+HL  L H KAK LW+D F+D         + RP  C +FL
Sbjct: 4   RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKLWYDMFRDAAAILLDEQNKRP--CRKFL 63

Query: 65  STGFCQYGDSCKYFHPNNNN--------DNTYNSSSYPMAGFPENYQPPNVPVNRFVDGN 124
            TG C +G +C++ H +  +        +    +  +P+    +  + P V +  +++  
Sbjct: 64  LTGQCDFGSNCRFSHMSERDLQELSVQVEEERRAREWPL----DVAELPEVCLEDWLEKR 123

Query: 125 SSSTGSLISDR----------LGTSW---GNLPPSLMPPPDGGYPPLPFVDWG 157
           +    S  S R              W     LPPSL  PP GG+P  P V WG
Sbjct: 124 AKRLSSAPSSRAEPVRATVFQYPVGWPPVQELPPSLRAPPPGGWPLQPSVQWG 170

[Close]
BLAST of Csa1G560650 vs. Swiss-Prot
Match: ZMAT5_HUMAN (Zinc finger matrin-type protein 5 OS=Homo sapiens GN=ZMAT5 PE=1 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.3e-17
Identity = 56/169 (33.14%), Postives = 76/169 (44.97%), Query Frame = 1 

Query: 5   KYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRICNRFL 64
           +Y+CDYCD+ FQD    RK+HL  L H KAK +W+D F+D         + RP  C +FL
Sbjct: 4   RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLDEQNKRP--CRKFL 63

Query: 65  STGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPE-NYQPPNVPVNRFVD------GNS 124
            TG C +G +C++ H +  +    +          E     P +P     D         
Sbjct: 64  LTGQCDFGSNCRFSHMSERDLQELSIQVEEERRAREWLLDAPELPEGHLEDWLEKRAKRL 123

Query: 125 SSTGSLISDRLGTS-------W---GNLPPSLMPPPDGGYPPLPFVDWG 157
           SS  S  ++ + T+       W     LPPSL  PP GG+P  P V WG
Sbjct: 124 SSAPSSRAEPIRTTVFQYPVGWPPVQELPPSLRAPPPGGWPLQPRVQWG 170

[Close]
BLAST of Csa1G560650 vs. Swiss-Prot
Match: ZMAT5_MOUSE (Zinc finger matrin-type protein 5 OS=Mus musculus GN=Zmat5 PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.0e-17
Identity = 53/173 (30.64%), Postives = 77/173 (44.51%), Query Frame = 1 

Query: 5   KYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRICNRFL 64
           +Y+CDYCD+ FQD    RK+HL  L H KAK +W+D F+D         + RP  C +FL
Sbjct: 4   RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLDEQNKRP--CRKFL 63

Query: 65  STGFCQYGDSCKYFHPNNNN--------DNTYNSSSYPMAGFPENYQPPNVPVNRFVDGN 124
            TG C +G +C++ H +  +        +    +  +P+    E  + P   +  +++  
Sbjct: 64  LTGQCDFGSNCRFSHMSEQDLQELSVQVEEERRAREWPL----ETAELPEGHLEDWLEKR 123

Query: 125 SSSTGSLISDR----------LGTSW---GNLPPSLMPPPDGGYPPLPFVDWG 157
           +    S  S R              W     LPPSL  PP GG+  L  V WG
Sbjct: 124 AKRLSSAPSSRAEPIRTTVFQYPVGWPPMQELPPSLRAPPPGGWSVLSKVQWG 170

[Close]
BLAST of Csa1G560650 vs. Swiss-Prot
Match: ZMAT5_DANRE (Zinc finger matrin-type protein 5 OS=Danio rerio GN=zmat5 PE=2 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.8e-15
Identity = 49/172 (28.49%), Postives = 71/172 (41.28%), Query Frame = 1 

Query: 5   KYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRICNRFL 64
           +YYCDYCD+ FQD    RK+HL  + H +AK  WFD+F+D       +      +C +F+
Sbjct: 4   RYYCDYCDRSFQDNLHNRKKHLNGVQHHRAKKAWFDNFRDAATLL--NDERSKEVCRKFV 63

