CSPI01G25540 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G25540
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	U1 zinc finger protein
Location	Chr1 : 21008073 .. 21010818 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTCCAAGTTGATCCTCTATTTTTGGTACTTTATAGATAGCAAATATTAACACTTTGACCTATTGAACTGTTGACACAGATCCGTCTACTCACAAAATAAACACATCAAAGTGAGTTTTTATCGATTATGTTAAATGCACCATCTCATAGTTGCACTAACAAAGACGTTTAATACCAATTTATACCTAAAAAAAATGAGGTATAAAGAAAAACAAATAGAATTTAGAAATTGTGGGGGGAAAAAGCATAAGATAGATTGGAGGAGAAATTGATCGGAAACAGAAAGGCTTTAAAGAAAGCTTTGGAACGACGAAGAAGAAGGCTGAAGGAATCGAAGAAGAAGATGCCATTGGGAAAATATTATTGCGACTACTGCGATAAGCAATTTCAAGACACTCCCTTTGCTCGAAAACGCCATCTTCAAAGTCTCTCTCATCAGAAGGCCAAAGCTCTTTGGTTCGACTCCTTCAAAGGTCCAACACTGCATCTCCTCTCTTCTTTCTCCATTTTCTCCTCATTTCCCCCCCTCAATTCTTCCTTTTTCCCTTGCAGATTTCAATCGATCTTTCCCTCATTCCTTCCACTTCCGACCACGCATCTGTAATCGATTCCTCTCTACGGTAATTCTCAATTCTTCTTCTTCTCTTCCCTTCGCATCGTCATCCATTTTCTTTTAACCTAATTTTTGCTTCTTCTTCTTCTTCATTTCAAAGGGGTTTTGCCAATACGGCGATTCTTGTAAATATTTTCACCCCAATAACAACAATGACAATACGTACAACTCCAGTTCCTACCCTATGGCAGGTATCCCGAAATTTATTTTCGTTTTCCATCCATTTCCTGTCTAATTTTGAATCTAATTCACAGGTTTCCCGGAAAATTATCAACCCCCAAATGTTCCGGTTAATCGATTTGTAGACGGCAACTCTTCTTCCACAGGTAATTTTAAAGTGAACTTGTTGCTGGTTATTTTTGACAGCTTTATGTGTTCCACATTTTATTTGTTTATTTATTATTGCCATAAGAAACAGCCGTGTATTTGCTTATTCATAGCAACCATTCATCTTCATTGATCGATTTTGAACAGCTCTACATATTGTTTGGCAACCAGGTTTATATTTTTAGTTTTTGAAAATTAACCATCTAAAACACTAATCCACCTCTAAGTTCCTTGCTTTATTGTATAGTTCCTACCAATGTTTTAAAAAATCAGGCCAAGTTGTGAAACTTAAAAAAATTTGCTTTTATCTTTAGAATTAGCTAAAAATTCAACTCTTTTACCCAATAAAAGATGGTATGAGTGTTGTAAGAATTATAGAGAACATGGACTTAATTTTCATGAAACTAAAACTAAATTGTTACCAACCCAGTGTTCAGGTTTCTGTTCCTTACATTAGTTCATAATCTTTATCTTCAGGTAGTTTAATTAGCGATAGACTGGGAACATCATGGGGAAATTTACCTCCATCACTGATGCCTCCTCCAGACGGTGGATACCCACCTCTTCCTTTCGTAGATTGGGGATAATCCATCAAGATCAGCTATTTGTTCAACTCTCATCAGTTCTCTGGTTTCTCGGATGTGCTACTCTATTTATGCGGAAATTTTGTACAAATTTGTTGTCTTCAACATCGAGCAAATGTGCTTTTCTCTTGTTCCCCCTTCGGGTACGAATTACAACCCATAAATGTGTTTTCAACTTTCATCTTATGTTAATCTTAAAGTATTTAGTTGCATGTGTTATTATAGCTCAGGTTGATACGTCATGATATATTGAGTTTATGGTGCTCTAAACTTGTTCAGATCATCATGATCGAATGATATATGGTATATTAGTAATACGACGATGAAGAAACTAAGGAAAACACCTGATTCTGAGACTCTTTCTTCACTAGCAAATTTAACTTTTCATTCATAAATCAGGCATGGGAGGCTTCAAATGTTATTGATGTCGACAAGTAGGTGAAATCATCTAAAGATAAGTATGAAGAACATTTGAATGCACGTTTTTGAATACATACATTGGCCCCTAAAGCATATTATTATTTCTTTTATTCAAGCATCTTGACAAACAAGCATCACCCCAATACATCCTCCTATACATTGGTAACCTAATAACTTGAAGATGCAAGTACTTCTAACAAGGAAGCAATAAATTGCATCTGGGTCTCTTCATCTATAGTTAAGAAGAGAGGAACATGAACAAATAGTGATTTGATGCCGTTCTCTTCTGCTTGGCGGAGGGAATGGTAGTAGACATAATTGCACACGAACCGACCAGCATCATCTGAAGTCATCACTTCGTATCCCTTCTTTGCCAGTGTCTTCGTTATTTCCTCCACTGGAAGAGAGGTCTGCAGGCAGAGTTGGGTAAGAAATCAGGAAGAGGAAATGATTTGCATAAAAATTTAAGGATCAATGGATGTAAATGAACCAACAAGGTTCTATAATTTCTACAATCAAATCTTATGCCATCTTCATGTGTACAAGTAATGGAATTTACTATATGGTTTGTAACCTGCCCGGAAAAGATTTAATTTGTTAAAATGTTTTGATGAACCAACTTCAGAAGAATAATATACACATCACACAACAGGGACACCAGCTTCGTATTTCTCAAATACACAAACATCGTCCTGAATGGCTTGACATTTTAACAGAAAGAACTAATCAGTGGTGTTATACTTGTATCTGAATCATTCTAAATTTTCTCCAATATATCTTTTAAAGTGTCGATCAATTTATT

