MELO3C015248 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C015248
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionZinc finger CCCH domain-containing protein 3
Locationchr2 : 260429 .. 262040 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TAGAAATTGTGGGGGAAAAAACATAAGGTTGATTGTAGGAGAAATTGATCAGAAACAGAAAACCTTCAAAGAAAGCTTTGGAACGACGAACAAGAAGATGCCATTGGGAAAATATTATTGCGACTATTGCGATAAGCAATTTCAAGACACTCCCTTTGCTCGGAAACGCCATCTTCAAAGTCTCTCCCATCAGAAGGCCAAAGCTCTATGGTTCGACTCCTTCAAAGGTCCAACACCCCATCTCCTTTCTTCTTTCTCCCTTTTCCCCTCATTTCCCCCCCTCAATTCTTCCTTTTTCCCTTGCAGATTCCAATCAAACTTTCCCTCATTCCTTCCACTTCCGACCACGCATATGTAATCGATTCCTCTCTACGGTAATTCTCAATCCTTCTTCTTCTTCTTCTCTTCGCATCGTCATCCATTTTCTTTTAACCTAATTTTTGCTTCTTTTTCGTCTTCATTTCAAAGGGGTTTTGCCAATACGGTGATTCTTGTAAATATTTTCACCCCAAGAACAACCACAATGACAATACGCACAACTCCAGTTCTCACCCCATTGCAGGTATCCCGAAATTTATTTTCGTTTTTCATCCATTTCCTGTCTAATTTTGAATCTAATTCACAGGTTTCCCGGAAAATAATCAACCCCCAAATGTTCCGTTTAATCGATTTGTAGACGGCAACTCTTCTTCCACAGGTAACTTTTAAAGTGAACTTGTTGCTGGTTTTTTTGGCGGCTTTATGTGTTCCACGCTTTATTTGTTTATTTATTATTACCAAAAGGAACAGCCGTGTATTTGCTCATTCGTAGCAACAATTCATCTTTCATTGATCGATTTTGAACAGCTCTACATATTGTTTGGCAACCAGGTTTATTGTATTTGAAAATTAACCATCTAAAACACTAATCCACCTCTAAGTTCCTTGCTTTATTGTATACTTCCTACCAATTTTTAAAAAATCAGGCCATGTCGTGAAACTTAAAAAAATTGTTCTTATTTTTAGAATTAGCTAAAAATTGAAATTTTTTACCCAATAAAGATGAAACGAGTGTTGTAAGAAATTGAGAGGAGATGGACTTAATTTAATAAAACTAAAACTAAATGGTTACCAACCCAGTGGGTTTCTGTTCCTTACATTAGTTCATAATCTTTACCTTCAGGTAGTCTAGTTAGCGATAGACTGGGAACATCATGGGGAAATTTACCTCCATCACTGATGCCTCCTCCAGAGGGTGGATACCCACCTCTTCCTTTCGTAGATTGGGGATAATCCATCTCAATATCAGCTATTGGTACAACTCTCATCGGTTCTCTGGTTTCTGGGAAGTGCTACTCTATTTATGCAGAAATTTGTACAAATTTGTTGTCTTCACATCCAGCAAATGTGCTCTCTTGTTTTCCCTTCGGGTACGATTTGCAACCCATAAATGTTATCAACTTTCATCTTATGTTAATGTTAAAGTATTTAGTTTGCATATGTTATTATAGCTCAGGTTGAAACGTCATGATATATTGAGTTATATTGAGTTTATGGTGCTTTGAACTTGTTGAGATCATAACGATCGAATGATATATGGTATAACAGCAATATGACGATGAAGAAATTAAGC