Query: 65  STGFCQYGDSCKYFHPNNNNDNTYN---SSSYPMAGFPENYQPPNVPVNRFVDGNSSSTG 124
            TG C +G SC++ H +                    P+        V+ ++        
Sbjct: 64  QTGQCVFGTSCRFSHMSEKQMKMLEQKIDDEKRQKEDPDQDGSSERSVDEWLSRREKKLA 123

Query: 125 SLISDRL-----------------GTSWGNLPPSLMPPPDGGYPPLPFVDWG 157
           +L S R+                   S  +LPPSL PPP GG+      +WG
Sbjct: 124 ALTSGRVLRMEEEECTENIEIPPYLLSIPDLPPSLHPPPAGGWRVTVHNEWG 173

[Close]
BLAST of Csa1G560650 vs. TrEMBL
Match: A0A0A0M1B0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560650 PE=4 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 8.0e-94
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 1 

Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRIC 60
           MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRIC
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRIC 60

Query: 61  NRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSST 120
           NRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSST
Sbjct: 61  NRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSST 120

Query: 121 GSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 157
           GSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG
Sbjct: 121 GSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 156

[Close]
BLAST of Csa1G560650 vs. TrEMBL
Match: D7UA82_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g00610 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 3.1e-53
Identity = 98/156 (62.82%), Postives = 118/156 (75.64%), Query Frame = 1 

Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRIC 60
           MPLGKY+CDYCDKQFQDTP ARKRHLQ L HQ+AKALW+DSF+D NQ    +  +   +C
Sbjct: 1   MPLGKYHCDYCDKQFQDTPSARKRHLQGLQHQRAKALWYDSFRDPNQI--QAEGYGKGVC 60

Query: 61  NRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSST 120
           NRF+ TGFCQYGDSCKYFHP  +  NT N+ S P+ GFP+N Q  + P N+ V G     
Sbjct: 61  NRFVRTGFCQYGDSCKYFHPKQSLQNT-NTQSIPVTGFPDNIQSLSNPGNQLV-GGGPLP 120

Query: 121 GSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 157
           G+++ D +G SWGNLPPSL PPP+GGYPPLPF+DWG
Sbjct: 121 GNVVKDSMGNSWGNLPPSLKPPPEGGYPPLPFLDWG 152

[Close]
BLAST of Csa1G560650 vs. TrEMBL
Match: V4SWC1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012993mg PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 3.3e-47
Identity = 89/158 (56.33%), Postives = 110/158 (69.62%), Query Frame = 1 

Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPR-I 60
           MPLGKYYCDYCDKQFQDT FARKRHLQ + H +AKALW+DS  + NQ++P  F   P+ +
Sbjct: 1   MPLGKYYCDYCDKQFQDTYFARKRHLQGIQHLRAKALWYDSLNETNQTYPDGF---PKGV 60

Query: 61  CNRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPE-NYQPPNVPVNRFVDGNSS 120
           C+RF+ TGFC +GDSCKY HP NN      +      GF + N +  +V    ++ G SS
Sbjct: 61  CSRFVKTGFCPFGDSCKYLHPKNNPPQNSGNQGLRATGFTDINARSSSVDQRIYLAGGSS 120

Query: 121 STGSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 157
             G ++ D +G SWGNLPPSL PPP+GGYP LPFVDWG
Sbjct: 121 FPGDMMRDSMGMSWGNLPPSLKPPPEGGYPLLPFVDWG 155

[Close]
BLAST of Csa1G560650 vs. TrEMBL
Match: A0A067JTM5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23183 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 2.8e-46
Identity = 89/156 (57.05%), Postives = 111/156 (71.15%), Query Frame = 1 

Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRIC 60
           MPLGKYYCDYC+K+FQDT  ARKRHLQS SH +AK+LW+ S +  + S  ++   +  IC
Sbjct: 1   MPLGKYYCDYCEKEFQDTAIARKRHLQSASHVRAKSLWYASLRSGDPSQTYADGAK-GIC 60