mRNA sequence

ATGCCATTGGGAAAATATTATTGCGACTACTGCGATAAGCAATTTCAAGACACTCCCTTTGCTCGAAAACGCCATCTTCAAAGTCTCTCTCATCAGAAGGCCAAAGCTCTTTGGTTCGACTCCTTCAAAGATTTCAATCGATCTTTCCCTCATTCCTTCCACTTCCGACCACGCATCTGTAATCGATTCCTCTCTACGGGGTTTTGCCAATACGGCGATTCTTGTAAATATTTTCACCCCAATAACAACAATGACAATACGTACAACTCCAGTTCCTACCCTATGGCAGGTTTCCCGGAAAATTATCAACCCCCAAATGTTCCGGTTAATCGATTTGTAGACGGCAACTCTTCTTCCACAGGTAGTTTAATTAGCGATAGACTGGGAACATCATGGGGAAATTTACCTCCATCACTGATGCCTCCTCCAGACGGTGGATACCCACCTCTTCCTTTCGTAGATTGGGGATAA

Coding sequence (CDS)

ATGCCATTGGGAAAATATTATTGCGACTACTGCGATAAGCAATTTCAAGACACTCCCTTTGCTCGAAAACGCCATCTTCAAAGTCTCTCTCATCAGAAGGCCAAAGCTCTTTGGTTCGACTCCTTCAAAGATTTCAATCGATCTTTCCCTCATTCCTTCCACTTCCGACCACGCATCTGTAATCGATTCCTCTCTACGGGGTTTTGCCAATACGGCGATTCTTGTAAATATTTTCACCCCAATAACAACAATGACAATACGTACAACTCCAGTTCCTACCCTATGGCAGGTTTCCCGGAAAATTATCAACCCCCAAATGTTCCGGTTAATCGATTTGTAGACGGCAACTCTTCTTCCACAGGTAGTTTAATTAGCGATAGACTGGGAACATCATGGGGAAATTTACCTCCATCACTGATGCCTCCTCCAGACGGTGGATACCCACCTCTTCCTTTCGTAGATTGGGGATAA