mRNA sequence

TAGAAATTGTGGGGGAAAAAACATAAGGTTGATTGTAGGAGAAATTGATCAGAAACAGAAAACCTTCAAAGAAAGCTTTGGAACGACGAACAAGAAGATGCCATTGGGAAAATATTATTGCGACTATTGCGATAAGCAATTTCAAGACACTCCCTTTGCTCGGAAACGCCATCTTCAAAGTCTCTCCCATCAGAAGGCCAAAGCTCTATGGTTCGACTCCTTCAAAGATTCCAATCAAACTTTCCCTCATTCCTTCCACTTCCGACCACGCATATGTAATCGATTCCTCTCTACGGGGTTTTGCCAATACGGTGATTCTTGTAAATATTTTCACCCCAAGAACAACCACAATGACAATACGCACAACTCCAGTTCTCACCCCATTGCAGGTTTCCCGGAAAATAATCAACCCCCAAATGTTCCGTTTAATCGATTTGTAGACGGCAACTCTTCTTCCACAGGTAGTCTAGTTAGCGATAGACTGGGAACATCATGGGGAAATTTACCTCCATCACTGATGCCTCCTCCAGAGGGTGGATACCCACCTCTTCCTTTCGTAGATTGGGGATAATCCATCTCAATATCAGCTATTGGTACAACTCTCATCGGTTCTCTGGTTTCTGGGAAGTGCTACTCTATTTATGCAGAAATTTGTACAAATTTGTTGTCTTCACATCCAGCAAATGTGCTCTCTTGTTTTCCCTTCGGGTACGATTTGCAACCCATAAATGTTATCAACTTTCATCTTATGTTAATGTTAAAGTATTTAGTTTGCATATGTTATTATAGCTCAGGTTGAAACGTCATGATATATTGAGTTATATTGAGTTTATGGTGCTTTGAACTTGTTGAGATCATAACGATCGAATGATATATGGTATAACAGCAATATGACGATGAAGAAATTAAGC

Coding sequence (CDS)

ATGCCATTGGGAAAATATTATTGCGACTATTGCGATAAGCAATTTCAAGACACTCCCTTTGCTCGGAAACGCCATCTTCAAAGTCTCTCCCATCAGAAGGCCAAAGCTCTATGGTTCGACTCCTTCAAAGATTCCAATCAAACTTTCCCTCATTCCTTCCACTTCCGACCACGCATATGTAATCGATTCCTCTCTACGGGGTTTTGCCAATACGGTGATTCTTGTAAATATTTTCACCCCAAGAACAACCACAATGACAATACGCACAACTCCAGTTCTCACCCCATTGCAGGTTTCCCGGAAAATAATCAACCCCCAAATGTTCCGTTTAATCGATTTGTAGACGGCAACTCTTCTTCCACAGGTAGTCTAGTTAGCGATAGACTGGGAACATCATGGGGAAATTTACCTCCATCACTGATGCCTCCTCCAGAGGGTGGATACCCACCTCTTCCTTTCGTAGATTGGGGATAA

Protein sequence

MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRICNRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFPENNQPPNVPFNRFVDGNSSSTGSLVSDRLGTSWGNLPPSLMPPPEGGYPPLPFVDWG*
Homology
[Close]
BLAST of MELO3C015248 vs. Swiss-Prot
Match: C3H3_ORYSJ (Zinc finger CCCH domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=Os01g0252200 PE=2 SV=2)

HSP 1 Score: 156.4 bits (394), Expect = 2.6e-37
Identity = 84/172 (48.84%), Postives = 104/172 (60.47%), Query Frame = 1 

Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFK-----DSNQTFPHSFHF 60
           MPLGKYYCDYC+KQFQDTP ARKRHL    H +A+ALW+D+ +           P   H 
Sbjct: 1   MPLGKYYCDYCEKQFQDTPAARKRHLDGAQHHRARALWYDAVRRQELHGGGGGAPPLLH- 60

Query: 61  RP-----RICNRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAG--FPENN---QP 120
           +P      +C  F+ TG C++GDSC+YFHPK     N   + S P++G    ++N     
Sbjct: 61  QPGAAAIGVCQHFVRTGTCKFGDSCRYFHPK-PPPANPGPAPSGPVSGPMAQQSNIQGSQ 120

Query: 121 PNVPFNRFVDGNSSSTGSLVSDRLGTSWGNLPPSLMPPPEGGYPPLPFVDWG 158
           PN    +  DG SS +G+++     TSWGNLPPSL PPPEGGYPP PFVDWG
Sbjct: 121 PNFVGYQAADG-SSFSGNILGGH--TSWGNLPPSLRPPPEGGYPPFPFVDWG 167

