CmoCh11G012780 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh11G012780
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Nucleic acid binding / zinc ion binding protein
Location	Cmo_Chr11 : 8433880 .. 8436071 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTATAAGAGAGGTGAATCCTTGCATTTTGTTGTTTGATTTGGAGGAAGAAGAAGAAGAAGAAGAAAAAGAAAGGAGGAGAAGAAAGAAGATGCCTCTCGGAAAATATTACTGCGACTACTGCGAGAAGCAATTCCAAGACACTCCGTTTGCTCGAAAGCGCCATCTTCAAAGCCTCTCCCATCACAAGGCCAAAGCTCTCTGGTTCGACTCCTTCAGAGGTGAGGTCCTCCTCCTCCGTCTCTCCGCTTTCTCCTCTTCCCCTCATATCCTCCTCCTCTCTTCCTAACTCTCTCTTCCTCTTCCTCTTCCTTGCAGACTCCAATCAACCTCTCTCTCATGCCTTTCCAACACGCCTCTGTAACCGATTCCTCACTACGGTATATTCTTCTTTCTATTTAACCTACCTTTTGCTCTTTCCGATTTCATTCTTTGCTCTCCACGATTCCCAAGGGCTTTTGCCAGTACGGTGATTCTTGCAACTATTTTCACTCCAACAACAATCCGCAGTACTCGAGTTCGCACCCCATTGCAGGTTAACCCTAAACTCTACCTTACTCTATCTCAACAACCCAATGCAAAATTCGAAACCTAATGCTATTTATTTCGATCCATTTCCGGTCTGATTCCATATAAAAATCACAGGTTTTCCGGAGAATAATCAAGCCCCAAATATTCCGGTGAATCAATTCATGGAGGGCAGTTCGTTGACAGGTAACTTGGAACTGAAATCATCACATAGTTTTGTGTTCCATATTTTATTTGTTCATTCATAAAATCCTGATGTTGGTTAAATTTTGAGTGGATCATTACATACATCATTTACGGGAGCAAATTGCCGCCCACTCATACGAATGATGACCAACCAACTCCCATCTCCGCTCGATTTGAACAGGACTTGAACTCTCTTAGTGCTTGTTGTGCATCTGCAAATCATTCTTTGTTTGAACAGCATCCATCATTGTTTTTTTGTATCTGTAAAGCATTCTGCGTTCTGCTACACATTTGAATCTTTTATCCCAGGATTTGATGGCCCTCTAATCTTTCATATTTTTCAACTTTCTATGCTTGCGTTTGATCTCAGGTAGTTTAGATAGATTGAGAACATCATGGGGAAATTTACCTCCATCATTGATGCCTCCTCCAGAGGGTGGTTACCCACCTCTCCCTTTTGTAGATTGGGGATAATCCACGAATCAGTTACTGGTACAAGTCTACTCGGCTTCTCTTGTTTTTAACCTCCTACTCTATATAAAGCACCAATTTCATCAAATTTGGAATCCTACACATCTAGACTATGAGCCTTTCATTGCTTTCCTTTCAAGTACCATATTCTTCAACACATGACTGTCTTTAACTTGTCCTCTGTTAATGTTTTACCATTTAGTTGCACCACTTATGTGGAGATTATGGTGCTCTAAACTCGTTCGAGATCGACACTGACATAATGTAATATGAGGAGAGTTAATGAAGCAAATAAAAGAACACCTAATTCCAAGATCTTTTCACTGGCAAACTCAACATTTCATTCATAAAACAGGCATGGTCAGTTCCAAATGTTGTTGATCTCGACAGAAATGAGTACAAAGAACATATGAATGCCTTTTCGGGCTACATATATTAGCCCCCCTTGTATAGCATATCATTATTTATTTCATTCAAGCATCTTGACAAGCAGGAATCACCCCAATACTATACATTGGTTGCCTAATAGCTTGATGCCAGAACCTGTAACAAGGAAGCAATAAATTGCATCTGGGTGTCTTCATCTATGGTTTCGAATAGAGGGACATGAACAAATAGTGATTTGATGCCATTCTCTTGGGCGCAGCGGAGGGAATGATAGTAGACATAATTGCACACAAAGCGACCAGCATCGTTTGAAGTCATCACTTCATATCCCTTCTTCGCCAATGCCTTGGTTATTTCCTCCACTGGAAGAGAAGTCTGCAGGGCAGAGATGGGTAGTAAAGGAATCAGGAAAAAAAGAAGAGAGAAAACTTTCATGATTTGCATCAAGAGTTAAGAACCAGCAAAAAGGTGCTATAGTTTCTATAAGTTTATGGTTATGCCTTTGCAATCTTCTTCGATTAAATTCAACTTGTTACAATGTTTCGATGTTGTGACACAATGAGATGTGATTATGTAAACAAGTACATTATTTAAAATTACATTTCAATATTTTCACCC