Homology

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BLAST of CSPI01G25540 vs. Swiss-Prot
Match: C3H3_ORYSJ (Zinc finger CCCH domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=Os01g0252200 PE=2 SV=2)

HSP 1 Score: 151.0 bits (380), Expect = 1.1e-35
Identity = 83/171 (48.54%), Postives = 104/171 (60.82%), Query Frame = 1


Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFK-----DFNRSFPHSFHF 60
           MPLGKYYCDYC+KQFQDTP ARKRHL    H +A+ALW+D+ +           P   H 
Sbjct: 1   MPLGKYYCDYCEKQFQDTPAARKRHLDGAQHHRARALWYDAVRRQELHGGGGGAPPLLH- 60

Query: 61  RP-----RICNRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAG---FPENYQ--PP 120
           +P      +C  F+ TG C++GDSC+YFHP     N   + S P++G      N Q   P
Sbjct: 61  QPGAAAIGVCQHFVRTGTCKFGDSCRYFHPKPPPANPGPAPSGPVSGPMAQQSNIQGSQP 120

Query: 121 NVPVNRFVDGNSSSTGSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 157
           N    +  DG SS +G+++     TSWGNLPPSL PPP+GGYPP PFVDWG
Sbjct: 121 NFVGYQAADG-SSFSGNILGGH--TSWGNLPPSLRPPPEGGYPPFPFVDWG 167

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BLAST of CSPI01G25540 vs. Swiss-Prot
Match: ZMAT5_BOVIN (Zinc finger matrin-type protein 5 OS=Bos taurus GN=ZMAT5 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.1e-16
Identity = 55/173 (31.79%), Postives = 81/173 (46.82%), Query Frame = 1


Query: 5   KYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNRSFPHSFHFRPRICNRFL 64
           +Y+CDYCD+ FQD    RK+HL  L H KAK LW+D F+D         + RP  C +FL
Sbjct: 4   RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKLWYDMFRDAAAILLDEQNKRP--CRKFL 63

Query: 65  STGFCQYGDSCKYFHPNNNN--------DNTYNSSSYPMAGFPENYQPPNVPVNRFVDGN 124
            TG C +G +C++ H +  +        +    +  +P+    +  + P V +  +++  
Sbjct: 64  LTGQCDFGSNCRFSHMSERDLQELSVQVEEERRAREWPL----DVAELPEVCLEDWLEKR 123

Query: 125 SSSTGSLISDR----------LGTSW---GNLPPSLMPPPDGGYPPLPFVDWG 157
           +    S  S R              W     LPPSL  PP GG+P  P V WG
Sbjct: 124 AKRLSSAPSSRAEPVRATVFQYPVGWPPVQELPPSLRAPPPGGWPLQPSVQWG 170

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BLAST of CSPI01G25540 vs. Swiss-Prot
Match: ZMAT5_HUMAN (Zinc finger matrin-type protein 5 OS=Homo sapiens GN=ZMAT5 PE=1 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.8e-15
Identity = 56/169 (33.14%), Postives = 78/169 (46.15%), Query Frame = 1


Query: 5   KYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNRSFPHSFHFRPRICNRFL 64
           +Y+CDYCD+ FQD    RK+HL  L H KAK +W+D F+D         + RP  C +FL
Sbjct: 4   RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLDEQNKRP--CRKFL 63

Query: 65  STGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPE-NYQPPNVPVNRFVD------GNS 124
            TG C +G +C++ H +  +    +          E     P +P     D         
Sbjct: 64  LTGQCDFGSNCRFSHMSERDLQELSIQVEEERRAREWLLDAPELPEGHLEDWLEKRAKRL 123

Query: 125 SSTGSLISDRLGTS-------W---GNLPPSLMPPPDGGYPPLPFVDWG 157
           SS  S  ++ + T+       W     LPPSL  PP GG+P  P V WG
Sbjct: 124 SSAPSSRAEPIRTTVFQYPVGWPPVQELPPSLRAPPPGGWPLQPRVQWG 170