Query: 61  NRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSST 120
           NRF+ TGFC YGDSCKY HPNN+N+   N  +   AG  +N Q P +P ++ V G SS  
Sbjct: 61  NRFVKTGFCPYGDSCKYLHPNNSNNLQNNVGTSQAAGLMDNVQSPFIPGSQLV-GGSSLP 120

Query: 121 GSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 157
           G ++ D +G  WGNLPPSL PPP+GGY PLPFVDWG
Sbjct: 121 GEMLRDSMGMPWGNLPPSLKPPPEGGYLPLPFVDWG 154

[Close]
BLAST of Csa1G560650 vs. TrEMBL
Match: M5WL08_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016420mg PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 2.8e-46
Identity = 88/156 (56.41%), Postives = 106/156 (67.95%), Query Frame = 1 

Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRIC 60
           MPLGKYYC+YCDK+FQDTP AR+RHLQ L H +AKA W+DSFKD + ++         +C
Sbjct: 1   MPLGKYYCEYCDKEFQDTPSARRRHLQGLQHLRAKAQWYDSFKDPSHAYTEG--LTKGVC 60

Query: 61  NRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSST 120
           NRF+ TGFC YGDSC+Y HP NN  N     +    G  +N Q      N+ V G SS  
Sbjct: 61  NRFVKTGFCPYGDSCRYLHPKNNQQNMVTQGA---PGLIDNNQSSTFQENQLV-GGSSLP 120

Query: 121 GSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 157
             ++ D +G SWGNLPPSLMPPP+GGYPPLPFVDWG
Sbjct: 121 DVVVRDSMGMSWGNLPPSLMPPPEGGYPPLPFVDWG 150

[Close]
BLAST of Csa1G560650 vs. TAIR10
Match: AT5G26749.2 (AT5G26749.2 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 147.5 bits (371), Expect = 6.8e-36
Identity = 78/176 (44.32%), Postives = 97/176 (55.11%), Query Frame = 1 

Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPR-I 60
           MP GKYYCDYC+K+FQDT  ARKRHLQS  H +AKALW+ S    +   P   +F  + +
Sbjct: 1   MPSGKYYCDYCEKEFQDTQVARKRHLQSKPHLRAKALWYSS-SSSDLVNPQVSNFATKGL 60

Query: 61  CNRFLST-------------------GFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPE 120
           CNRF+++                    FC +GDSC+YFHPNNN  +T         GF  
Sbjct: 61  CNRFITSVRRIDFVSLCSSFLAISGCNFCPFGDSCRYFHPNNNTGST---------GFTN 120

Query: 121 NYQPPNVPVNRFVDGNSSSTGSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 157
           N Q     +N+     S+     +S R GT W +LPPSL PPP+ GYP LPF+DWG
Sbjct: 121 NTQLRVDMLNQQHIQGSTLNRDFVSGRPGTGWFDLPPSLKPPPEQGYPQLPFIDWG 166

[Close]
BLAST of Csa1G560650 vs. NCBI nr
Match: gi|449435572|ref|XP_004135569.1| (PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis sativus])

HSP 1 Score: 350.9 bits (899), Expect = 1.2e-93
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 1 

Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRIC 60
           MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRIC
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRIC 60

Query: 61  NRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSST 120
           NRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSST
Sbjct: 61  NRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSST 120

Query: 121 GSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 157
           GSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG
Sbjct: 121 GSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 156

[Close]
BLAST of Csa1G560650 vs. NCBI nr
Match: gi|659099282|ref|XP_008450521.1| (PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis melo])

HSP 1 Score: 327.4 bits (838), Expect = 1.4e-86
Identity = 146/157 (92.99%), Postives = 153/157 (97.45%), Query Frame = 1 

Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRIC 60
           MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKD NQ+FPHSFHFRPRIC
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRIC 60

Query: 61  NRFLSTGFCQYGDSCKYFHP-NNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSS 120
           NRFLSTGFCQYGDSCKYFHP NN+NDNT+NSSS+P+AGFPEN QPPNVP NRFVDGNSSS
Sbjct: 61  NRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFPENNQPPNVPFNRFVDGNSSS 120