[Close]
BLAST of MELO3C015248 vs. Swiss-Prot
Match: ZMAT5_BOVIN (Zinc finger matrin-type protein 5 OS=Bos taurus GN=ZMAT5 PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.6e-18
Identity = 55/169 (32.54%), Postives = 77/169 (45.56%), Query Frame = 1 

Query: 5   KYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRICNRFL 64
           +Y+CDYCD+ FQD    RK+HL  L H KAK LW+D F+D+        + RP  C +FL
Sbjct: 4   RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKLWYDMFRDAAAILLDEQNKRP--CRKFL 63

Query: 65  STGFCQYGDSCKYFH--PKNNHNDNTHNSSSHPIAGFP-ENNQPPNVPFNRFVDGNSSST 124
            TG C +G +C++ H   ++    +           +P +  + P V    +++  +   
Sbjct: 64  LTGQCDFGSNCRFSHMSERDLQELSVQVEEERRAREWPLDVAELPEVCLEDWLEKRAKRL 123

Query: 125 GSLVSDR----------LGTSW---GNLPPSLMPPPEGGYPPLPFVDWG 158
            S  S R              W     LPPSL  PP GG+P  P V WG
Sbjct: 124 SSAPSSRAEPVRATVFQYPVGWPPVQELPPSLRAPPPGGWPLQPSVQWG 170

[Close]
BLAST of MELO3C015248 vs. Swiss-Prot
Match: ZMAT5_HUMAN (Zinc finger matrin-type protein 5 OS=Homo sapiens GN=ZMAT5 PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 7.9e-18
Identity = 55/169 (32.54%), Postives = 73/169 (43.20%), Query Frame = 1 

Query: 5   KYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRICNRFL 64
           +Y+CDYCD+ FQD    RK+HL  L H KAK +W+D F+D+        + RP  C +FL
Sbjct: 4   RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLDEQNKRP--CRKFL 63

Query: 65  STGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFPENNQPPNVPFNRFVD------GNS 124
            TG C +G +C++ H                          P +P     D         
Sbjct: 64  LTGQCDFGSNCRFSHMSERDLQELSIQVEEERRAREWLLDAPELPEGHLEDWLEKRAKRL 123

Query: 125 SSTGSLVSDRLGTS-------W---GNLPPSLMPPPEGGYPPLPFVDWG 158
           SS  S  ++ + T+       W     LPPSL  PP GG+P  P V WG
Sbjct: 124 SSAPSSRAEPIRTTVFQYPVGWPPVQELPPSLRAPPPGGWPLQPRVQWG 170

[Close]
BLAST of MELO3C015248 vs. Swiss-Prot
Match: ZMAT5_MOUSE (Zinc finger matrin-type protein 5 OS=Mus musculus GN=Zmat5 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.1e-17
Identity = 53/173 (30.64%), Postives = 74/173 (42.77%), Query Frame = 1 

Query: 5   KYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRICNRFL 64
           +Y+CDYCD+ FQD    RK+HL  L H KAK +W+D F+D+        + RP  C +FL
Sbjct: 4   RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLDEQNKRP--CRKFL 63

Query: 65  STGFCQYGDSCKYFHPKNN-------HNDNTHNSSSHPIAGFPENNQPPNVPFNRFVDGN 124
            TG C +G +C++ H             +    +   P+    E  + P      +++  
Sbjct: 64  LTGQCDFGSNCRFSHMSEQDLQELSVQVEEERRAREWPL----ETAELPEGHLEDWLEKR 123

Query: 125 SSSTGSLVSDR----------LGTSW---GNLPPSLMPPPEGGYPPLPFVDWG 158
           +    S  S R              W     LPPSL  PP GG+  L  V WG
Sbjct: 124 AKRLSSAPSSRAEPIRTTVFQYPVGWPPMQELPPSLRAPPPGGWSVLSKVQWG 170