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BLAST of CSPI01G25540 vs. Swiss-Prot
Match: ZMAT5_MOUSE (Zinc finger matrin-type protein 5 OS=Mus musculus GN=Zmat5 PE=2 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.7e-15
Identity = 53/173 (30.64%), Postives = 79/173 (45.66%), Query Frame = 1


Query: 5   KYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNRSFPHSFHFRPRICNRFL 64
           +Y+CDYCD+ FQD    RK+HL  L H KAK +W+D F+D         + RP  C +FL
Sbjct: 4   RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLDEQNKRP--CRKFL 63

Query: 65  STGFCQYGDSCKYFHPNNNN--------DNTYNSSSYPMAGFPENYQPPNVPVNRFVDGN 124
            TG C +G +C++ H +  +        +    +  +P+    E  + P   +  +++  
Sbjct: 64  LTGQCDFGSNCRFSHMSEQDLQELSVQVEEERRAREWPL----ETAELPEGHLEDWLEKR 123

Query: 125 SSSTGSLISDR----------LGTSW---GNLPPSLMPPPDGGYPPLPFVDWG 157
           +    S  S R              W     LPPSL  PP GG+  L  V WG
Sbjct: 124 AKRLSSAPSSRAEPIRTTVFQYPVGWPPMQELPPSLRAPPPGGWSVLSKVQWG 170

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BLAST of CSPI01G25540 vs. Swiss-Prot
Match: ZMAT5_DANRE (Zinc finger matrin-type protein 5 OS=Danio rerio GN=zmat5 PE=2 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.6e-13
Identity = 49/172 (28.49%), Postives = 73/172 (42.44%), Query Frame = 1


Query: 5   KYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNRSFPHSFHFRPRICNRFL 64
           +YYCDYCD+ FQD    RK+HL  + H +AK  WFD+F+D       +      +C +F+
Sbjct: 4   RYYCDYCDRSFQDNLHNRKKHLNGVQHHRAKKAWFDNFRDAATLL--NDERSKEVCRKFV 63

Query: 65  STGFCQYGDSCKYFHPNNNNDNTYN---SSSYPMAGFPENYQPPNVPVNRFVDGNSSSTG 124
            TG C +G SC++ H +                    P+        V+ ++        
Sbjct: 64  QTGQCVFGTSCRFSHMSEKQMKMLEQKIDDEKRQKEDPDQDGSSERSVDEWLSRREKKLA 123

Query: 125 SLISDRL-----------------GTSWGNLPPSLMPPPDGGYPPLPFVDWG 157
           +L S R+                   S  +LPPSL PPP GG+      +WG
Sbjct: 124 ALTSGRVLRMEEEECTENIEIPPYLLSIPDLPPSLHPPPAGGWRVTVHNEWG 173

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BLAST of CSPI01G25540 vs. TrEMBL
Match: A0A0A0M1B0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560650 PE=4 SV=1)

HSP 1 Score: 343.6 bits (880), Expect = 1.3e-91
Identity = 155/156 (99.36%), Postives = 156/156 (100.00%), Query Frame = 1


Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNRSFPHSFHFRPRIC 60
           MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFN+SFPHSFHFRPRIC
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRIC 60

Query: 61  NRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSST 120
           NRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSST
Sbjct: 61  NRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSST 120

Query: 121 GSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 157
           GSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG
Sbjct: 121 GSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 156

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BLAST of CSPI01G25540 vs. TrEMBL
Match: D7UA82_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g00610 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 3.8e-51
Identity = 97/156 (62.18%), Postives = 118/156 (75.64%), Query Frame = 1


Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNRSFPHSFHFRPRIC 60
           MPLGKY+CDYCDKQFQDTP ARKRHLQ L HQ+AKALW+DSF+D N+    +  +   +C
Sbjct: 1   MPLGKYHCDYCDKQFQDTPSARKRHLQGLQHQRAKALWYDSFRDPNQI--QAEGYGKGVC 60

Query: 61  NRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSST 120
           NRF+ TGFCQYGDSCKYFHP  +  NT N+ S P+ GFP+N Q  + P N+ V G     
Sbjct: 61  NRFVRTGFCQYGDSCKYFHPKQSLQNT-NTQSIPVTGFPDNIQSLSNPGNQLV-GGGPLP 120