mRNA sequence

ATGGGTATAAGAGAGGTGAATCCTTGCATTTTGTTGTTTGATTTGGAGGAAGAAGAAGAAGAAGAAGAAAAAGAAAGGAGGAGAAGAAAGAAGATGCCTCTCGGAAAATATTACTGCGACTACTGCGAGAAGCAATTCCAAGACACTCCGTTTGCTCGAAAGCGCCATCTTCAAAGCCTCTCCCATCACAAGGCCAAAGCTCTCTGGTTCGACTCCTTCAGAGACTCCAATCAACCTCTCTCTCATGCCTTTCCAACACGCCTCTGTAACCGATTCCTCACTACGGGCTTTTGCCAGTACGGTGATTCTTGCAACTATTTTCACTCCAACAACAATCCGCAGTACTCGAGTTCGCACCCCATTGCAGGTTTTCCGGAGAATAATCAAGCCCCAAATATTCCGGTGAATCAATTCATGGAGGGCAGTTCGTTGACAGGTAGTTTAGATAGATTGAGAACATCATGGGGAAATTTACCTCCATCATTGATGCCTCCTCCAGAGGGTGGTTACCCACCTCTCCCTTTTGTAGATTGGGGATAATCCACGAATCAGTTACTGCGGAGGGAATGATAGTAGACATAATTGCACACAAAGCGACCAGCATCGTTTGAAGTCATCACTTCATATCCCTTCTTCGCCAATGCCTTGGTTATTTCCTCCACTGGAAGAGAAGTCTGCAGGGCAGAGATGGGTAGTAAAGGAATCAGGAAAAAAAGAAGAGAGAAAACTTTCATGATTTGCATCAAGAGTTAAGAACCAGCAAAAAGGTGCTATAGTTTCTATAAGTTTATGGTTATGCCTTTGCAATCTTCTTCGATTAAATTCAACTTGTTACAATGTTTCGATGTTGTGACACAATGAGATGTGATTATGTAAACAAGTACATTATTTAAAATTACATTTCAATATTTTCACCC

Coding sequence (CDS)

ATGGGTATAAGAGAGGTGAATCCTTGCATTTTGTTGTTTGATTTGGAGGAAGAAGAAGAAGAAGAAGAAAAAGAAAGGAGGAGAAGAAAGAAGATGCCTCTCGGAAAATATTACTGCGACTACTGCGAGAAGCAATTCCAAGACACTCCGTTTGCTCGAAAGCGCCATCTTCAAAGCCTCTCCCATCACAAGGCCAAAGCTCTCTGGTTCGACTCCTTCAGAGACTCCAATCAACCTCTCTCTCATGCCTTTCCAACACGCCTCTGTAACCGATTCCTCACTACGGGCTTTTGCCAGTACGGTGATTCTTGCAACTATTTTCACTCCAACAACAATCCGCAGTACTCGAGTTCGCACCCCATTGCAGGTTTTCCGGAGAATAATCAAGCCCCAAATATTCCGGTGAATCAATTCATGGAGGGCAGTTCGTTGACAGGTAGTTTAGATAGATTGAGAACATCATGGGGAAATTTACCTCCATCATTGATGCCTCCTCCAGAGGGTGGTTACCCACCTCTCCCTTTTGTAGATTGGGGATAA