Query: 121 TGSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 157
           TGSL+SDRLGTSWGNLPPSLMPPP+GGYPPLPFVDWG
Sbjct: 121 TGSLVSDRLGTSWGNLPPSLMPPPEGGYPPLPFVDWG 157

[Close]
BLAST of Csa1G560650 vs. NCBI nr
Match: gi|731415967|ref|XP_010659728.1| (PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X1 [Vitis vinifera])

HSP 1 Score: 216.1 bits (549), Expect = 4.4e-53
Identity = 98/156 (62.82%), Postives = 118/156 (75.64%), Query Frame = 1 

Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRIC 60
           MPLGKY+CDYCDKQFQDTP ARKRHLQ L HQ+AKALW+DSF+D NQ    +  +   +C
Sbjct: 1   MPLGKYHCDYCDKQFQDTPSARKRHLQGLQHQRAKALWYDSFRDPNQI--QAEGYGKGVC 60

Query: 61  NRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSST 120
           NRF+ TGFCQYGDSCKYFHP  +  NT N+ S P+ GFP+N Q  + P N+ V G     
Sbjct: 61  NRFVRTGFCQYGDSCKYFHPKQSLQNT-NTQSIPVTGFPDNIQSLSNPGNQLV-GGGPLP 120

Query: 121 GSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 157
           G+++ D +G SWGNLPPSL PPP+GGYPPLPF+DWG
Sbjct: 121 GNVVKDSMGNSWGNLPPSLKPPPEGGYPPLPFLDWG 152

[Close]
BLAST of Csa1G560650 vs. NCBI nr
Match: gi|470132887|ref|XP_004302306.1| (PREDICTED: zinc finger CCCH domain-containing protein 3 [Fragaria vesca subsp. vesca])

HSP 1 Score: 204.9 bits (520), Expect = 1.0e-49
Identity = 94/156 (60.26%), Postives = 114/156 (73.08%), Query Frame = 1 

Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRIC 60
           MPLGKY C+YC+KQFQDTP+AR+RHLQSL H +AKA WFDSFKD N ++  S      +C
Sbjct: 1   MPLGKYDCEYCNKQFQDTPYARRRHLQSLQHLRAKAQWFDSFKDPNDAYAQS--LGRGVC 60

Query: 61  NRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSST 120
           NRF++TGFCQYGD+CKYFHP NN  NT    +   +G  +N Q   +  N+ V G SS  
Sbjct: 61  NRFVNTGFCQYGDACKYFHPKNNQQNTITQGA---SGVTDNSQSSTIQGNQMVAG-SSLP 120

Query: 121 GSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 157
             ++ D +G SWGNLPPSLMPPP+GGYPPLPFVDWG
Sbjct: 121 DVVVRDNMGMSWGNLPPSLMPPPEGGYPPLPFVDWG 150

[Close]
BLAST of Csa1G560650 vs. NCBI nr
Match: gi|567871303|ref|XP_006428241.1| (hypothetical protein CICLE_v10012993mg [Citrus clementina])

HSP 1 Score: 196.1 bits (497), Expect = 4.7e-47
Identity = 89/158 (56.33%), Postives = 110/158 (69.62%), Query Frame = 1 

Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPR-I 60
           MPLGKYYCDYCDKQFQDT FARKRHLQ + H +AKALW+DS  + NQ++P  F   P+ +
Sbjct: 1   MPLGKYYCDYCDKQFQDTYFARKRHLQGIQHLRAKALWYDSLNETNQTYPDGF---PKGV 60

Query: 61  CNRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPE-NYQPPNVPVNRFVDGNSS 120
           C+RF+ TGFC +GDSCKY HP NN      +      GF + N +  +V    ++ G SS
Sbjct: 61  CSRFVKTGFCPFGDSCKYLHPKNNPPQNSGNQGLRATGFTDINARSSSVDQRIYLAGGSS 120