Query: 121 GSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 157
           G+++ D +G SWGNLPPSL PPP+GGYPPLPF+DWG
Sbjct: 121 GNVVKDSMGNSWGNLPPSLKPPPEGGYPPLPFLDWG 152

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BLAST of CSPI01G25540 vs. TrEMBL
Match: V4SWC1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012993mg PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 4.0e-45
Identity = 88/158 (55.70%), Postives = 110/158 (69.62%), Query Frame = 1


Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNRSFPHSFHFRPR-I 60
           MPLGKYYCDYCDKQFQDT FARKRHLQ + H +AKALW+DS  + N+++P  F   P+ +
Sbjct: 1   MPLGKYYCDYCDKQFQDTYFARKRHLQGIQHLRAKALWYDSLNETNQTYPDGF---PKGV 60

Query: 61  CNRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPE-NYQPPNVPVNRFVDGNSS 120
           C+RF+ TGFC +GDSCKY HP NN      +      GF + N +  +V    ++ G SS
Sbjct: 61  CSRFVKTGFCPFGDSCKYLHPKNNPPQNSGNQGLRATGFTDINARSSSVDQRIYLAGGSS 120

Query: 121 STGSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 157
             G ++ D +G SWGNLPPSL PPP+GGYP LPFVDWG
Sbjct: 121 FPGDMMRDSMGMSWGNLPPSLKPPPEGGYPLLPFVDWG 155

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BLAST of CSPI01G25540 vs. TrEMBL
Match: M5WL08_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016420mg PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 9.0e-45
Identity = 88/156 (56.41%), Postives = 106/156 (67.95%), Query Frame = 1


Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNRSFPHSFHFRPRIC 60
           MPLGKYYC+YCDK+FQDTP AR+RHLQ L H +AKA W+DSFKD + ++         +C
Sbjct: 1   MPLGKYYCEYCDKEFQDTPSARRRHLQGLQHLRAKAQWYDSFKDPSHAYTEGL--TKGVC 60

Query: 61  NRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSST 120
           NRF+ TGFC YGDSC+Y HP NN  N     +    G  +N Q      N+ V G SS  
Sbjct: 61  NRFVKTGFCPYGDSCRYLHPKNNQQNMVTQGA---PGLIDNNQSSTFQENQLV-GGSSLP 120

Query: 121 GSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 157
             ++ D +G SWGNLPPSLMPPP+GGYPPLPFVDWG
Sbjct: 121 DVVVRDSMGMSWGNLPPSLMPPPEGGYPPLPFVDWG 150

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BLAST of CSPI01G25540 vs. TrEMBL
Match: A0A067JTM5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23183 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 2.0e-44
Identity = 89/156 (57.05%), Postives = 111/156 (71.15%), Query Frame = 1


Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNRSFPHSFHFRPRIC 60
           MPLGKYYCDYC+K+FQDT  ARKRHLQS SH +AK+LW+ S +  + S  ++   +  IC
Sbjct: 1   MPLGKYYCDYCEKEFQDTAIARKRHLQSASHVRAKSLWYASLRSGDPSQTYADGAKG-IC 60

Query: 61  NRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSST 120
           NRF+ TGFC YGDSCKY HPNN+N+   N  +   AG  +N Q P +P ++ V G SS  
Sbjct: 61  NRFVKTGFCPYGDSCKYLHPNNSNNLQNNVGTSQAAGLMDNVQSPFIPGSQLV-GGSSLP 120

Query: 121 GSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 157
           G ++ D +G  WGNLPPSL PPP+GGY PLPFVDWG
Sbjct: 121 GEMLRDSMGMPWGNLPPSLKPPPEGGYLPLPFVDWG 154

[Close]

BLAST of CSPI01G25540 vs. TAIR10
Match: AT5G26749.2 (AT5G26749.2 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 142.5 bits (358), Expect = 2.2e-34
Identity = 78/176 (44.32%), Postives = 99/176 (56.25%), Query Frame = 1


Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNRSFPHSFHFRPR-I 60
           MP GKYYCDYC+K+FQDT  ARKRHLQS  H +AKALW+ S    +   P   +F  + +
Sbjct: 1   MPSGKYYCDYCEKEFQDTQVARKRHLQSKPHLRAKALWYSS-SSSDLVNPQVSNFATKGL 60

Query: 61  CNRFLST-------------------GFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPE 120
           CNRF+++                    FC +GDSC+YFHPNNN  +T         GF  
Sbjct: 61  CNRFITSVRRIDFVSLCSSFLAISGCNFCPFGDSCRYFHPNNNTGST---------GFTN 120

Query: 121 NYQPPNVPVNRFVDGNSSSTGSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 157
           N Q     +N+     S+     +S R GT W +LPPSL PPP+ GYP LPF+DWG
Sbjct: 121 NTQLRVDMLNQQHIQGSTLNRDFVSGRPGTGWFDLPPSLKPPPEQGYPQLPFIDWG 166

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BLAST of CSPI01G25540 vs. NCBI nr
Match: gi|449435572|ref|XP_004135569.1| (PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis sativus])

HSP 1 Score: 343.6 bits (880), Expect = 1.8e-91
Identity = 155/156 (99.36%), Postives = 156/156 (100.00%), Query Frame = 1


Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNRSFPHSFHFRPRIC 60
           MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFN+SFPHSFHFRPRIC
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRIC 60

Query: 61  NRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSST 120
           NRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSST
Sbjct: 61  NRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSST 120

Query: 121 GSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 157
           GSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG
Sbjct: 121 GSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 156

[Close]

BLAST of CSPI01G25540 vs. NCBI nr
Match: gi|659099282|ref|XP_008450521.1| (PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis melo])

HSP 1 Score: 320.1 bits (819), Expect = 2.2e-84
Identity = 145/157 (92.36%), Postives = 153/157 (97.45%), Query Frame = 1


Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNRSFPHSFHFRPRIC 60
           MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKD N++FPHSFHFRPRIC
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRIC 60

Query: 61  NRFLSTGFCQYGDSCKYFHP-NNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSS 120
           NRFLSTGFCQYGDSCKYFHP NN+NDNT+NSSS+P+AGFPEN QPPNVP NRFVDGNSSS
Sbjct: 61  NRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFPENNQPPNVPFNRFVDGNSSS 120

Query: 121 TGSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 157
           TGSL+SDRLGTSWGNLPPSLMPPP+GGYPPLPFVDWG
Sbjct: 121 TGSLVSDRLGTSWGNLPPSLMPPPEGGYPPLPFVDWG 157

[Close]

BLAST of CSPI01G25540 vs. NCBI nr
Match: gi|731415967|ref|XP_010659728.1| (PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X1 [Vitis vinifera])

HSP 1 Score: 209.1 bits (531), Expect = 5.4e-51
Identity = 97/156 (62.18%), Postives = 118/156 (75.64%), Query Frame = 1


Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNRSFPHSFHFRPRIC 60
           MPLGKY+CDYCDKQFQDTP ARKRHLQ L HQ+AKALW+DSF+D N+    +  +   +C
Sbjct: 1   MPLGKYHCDYCDKQFQDTPSARKRHLQGLQHQRAKALWYDSFRDPNQI--QAEGYGKGVC 60

Query: 61  NRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSST 120
           NRF+ TGFCQYGDSCKYFHP  +  NT N+ S P+ GFP+N Q  + P N+ V G     
Sbjct: 61  NRFVRTGFCQYGDSCKYFHPKQSLQNT-NTQSIPVTGFPDNIQSLSNPGNQLV-GGGPLP 120

Query: 121 GSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 157
           G+++ D +G SWGNLPPSL PPP+GGYPPLPF+DWG
Sbjct: 121 GNVVKDSMGNSWGNLPPSLKPPPEGGYPPLPFLDWG 152

[Close]