Homology

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BLAST of CmoCh11G012780 vs. Swiss-Prot
Match: C3H3_ORYSJ (Zinc finger CCCH domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=Os01g0252200 PE=2 SV=2)

HSP 1 Score: 168.3 bits (425), Expect = 7.6e-41
Identity = 88/168 (52.38%), Postives = 104/168 (61.90%), Query Frame = 1


Query: 32  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHHKAKALWFDSFRDSN--------QPLSH- 91
           MPLGKYYCDYCEKQFQDTP ARKRHL    HH+A+ALW+D+ R            PL H 
Sbjct: 1   MPLGKYYCDYCEKQFQDTPAARKRHLDGAQHHRARALWYDAVRRQELHGGGGGAPPLLHQ 60

Query: 92  --AFPTRLCNRFLTTGFCQYGDSCNYFHSN---NNPQYSSSHPIAGFPENNQA------P 151
             A    +C  F+ TG C++GDSC YFH      NP  + S P++G P   Q+      P
Sbjct: 61  PGAAAIGVCQHFVRTGTCKFGDSCRYFHPKPPPANPGPAPSGPVSG-PMAQQSNIQGSQP 120

Query: 152 NIPVNQFMEGSSLTGSLDRLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 180
           N    Q  +GSS +G++    TSWGNLPPSL PPPEGGYPP PFVDWG
Sbjct: 121 NFVGYQAADGSSFSGNILGGHTSWGNLPPSLRPPPEGGYPPFPFVDWG 167

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BLAST of CmoCh11G012780 vs. Swiss-Prot
Match: ZMAT5_HUMAN (Zinc finger matrin-type protein 5 OS=Homo sapiens GN=ZMAT5 PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 6.9e-18
Identity = 56/167 (33.53%), Postives = 81/167 (48.50%), Query Frame = 1


Query: 36  KYYCDYCEKQFQDTPFARKRHLQSLSHHKAKALWFDSFRDSNQPLSHAFPTRLCNRFLTT 95
           +Y+CDYC++ FQD    RK+HL  L H KAK +W+D FRD+   L      R C +FL T
Sbjct: 4   RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLDEQNKRPCRKFLLT 63

Query: 96  GFCQYGDSCNYFHSNNNPQYSSSHPIAGFPENNQ----APNIP---VNQFME------GS 155
           G C +G +C + H +       S  +       +    AP +P   +  ++E       S
Sbjct: 64  GQCDFGSNCRFSHMSERDLQELSIQVEEERRAREWLLDAPELPEGHLEDWLEKRAKRLSS 123

Query: 156 SLTGSLDRLRTS-------W---GNLPPSLMPPPEGGYPPLPFVDWG 180
           + +   + +RT+       W     LPPSL  PP GG+P  P V WG
Sbjct: 124 APSSRAEPIRTTVFQYPVGWPPVQELPPSLRAPPPGGWPLQPRVQWG 170

[Close]

BLAST of CmoCh11G012780 vs. Swiss-Prot
Match: ZMAT5_BOVIN (Zinc finger matrin-type protein 5 OS=Bos taurus GN=ZMAT5 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 9.0e-18
Identity = 55/167 (32.93%), Postives = 81/167 (48.50%), Query Frame = 1


Query: 36  KYYCDYCEKQFQDTPFARKRHLQSLSHHKAKALWFDSFRDSNQPLSHAFPTRLCNRFLTT 95
           +Y+CDYC++ FQD    RK+HL  L H KAK LW+D FRD+   L      R C +FL T
Sbjct: 4   RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKLWYDMFRDAAAILLDEQNKRPCRKFLLT 63