Query: 121 STGSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 157
             G ++ D +G SWGNLPPSL PPP+GGYP LPFVDWG
Sbjct: 121 FPGDMMRDSMGMSWGNLPPSLKPPPEGGYPLLPFVDWG 155

The following BLAST results are available for this feature:
BLAST of Csa1G560650 vs. Swiss-Prot
Match NameE-valueIdentityDescription
C3H3_ORYSJ2.6e-3748.54Zinc finger CCCH domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=... [more]
ZMAT5_BOVIN9.3e-1931.79Zinc finger matrin-type protein 5 OS=Bos taurus GN=ZMAT5 PE=2 SV=1[more]
ZMAT5_HUMAN2.3e-1733.14Zinc finger matrin-type protein 5 OS=Homo sapiens GN=ZMAT5 PE=1 SV=1[more]
ZMAT5_MOUSE3.0e-1730.64Zinc finger matrin-type protein 5 OS=Mus musculus GN=Zmat5 PE=2 SV=1[more]
ZMAT5_DANRE2.8e-1528.49Zinc finger matrin-type protein 5 OS=Danio rerio GN=zmat5 PE=2 SV=1[more]
BLAST of Csa1G560650 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M1B0_CUCSA8.0e-94100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560650 PE=4 SV=1[more]
D7UA82_VITVI3.1e-5362.82Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g00610 PE=4 SV=... [more]
V4SWC1_9ROSI3.3e-4756.33Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012993mg PE=4 SV=1[more]
A0A067JTM5_JATCU2.8e-4657.05Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23183 PE=4 SV=1[more]
M5WL08_PRUPE2.8e-4656.41Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016420mg PE=4 SV=1[more]
BLAST of Csa1G560650 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G26749.26.8e-3644.32 C2H2 and C2HC zinc fingers superfamily protein[more]
BLAST of Csa1G560650 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449435572|ref|XP_004135569.1|1.2e-93100.00PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis sativus][more]
gi|659099282|ref|XP_008450521.1|1.4e-8692.99PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis melo][more]
gi|731415967|ref|XP_010659728.1|4.4e-5362.82PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X1 [Vitis vinife... [more]
gi|470132887|ref|XP_004302306.1|1.0e-4960.26PREDICTED: zinc finger CCCH domain-containing protein 3 [Fragaria vesca subsp. v... [more]
gi|567871303|ref|XP_006428241.1|4.7e-4756.33hypothetical protein CICLE_v10012993mg [Citrus clementina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
IPR003604Matrin/U1-like-C_Znf_C2H2
IPR013085U1-CZ_Znf_C2H2
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006508 proteolysis
cellular_component GO:0005575 cellular_component
cellular_component GO:0005829 cytosol
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0016920 pyroglutamyl-peptidase activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU107525cucumber EST collection version 3.0transcribed_cluster
CU111118cucumber EST collection version 3.0transcribed_cluster
CU121343cucumber EST collection version 3.0transcribed_cluster
CU173992cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G560650.1Csa1G560650.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU107525CU107525transcribed_cluster
CU121343CU121343transcribed_cluster
CU173992CU173992transcribed_cluster
CU111118CU111118transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeGENE3DG3DSA:4.10.1000.10coord: 54..80
score: 9.
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 56..80
score: 2.
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 54..81
score: 2.
IPR000571Zinc finger, CCCH-typePROFILEPS50103ZF_C3H1coord: 55..82
score: 14
IPR000571Zinc finger, CCCH-typeunknownSSF90229CCCH zinc fingercoord: 52..82
score: 1.5
IPR003604Zinc finger, U1-typeSMARTSM00451ZnF_U1_5coord: 3..38
score: 3.
IPR013085Zinc finger, U1-C typePFAMPF06220zf-U1coord: 5..36
score: 1.
NoneNo IPR availablePANTHERPTHR16465NUCLEASE-RELATEDcoord: 2..156
score: 1.0
NoneNo IPR availableunknownSSF57667beta-beta-alpha zinc fingerscoord: 4..49
score: 4.03