[Close]
BLAST of MELO3C015248 vs. Swiss-Prot
Match: ZMAT5_DANRE (Zinc finger matrin-type protein 5 OS=Danio rerio GN=zmat5 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-15
Identity = 49/178 (27.53%), Postives = 73/178 (41.01%), Query Frame = 1 

Query: 5   KYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRICNRFL 64
           +YYCDYCD+ FQD    RK+HL  + H +AK  WFD+F+D+      +      +C +F+
Sbjct: 4   RYYCDYCDRSFQDNLHNRKKHLNGVQHHRAKKAWFDNFRDAATLL--NDERSKEVCRKFV 63

Query: 65  STGFCQYGDSCKYFHPKNNH--------NDNTHNSSSHPIAGFPENNQPPNVPFNRFVDG 124
            TG C +G SC++ H             +D             P+ +       + ++  
Sbjct: 64  QTGQCVFGTSCRFSHMSEKQMKMLEQKIDDEKRQKED------PDQDGSSERSVDEWLSR 123

Query: 125 NSSSTGSLVSDRL-----------------GTSWGNLPPSLMPPPEGGYPPLPFVDWG 158
                 +L S R+                   S  +LPPSL PPP GG+      +WG
Sbjct: 124 REKKLAALTSGRVLRMEEEECTENIEIPPYLLSIPDLPPSLHPPPAGGWRVTVHNEWG 173

[Close]
BLAST of MELO3C015248 vs. TrEMBL
Match: A0A0A0M1B0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560650 PE=4 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 9.6e-87
Identity = 146/157 (92.99%), Postives = 153/157 (97.45%), Query Frame = 1 

Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRIC 60
           MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKD NQ+FPHSFHFRPRIC
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRIC 60

Query: 61  NRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFPENNQPPNVPFNRFVDGNSSS 120
           NRFLSTGFCQYGDSCKYFHP NN+NDNT+NSSS+P+AGFPEN QPPNVP NRFVDGNSSS
Sbjct: 61  NRFLSTGFCQYGDSCKYFHP-NNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSS 120

Query: 121 TGSLVSDRLGTSWGNLPPSLMPPPEGGYPPLPFVDWG 158
           TGSL+SDRLGTSWGNLPPSLMPPP+GGYPPLPFVDWG
Sbjct: 121 TGSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 156

[Close]
BLAST of MELO3C015248 vs. TrEMBL
Match: D7UA82_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g00610 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 3.1e-53
Identity = 99/157 (63.06%), Postives = 118/157 (75.16%), Query Frame = 1 

Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRIC 60
           MPLGKY+CDYCDKQFQDTP ARKRHLQ L HQ+AKALW+DSF+D NQ    +  +   +C
Sbjct: 1   MPLGKYHCDYCDKQFQDTPSARKRHLQGLQHQRAKALWYDSFRDPNQI--QAEGYGKGVC 60

Query: 61  NRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFPENNQPPNVPFNRFVDGNSSS 120
           NRF+ TGFCQYGDSCKYFHPK +  +   N+ S P+ GFP+N Q  + P N+ V G    
Sbjct: 61  NRFVRTGFCQYGDSCKYFHPKQSLQNT--NTQSIPVTGFPDNIQSLSNPGNQLV-GGGPL 120

Query: 121 TGSLVSDRLGTSWGNLPPSLMPPPEGGYPPLPFVDWG 158
            G++V D +G SWGNLPPSL PPPEGGYPPLPF+DWG
Sbjct: 121 PGNVVKDSMGNSWGNLPPSLKPPPEGGYPPLPFLDWG 152

[Close]
BLAST of MELO3C015248 vs. TrEMBL
Match: V4SWC1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012993mg PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 6.1e-49
Identity = 92/158 (58.23%), Postives = 111/158 (70.25%), Query Frame = 1 

Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPR-I 60
           MPLGKYYCDYCDKQFQDT FARKRHLQ + H +AKALW+DS  ++NQT+P  F   P+ +
Sbjct: 1   MPLGKYYCDYCDKQFQDTYFARKRHLQGIQHLRAKALWYDSLNETNQTYPDGF---PKGV 60