Query: 96  GFCQYGDSCNYFHSNN------NPQYSSSHPIAGFP-ENNQAPNIPVNQFME------GS 155
           G C +G +C + H +       + Q         +P +  + P + +  ++E       S
Sbjct: 64  GQCDFGSNCRFSHMSERDLQELSVQVEEERRAREWPLDVAELPEVCLEDWLEKRAKRLSS 123

Query: 156 SLTGSLDRLRTS-------W---GNLPPSLMPPPEGGYPPLPFVDWG 180
           + +   + +R +       W     LPPSL  PP GG+P  P V WG
Sbjct: 124 APSSRAEPVRATVFQYPVGWPPVQELPPSLRAPPPGGWPLQPSVQWG 170

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BLAST of CmoCh11G012780 vs. Swiss-Prot
Match: ZMAT5_MOUSE (Zinc finger matrin-type protein 5 OS=Mus musculus GN=Zmat5 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.8e-17
Identity = 55/167 (32.93%), Postives = 80/167 (47.90%), Query Frame = 1


Query: 36  KYYCDYCEKQFQDTPFARKRHLQSLSHHKAKALWFDSFRDSNQPLSHAFPTRLCNRFLTT 95
           +Y+CDYC++ FQD    RK+HL  L H KAK +W+D FRD+   L      R C +FL T
Sbjct: 4   RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLDEQNKRPCRKFLLT 63

Query: 96  GFCQYGDSCNYFHSNN------NPQYSSSHPIAGFP-ENNQAPNIPVNQFME------GS 155
           G C +G +C + H +       + Q         +P E  + P   +  ++E       S
Sbjct: 64  GQCDFGSNCRFSHMSEQDLQELSVQVEEERRAREWPLETAELPEGHLEDWLEKRAKRLSS 123

Query: 156 SLTGSLDRLRTS-------W---GNLPPSLMPPPEGGYPPLPFVDWG 180
           + +   + +RT+       W     LPPSL  PP GG+  L  V WG
Sbjct: 124 APSSRAEPIRTTVFQYPVGWPPMQELPPSLRAPPPGGWSVLSKVQWG 170

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BLAST of CmoCh11G012780 vs. Swiss-Prot
Match: ZMAT5_DANRE (Zinc finger matrin-type protein 5 OS=Danio rerio GN=zmat5 PE=2 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 9.9e-17
Identity = 51/170 (30.00%), Postives = 80/170 (47.06%), Query Frame = 1


Query: 36  KYYCDYCEKQFQDTPFARKRHLQSLSHHKAKALWFDSFRDSNQPLSHAFPTRLCNRFLTT 95
           +YYCDYC++ FQD    RK+HL  + HH+AK  WFD+FRD+   L+      +C +F+ T
Sbjct: 4   RYYCDYCDRSFQDNLHNRKKHLNGVQHHRAKKAWFDNFRDAATLLNDERSKEVCRKFVQT 63

Query: 96  GFCQYGDSCNYFHSNNNPQYSSSHPI------AGFPENNQAPNIPVNQFME------GSS 155
           G C +G SC + H +          I         P+ + +    V++++        + 
Sbjct: 64  GQCVFGTSCRFSHMSEKQMKMLEQKIDDEKRQKEDPDQDGSSERSVDEWLSRREKKLAAL 123

Query: 156 LTGSLDRLR--------------TSWGNLPPSLMPPPEGGYPPLPFVDWG 180
            +G + R+                S  +LPPSL PPP GG+      +WG
Sbjct: 124 TSGRVLRMEEEECTENIEIPPYLLSIPDLPPSLHPPPAGGWRVTVHNEWG 173

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BLAST of CmoCh11G012780 vs. TrEMBL
Match: A0A0A0M1B0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560650 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.3e-63
Identity = 120/156 (76.92%), Postives = 132/156 (84.62%), Query Frame = 1


Query: 32  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHHKAKALWFDSFRDSNQPLSHA--FPTRLC 91
           MPLGKYYCDYC+KQFQDTPFARKRHLQSLSH KAKALWFDSF+D NQ   H+  F  R+C
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRIC 60