BLAST of CSPI01G25540 vs. NCBI nr
Match: gi|470132887|ref|XP_004302306.1| (PREDICTED: zinc finger CCCH domain-containing protein 3 [Fragaria vesca subsp. vesca])

HSP 1 Score: 199.1 bits (505), Expect = 5.6e-48
Identity = 94/156 (60.26%), Postives = 114/156 (73.08%), Query Frame = 1


Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNRSFPHSFHFRPRIC 60
           MPLGKY C+YC+KQFQDTP+AR+RHLQSL H +AKA WFDSFKD N ++  S      +C
Sbjct: 1   MPLGKYDCEYCNKQFQDTPYARRRHLQSLQHLRAKAQWFDSFKDPNDAYAQS--LGRGVC 60

Query: 61  NRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSST 120
           NRF++TGFCQYGD+CKYFHP NN  NT    +   +G  +N Q   +  N+ V G SS  
Sbjct: 61  NRFVNTGFCQYGDACKYFHPKNNQQNTITQGA---SGVTDNSQSSTIQGNQMVAG-SSLP 120

Query: 121 GSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 157
             ++ D +G SWGNLPPSLMPPP+GGYPPLPFVDWG
Sbjct: 121 DVVVRDNMGMSWGNLPPSLMPPPEGGYPPLPFVDWG 150

[Close]

BLAST of CSPI01G25540 vs. NCBI nr
Match: gi|567871303|ref|XP_006428241.1| (hypothetical protein CICLE_v10012993mg [Citrus clementina])

HSP 1 Score: 189.1 bits (479), Expect = 5.8e-45
Identity = 88/158 (55.70%), Postives = 110/158 (69.62%), Query Frame = 1


Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNRSFPHSFHFRPR-I 60
           MPLGKYYCDYCDKQFQDT FARKRHLQ + H +AKALW+DS  + N+++P  F   P+ +
Sbjct: 1   MPLGKYYCDYCDKQFQDTYFARKRHLQGIQHLRAKALWYDSLNETNQTYPDGF---PKGV 60

Query: 61  CNRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPE-NYQPPNVPVNRFVDGNSS 120
           C+RF+ TGFC +GDSCKY HP NN      +      GF + N +  +V    ++ G SS
Sbjct: 61  CSRFVKTGFCPFGDSCKYLHPKNNPPQNSGNQGLRATGFTDINARSSSVDQRIYLAGGSS 120

Query: 121 STGSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 157
             G ++ D +G SWGNLPPSL PPP+GGYP LPFVDWG
Sbjct: 121 FPGDMMRDSMGMSWGNLPPSLKPPPEGGYPLLPFVDWG 155

The following BLAST results are available for this feature:

BLAST of CSPI01G25540 vs. Swiss-Prot


Match Name	E-value	Identity	Description
C3H3_ORYSJ	1.1e-35	48.54	Zinc finger CCCH domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=...	[more]
ZMAT5_BOVIN	1.1e-16	31.79	Zinc finger matrin-type protein 5 OS=Bos taurus GN=ZMAT5 PE=2 SV=1	[more]
ZMAT5_HUMAN	2.8e-15	33.14	Zinc finger matrin-type protein 5 OS=Homo sapiens GN=ZMAT5 PE=1 SV=1	[more]
ZMAT5_MOUSE	3.7e-15	30.64	Zinc finger matrin-type protein 5 OS=Mus musculus GN=Zmat5 PE=2 SV=1	[more]
ZMAT5_DANRE	2.6e-13	28.49	Zinc finger matrin-type protein 5 OS=Danio rerio GN=zmat5 PE=2 SV=1	[more]

BLAST of CSPI01G25540 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M1B0_CUCSA	1.3e-91	99.36	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560650 PE=4 SV=1	[more]
D7UA82_VITVI	3.8e-51	62.18	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g00610 PE=4 SV=...	[more]
V4SWC1_9ROSI	4.0e-45	55.70	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012993mg PE=4 SV=1	[more]
M5WL08_PRUPE	9.0e-45	56.41	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016420mg PE=4 SV=1	[more]
A0A067JTM5_JATCU	2.0e-44	57.05	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23183 PE=4 SV=1	[more]