Query: 61  CNRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFPENNQPPNVPFNRFVDGNSS 120
           C+RF+ TGFC +GDSCKY HPKNN   N+ N           N +  +V    ++ G SS
Sbjct: 61  CSRFVKTGFCPFGDSCKYLHPKNNPPQNSGNQGLRATGFTDINARSSSVDQRIYLAGGSS 120

Query: 121 STGSLVSDRLGTSWGNLPPSLMPPPEGGYPPLPFVDWG 158
             G ++ D +G SWGNLPPSL PPPEGGYP LPFVDWG
Sbjct: 121 FPGDMMRDSMGMSWGNLPPSLKPPPEGGYPLLPFVDWG 155

[Close]
BLAST of MELO3C015248 vs. TrEMBL
Match: M5WL08_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016420mg PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 8.8e-48
Identity = 92/157 (58.60%), Postives = 107/157 (68.15%), Query Frame = 1 

Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRIC 60
           MPLGKYYC+YCDK+FQDTP AR+RHLQ L H +AKA W+DSFKD +  +         +C
Sbjct: 1   MPLGKYYCEYCDKEFQDTPSARRRHLQGLQHLRAKAQWYDSFKDPSHAYTEG--LTKGVC 60

Query: 61  NRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFPENNQPPNVPFNRFVDGNSSS 120
           NRF+ TGFC YGDSC+Y HPKNN      N  +    G  +NNQ      N+ V G SS 
Sbjct: 61  NRFVKTGFCPYGDSCRYLHPKNNQ----QNMVTQGAPGLIDNNQSSTFQENQLV-GGSSL 120

Query: 121 TGSLVSDRLGTSWGNLPPSLMPPPEGGYPPLPFVDWG 158
              +V D +G SWGNLPPSLMPPPEGGYPPLPFVDWG
Sbjct: 121 PDVVVRDSMGMSWGNLPPSLMPPPEGGYPPLPFVDWG 150

[Close]
BLAST of MELO3C015248 vs. TrEMBL
Match: A0A067JTM5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23183 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 1.1e-45
Identity = 92/159 (57.86%), Postives = 111/159 (69.81%), Query Frame = 1 

Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFK--DSNQTFPHSFHFRPR 60
           MPLGKYYCDYC+K+FQDT  ARKRHLQS SH +AK+LW+ S +  D +QT+         
Sbjct: 1   MPLGKYYCDYCEKEFQDTAIARKRHLQSASHVRAKSLWYASLRSGDPSQTYADG---AKG 60

Query: 61  ICNRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFPENNQPPNVPFNRFVDGNS 120
           ICNRF+ TGFC YGDSCKY HP NN N+  +N  +   AG  +N Q P +P ++ V G S
Sbjct: 61  ICNRFVKTGFCPYGDSCKYLHP-NNSNNLQNNVGTSQAAGLMDNVQSPFIPGSQLV-GGS 120

Query: 121 SSTGSLVSDRLGTSWGNLPPSLMPPPEGGYPPLPFVDWG 158
           S  G ++ D +G  WGNLPPSL PPPEGGY PLPFVDWG
Sbjct: 121 SLPGEMLRDSMGMPWGNLPPSLKPPPEGGYLPLPFVDWG 154

[Close]
BLAST of MELO3C015248 vs. TAIR10
Match: AT5G26749.2 (AT5G26749.2 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 147.1 bits (370), Expect = 9.0e-36
Identity = 79/177 (44.63%), Postives = 94/177 (53.11%), Query Frame = 1 

Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPR-I 60
           MP GKYYCDYC+K+FQDT  ARKRHLQS  H +AKALW+ S   S+   P   +F  + +
Sbjct: 1   MPSGKYYCDYCEKEFQDTQVARKRHLQSKPHLRAKALWYSS-SSSDLVNPQVSNFATKGL 60

Query: 61  CNRFLST-------------------GFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFP 120
           CNRF+++                    FC +GDSC+YFHP NN              GF 
Sbjct: 61  CNRFITSVRRIDFVSLCSSFLAISGCNFCPFGDSCRYFHPNNNTGS----------TGFT 120