Query: 92  NRFLTTGFCQYGDSCNYFHSNN---NPQYSSSHPIAGFPENNQAPNIPVNQFMEG-SSLT 151
           NRFL+TGFCQYGDSC YFH NN   N   SSS+P+AGFPEN Q PN+PVN+F++G SS T
Sbjct: 61  NRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSST 120

Query: 152 GSL--DRLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 180
           GSL  DRL TSWGNLPPSLMPPP+GGYPPLPFVDWG
Sbjct: 121 GSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 156

[Close]

BLAST of CmoCh11G012780 vs. TrEMBL
Match: D7UA82_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g00610 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.1e-49
Identity = 94/152 (61.84%), Postives = 114/152 (75.00%), Query Frame = 1


Query: 32  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHHKAKALWFDSFRDSNQPLSHAFPTRLCNR 91
           MPLGKY+CDYC+KQFQDTP ARKRHLQ L H +AKALW+DSFRD NQ  +  +   +CNR
Sbjct: 1   MPLGKYHCDYCDKQFQDTPSARKRHLQGLQHQRAKALWYDSFRDPNQIQAEGYGKGVCNR 60

Query: 92  FLTTGFCQYGDSCNYFHSNNNPQYSS--SHPIAGFPENNQAPNIPVNQFMEGSSLTGSL- 151
           F+ TGFCQYGDSC YFH   + Q ++  S P+ GFP+N Q+ + P NQ + G  L G++ 
Sbjct: 61  FVRTGFCQYGDSCKYFHPKQSLQNTNTQSIPVTGFPDNIQSLSNPGNQLVGGGPLPGNVV 120

Query: 152 -DRLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 180
            D +  SWGNLPPSL PPPEGGYPPLPF+DWG
Sbjct: 121 KDSMGNSWGNLPPSLKPPPEGGYPPLPFLDWG 152

[Close]

BLAST of CmoCh11G012780 vs. TrEMBL
Match: M5WL08_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016420mg PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 9.3e-46
Identity = 87/150 (58.00%), Postives = 104/150 (69.33%), Query Frame = 1


Query: 32  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHHKAKALWFDSFRDSNQPLSHAFPTRLCNR 91
           MPLGKYYC+YC+K+FQDTP AR+RHLQ L H +AKA W+DSF+D +   +      +CNR
Sbjct: 1   MPLGKYYCEYCDKEFQDTPSARRRHLQGLQHLRAKAQWYDSFKDPSHAYTEGLTKGVCNR 60

Query: 92  FLTTGFCQYGDSCNYFHSNNNPQYSSSHPIAGFPENNQAPNIPVNQFMEGSSLTGSL--D 151
           F+ TGFC YGDSC Y H  NN Q   +    G  +NNQ+     NQ + GSSL   +  D
Sbjct: 61  FVKTGFCPYGDSCRYLHPKNNQQNMVTQGAPGLIDNNQSSTFQENQLVGGSSLPDVVVRD 120

Query: 152 RLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 180
            +  SWGNLPPSLMPPPEGGYPPLPFVDWG
Sbjct: 121 SMGMSWGNLPPSLMPPPEGGYPPLPFVDWG 150

[Close]

BLAST of CmoCh11G012780 vs. TrEMBL
Match: B9I6N1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s00620g PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.3e-42
Identity = 92/155 (59.35%), Postives = 107/155 (69.03%), Query Frame = 1


Query: 32  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHHKAKALWFDSFRDSNQPLSH-----AFPT 91
           MP+GKYYCDYC+KQFQDTP ARKRHLQS SH +AK+LWF    +SN   S+      F  
Sbjct: 1   MPVGKYYCDYCDKQFQDTPHARKRHLQSSSHLRAKSLWFSRNSNSNTLNSNNTDAGGFVK 60