BLAST of CSPI01G25540 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G26749.2	2.2e-34	44.32	C2H2 and C2HC zinc fingers superfamily protein	[more]

BLAST of CSPI01G25540 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449435572\|ref\|XP_004135569.1\|	1.8e-91	99.36	PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis sativus]	[more]
gi\|659099282\|ref\|XP_008450521.1\|	2.2e-84	92.36	PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis melo]	[more]
gi\|731415967\|ref\|XP_010659728.1\|	5.4e-51	62.18	PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X1 [Vitis vinife...	[more]
gi\|470132887\|ref\|XP_004302306.1\|	5.6e-48	60.26	PREDICTED: zinc finger CCCH domain-containing protein 3 [Fragaria vesca subsp. v...	[more]
gi\|567871303\|ref\|XP_006428241.1\|	5.8e-45	55.70	hypothetical protein CICLE_v10012993mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000571	Znf_CCCH
IPR003604	Matrin/U1-like-C_Znf_C2H2
IPR013085	U1-CZ_Znf_C2H2

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding
GO:0003676	nucleic acid binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006468	protein phosphorylation
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004674	protein serine/threonine kinase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G25540.1	CSPI01G25540.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	GENE3D	G3DSA:4.10.1000.10		coord: 54..80 score: 1.
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 56..80 score: 2.
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 54..81 score: 2.
IPR000571	Zinc finger, CCCH-type	PROFILE	PS50103	ZF_C3H1	coord: 55..82 score: 14
IPR000571	Zinc finger, CCCH-type	unknown	SSF90229	CCCH zinc finger	coord: 52..82 score: 1.5
IPR003604	Zinc finger, U1-type	SMART	SM00451	ZnF_U1_5	coord: 3..38 score: 3.
IPR013085	Zinc finger, U1-C type	PFAM	PF06220	zf-U1	coord: 5..36 score: 1.
None	No IPR available	PANTHER	PTHR16465	NUCLEASE-RELATED	coord: 2..156 score: 1.2
None	No IPR available	PANTHER	PTHR16465:SF0	ZINC FINGER MATRIN-TYPE PROTEIN 5	coord: 2..156 score: 1.2
None	No IPR available	unknown	SSF57667	beta-beta-alpha zinc fingers	coord: 4..48 score: 4.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G25540	Cla005152	Watermelon (97103) v1	cpiwmB015
CSPI01G25540	Csa1G560650	Cucumber (Chinese Long) v2	cpicuB001
CSPI01G25540	MELO3C015248	Melon (DHL92) v3.5.1	cpimeB061
CSPI01G25540	ClCG03G017800	Watermelon (Charleston Gray)	cpiwcgB042
CSPI01G25540	Lsi06G000320	Bottle gourd (USVL1VR-Ls)	cpilsiB076
CSPI01G25540	MELO3C015247.2	Melon (DHL92) v3.6.1	cpimedB055
CSPI01G25540	CsaV3_1G037970	Cucumber (Chinese Long) v3	cpicucB000
CSPI01G25540	Cla97C03G068210	Watermelon (97103) v2	cpiwmbB037
CSPI01G25540	Cucsa.050840	Cucumber (Gy14) v1	cgycpiB034
CSPI01G25540	CmaCh11G012250	Cucurbita maxima (Rimu)	cmacpiB105
CSPI01G25540	CmoCh11G012780	Cucurbita moschata (Rifu)	cmocpiB099
CSPI01G25540	CsGy1G024900	Cucumber (Gy14) v2	cgybcpiB002

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G25540	Cucurbita pepo (Zucchini)	cpecpiB367
CSPI01G25540	Cucurbita pepo (Zucchini)	cpecpiB664
CSPI01G25540	Melon (DHL92) v3.6.1	cpimedB036
CSPI01G25540	Wax gourd	cpiwgoB087
CSPI01G25540	Cucurbita maxima (Rimu)	cmacpiB054
CSPI01G25540	Cucurbita moschata (Rifu)	cmocpiB045