Query: 121 ENNQPPNVPFNRFVDGNSSSTGSLVSDRLGTSWGNLPPSLMPPPEGGYPPLPFVDWG 158
            N Q      N+     S+     VS R GT W +LPPSL PPPE GYP LPF+DWG
Sbjct: 121 NNTQLRVDMLNQQHIQGSTLNRDFVSGRPGTGWFDLPPSLKPPPEQGYPQLPFIDWG 166

[Close]
BLAST of MELO3C015248 vs. NCBI nr
Match: gi|659099282|ref|XP_008450521.1| (PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis melo])

HSP 1 Score: 353.6 bits (906), Expect = 1.8e-94
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 1 

Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRIC 60
           MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRIC
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRIC 60

Query: 61  NRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFPENNQPPNVPFNRFVDGNSSS 120
           NRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFPENNQPPNVPFNRFVDGNSSS
Sbjct: 61  NRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFPENNQPPNVPFNRFVDGNSSS 120

Query: 121 TGSLVSDRLGTSWGNLPPSLMPPPEGGYPPLPFVDWG 158
           TGSLVSDRLGTSWGNLPPSLMPPPEGGYPPLPFVDWG
Sbjct: 121 TGSLVSDRLGTSWGNLPPSLMPPPEGGYPPLPFVDWG 157

[Close]
BLAST of MELO3C015248 vs. NCBI nr
Match: gi|449435572|ref|XP_004135569.1| (PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis sativus])

HSP 1 Score: 327.4 bits (838), Expect = 1.4e-86
Identity = 146/157 (92.99%), Postives = 153/157 (97.45%), Query Frame = 1 

Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRIC 60
           MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKD NQ+FPHSFHFRPRIC
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRIC 60

Query: 61  NRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFPENNQPPNVPFNRFVDGNSSS 120
           NRFLSTGFCQYGDSCKYFHP NN+NDNT+NSSS+P+AGFPEN QPPNVP NRFVDGNSSS
Sbjct: 61  NRFLSTGFCQYGDSCKYFHP-NNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSS 120

Query: 121 TGSLVSDRLGTSWGNLPPSLMPPPEGGYPPLPFVDWG 158
           TGSL+SDRLGTSWGNLPPSLMPPP+GGYPPLPFVDWG
Sbjct: 121 TGSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 156

[Close]
BLAST of MELO3C015248 vs. NCBI nr
Match: gi|731415967|ref|XP_010659728.1| (PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X1 [Vitis vinifera])

HSP 1 Score: 216.1 bits (549), Expect = 4.5e-53
Identity = 99/157 (63.06%), Postives = 118/157 (75.16%), Query Frame = 1 

Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRIC 60
           MPLGKY+CDYCDKQFQDTP ARKRHLQ L HQ+AKALW+DSF+D NQ    +  +   +C
Sbjct: 1   MPLGKYHCDYCDKQFQDTPSARKRHLQGLQHQRAKALWYDSFRDPNQI--QAEGYGKGVC 60

Query: 61  NRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFPENNQPPNVPFNRFVDGNSSS 120
           NRF+ TGFCQYGDSCKYFHPK +  +   N+ S P+ GFP+N Q  + P N+ V G    
Sbjct: 61  NRFVRTGFCQYGDSCKYFHPKQSLQNT--NTQSIPVTGFPDNIQSLSNPGNQLV-GGGPL 120

Query: 121 TGSLVSDRLGTSWGNLPPSLMPPPEGGYPPLPFVDWG 158
            G++V D +G SWGNLPPSL PPPEGGYPPLPF+DWG
Sbjct: 121 PGNVVKDSMGNSWGNLPPSLKPPPEGGYPPLPFLDWG 152

[Close]
BLAST of MELO3C015248 vs. NCBI nr
Match: gi|470132887|ref|XP_004302306.1| (PREDICTED: zinc finger CCCH domain-containing protein 3 [Fragaria vesca subsp. vesca])

HSP 1 Score: 206.8 bits (525), Expect = 2.7e-50
Identity = 96/157 (61.15%), Postives = 115/157 (73.25%), Query Frame = 1 

Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRIC 60
           MPLGKY C+YC+KQFQDTP+AR+RHLQSL H +AKA WFDSFKD N  +  S      +C
Sbjct: 1   MPLGKYDCEYCNKQFQDTPYARRRHLQSLQHLRAKAQWFDSFKDPNDAYAQS--LGRGVC 60

Query: 61  NRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFPENNQPPNVPFNRFVDGNSSS 120
           NRF++TGFCQYGD+CKYFHPKNN      N+ +   +G  +N+Q   +  N+ V G SS 
Sbjct: 61  NRFVNTGFCQYGDACKYFHPKNNQ----QNTITQGASGVTDNSQSSTIQGNQMVAG-SSL 120

Query: 121 TGSLVSDRLGTSWGNLPPSLMPPPEGGYPPLPFVDWG 158
              +V D +G SWGNLPPSLMPPPEGGYPPLPFVDWG
Sbjct: 121 PDVVVRDNMGMSWGNLPPSLMPPPEGGYPPLPFVDWG 150

[Close]
BLAST of MELO3C015248 vs. NCBI nr
Match: gi|567871303|ref|XP_006428241.1| (hypothetical protein CICLE_v10012993mg [Citrus clementina])

HSP 1 Score: 201.8 bits (512), Expect = 8.7e-49
Identity = 92/158 (58.23%), Postives = 111/158 (70.25%), Query Frame = 1 

Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPR-I 60
           MPLGKYYCDYCDKQFQDT FARKRHLQ + H +AKALW+DS  ++NQT+P  F   P+ +
Sbjct: 1   MPLGKYYCDYCDKQFQDTYFARKRHLQGIQHLRAKALWYDSLNETNQTYPDGF---PKGV 60

Query: 61  CNRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFPENNQPPNVPFNRFVDGNSS 120
           C+RF+ TGFC +GDSCKY HPKNN   N+ N           N +  +V    ++ G SS
Sbjct: 61  CSRFVKTGFCPFGDSCKYLHPKNNPPQNSGNQGLRATGFTDINARSSSVDQRIYLAGGSS 120

Query: 121 STGSLVSDRLGTSWGNLPPSLMPPPEGGYPPLPFVDWG 158
             G ++ D +G SWGNLPPSL PPPEGGYP LPFVDWG
Sbjct: 121 FPGDMMRDSMGMSWGNLPPSLKPPPEGGYPLLPFVDWG 155

The following BLAST results are available for this feature:
BLAST of MELO3C015248 vs. Swiss-Prot
Match NameE-valueIdentityDescription
C3H3_ORYSJ2.6e-3748.84Zinc finger CCCH domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=... [more]
ZMAT5_BOVIN1.6e-1832.54Zinc finger matrin-type protein 5 OS=Bos taurus GN=ZMAT5 PE=2 SV=1[more]
ZMAT5_HUMAN7.9e-1832.54Zinc finger matrin-type protein 5 OS=Homo sapiens GN=ZMAT5 PE=1 SV=1[more]
ZMAT5_MOUSE5.1e-1730.64Zinc finger matrin-type protein 5 OS=Mus musculus GN=Zmat5 PE=2 SV=1[more]
ZMAT5_DANRE1.3e-1527.53Zinc finger matrin-type protein 5 OS=Danio rerio GN=zmat5 PE=2 SV=1[more]
BLAST of MELO3C015248 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M1B0_CUCSA9.6e-8792.99Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560650 PE=4 SV=1[more]
D7UA82_VITVI3.1e-5363.06Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g00610 PE=4 SV=... [more]
V4SWC1_9ROSI6.1e-4958.23Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012993mg PE=4 SV=1[more]
M5WL08_PRUPE8.8e-4858.60Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016420mg PE=4 SV=1[more]
A0A067JTM5_JATCU1.1e-4557.86Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23183 PE=4 SV=1[more]
BLAST of MELO3C015248 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G26749.29.0e-3644.63 C2H2 and C2HC zinc fingers superfamily protein[more]
BLAST of MELO3C015248 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659099282|ref|XP_008450521.1|1.8e-94100.00PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis melo][more]
gi|449435572|ref|XP_004135569.1|1.4e-8692.99PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis sativus][more]
gi|731415967|ref|XP_010659728.1|4.5e-5363.06PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X1 [Vitis vinife... [more]
gi|470132887|ref|XP_004302306.1|2.7e-5061.15PREDICTED: zinc finger CCCH domain-containing protein 3 [Fragaria vesca subsp. v... [more]
gi|567871303|ref|XP_006428241.1|8.7e-4958.23hypothetical protein CICLE_v10012993mg [Citrus clementina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
IPR003604Matrin/U1-like-C_Znf_C2H2
IPR013085U1-CZ_Znf_C2H2
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0046872 metal ion binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU58804melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C015248T1MELO3C015248T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU58804MU58804transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeGENE3DG3DSA:4.10.1000.10coord: 54..80
score: 1.
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 56..81
score: 1.
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 54..81
score: 5.
IPR000571Zinc finger, CCCH-typePROFILEPS50103ZF_C3H1coord: 55..82
score: 1
IPR000571Zinc finger, CCCH-typeunknownSSF90229CCCH zinc fingercoord: 52..83
score: 2.0
IPR003604Zinc finger, U1-typeSMARTSM00451ZnF_U1_5coord: 3..38
score: 3.
IPR013085Zinc finger, U1-C typePFAMPF06220zf-U1coord: 5..36
score: 1.
NoneNo IPR availablePANTHERPTHR16465NUCLEASE-RELATEDcoord: 2..157
score: 2.4
NoneNo IPR availablePANTHERPTHR16465:SF0ZINC FINGER MATRIN-TYPE PROTEIN 5coord: 2..157
score: 2.4
NoneNo IPR availableunknownSSF57667beta-beta-alpha zinc fingerscoord: 4..52
score: 1.19

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C015248Csa1G560650Cucumber (Chinese Long) v2cumeB058
MELO3C015248Cla005152Watermelon (97103) v1mewmB272
MELO3C015248ClCG03G017800Watermelon (Charleston Gray)mewcgB245
MELO3C015248Cla97C03G068210Watermelon (97103) v2mewmbB250
MELO3C015248CSPI01G25540Wild cucumber (PI 183967)cpimeB061
MELO3C015248Cucsa.050840Cucumber (Gy14) v1cgymeB031
MELO3C015248CmaCh11G012250Cucurbita maxima (Rimu)cmameB108
MELO3C015248CmoCh11G012780Cucurbita moschata (Rifu)cmomeB103
MELO3C015248Lsi06G000320Bottle gourd (USVL1VR-Ls)lsimeB396
MELO3C015248CsaV3_1G037970Cucumber (Chinese Long) v3cucmeB059
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C015248Watermelon (97103) v2mewmbB242
MELO3C015248Wax gourdmewgoB308
MELO3C015248Melon (DHL92) v3.5.1memeB107
MELO3C015248Cucumber (Gy14) v1cgymeB030
MELO3C015248Cucumber (Gy14) v1cgymeB102
MELO3C015248Cucurbita maxima (Rimu)cmameB068
MELO3C015248Cucurbita maxima (Rimu)cmameB722
MELO3C015248Cucurbita moschata (Rifu)cmomeB060
MELO3C015248Cucurbita moschata (Rifu)cmomeB712
MELO3C015248Wild cucumber (PI 183967)cpimeB042
MELO3C015248Wild cucumber (PI 183967)cpimeB113
MELO3C015248Cucumber (Chinese Long) v2cumeB041
MELO3C015248Cucumber (Chinese Long) v2cumeB112
MELO3C015248Watermelon (Charleston Gray)mewcgB237
MELO3C015248Watermelon (97103) v1mewmB282
MELO3C015248Cucurbita pepo (Zucchini)cpemeB331
MELO3C015248Cucurbita pepo (Zucchini)cpemeB618
MELO3C015248Bottle gourd (USVL1VR-Ls)lsimeB105
MELO3C015248Cucumber (Gy14) v2cgybmeB038
MELO3C015248Cucumber (Gy14) v2cgybmeB054
MELO3C015248Cucumber (Chinese Long) v3cucmeB042
MELO3C015248Cucumber (Chinese Long) v3cucmeB119