Query: 92  RLCNRFLTTGFCQYGDSCNYFHSNNNPQYSSSHPIAGFPENNQAPNIPVNQFMEGSSLTG 151
            LCNRF+ TGFC YGDSC Y H+N    +++S   A F +N Q+P +P NQ   GSS  G
Sbjct: 61  GLCNRFVKTGFCPYGDSCKYLHTN----FATSQGTA-FKDNVQSPTMPGNQLAGGSSFPG 120

Query: 152 SLDR--LRTSWGNLPPSLMPPPEGGYPPLPFVDWG 180
              R  +  SWGNLPPSL PPPEGGYPPLPFVDWG
Sbjct: 121 VAVRESMGMSWGNLPPSLKPPPEGGYPPLPFVDWG 150

[Close]

BLAST of CmoCh11G012780 vs. TrEMBL
Match: V4SWC1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012993mg PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 2.1e-42
Identity = 89/156 (57.05%), Postives = 106/156 (67.95%), Query Frame = 1


Query: 32  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHHKAKALWFDSFRDSNQPLSHAFPTRLCNR 91
           MPLGKYYCDYC+KQFQDT FARKRHLQ + H +AKALW+DS  ++NQ     FP  +C+R
Sbjct: 1   MPLGKYYCDYCDKQFQDTYFARKRHLQGIQHLRAKALWYDSLNETNQTYPDGFPKGVCSR 60

Query: 92  FLTTGFCQYGDSCNYFHSNNNPQYSSSHP---IAGFPENNQAPNIPVNQ---FMEGSSLT 151
           F+ TGFC +GDSC Y H  NNP  +S +      GF + N A +  V+Q      GSS  
Sbjct: 61  FVKTGFCPFGDSCKYLHPKNNPPQNSGNQGLRATGFTDIN-ARSSSVDQRIYLAGGSSFP 120

Query: 152 GSL--DRLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 180
           G +  D +  SWGNLPPSL PPPEGGYP LPFVDWG
Sbjct: 121 GDMMRDSMGMSWGNLPPSLKPPPEGGYPLLPFVDWG 155

[Close]

BLAST of CmoCh11G012780 vs. TAIR10
Match: AT5G26749.2 (AT5G26749.2 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 142.9 bits (359), Expect = 1.9e-34
Identity = 81/172 (47.09%), Postives = 96/172 (55.81%), Query Frame = 1


Query: 32  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHHKAKALWFDSFRDS--NQPLSHAFPTRLC 91
           MP GKYYCDYCEK+FQDT  ARKRHLQS  H +AKALW+ S      N  +S+     LC
Sbjct: 1   MPSGKYYCDYCEKEFQDTQVARKRHLQSKPHLRAKALWYSSSSSDLVNPQVSNFATKGLC 60

Query: 92  NRFLTT-------------------GFCQYGDSCNYFHSNNNPQYSSSHPIAGFPENNQA 151
           NRF+T+                    FC +GDSC YFH NNN   +      GF  N Q 
Sbjct: 61  NRFITSVRRIDFVSLCSSFLAISGCNFCPFGDSCRYFHPNNNTGST------GFTNNTQL 120

Query: 152 PNIPVN-QFMEGSSLTGSL--DRLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 180
               +N Q ++GS+L       R  T W +LPPSL PPPE GYP LPF+DWG
Sbjct: 121 RVDMLNQQHIQGSTLNRDFVSGRPGTGWFDLPPSLKPPPEQGYPQLPFIDWG 166

[Close]

BLAST of CmoCh11G012780 vs. NCBI nr
Match: gi|659099282|ref|XP_008450521.1| (PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis melo])

HSP 1 Score: 256.9 bits (655), Expect = 2.6e-65
Identity = 123/157 (78.34%), Postives = 133/157 (84.71%), Query Frame = 1


Query: 32  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHHKAKALWFDSFRDSNQPLSHA--FPTRLC 91
           MPLGKYYCDYC+KQFQDTPFARKRHLQSLSH KAKALWFDSF+DSNQ   H+  F  R+C
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRIC 60

Query: 92  NRFLTTGFCQYGDSCNYFH----SNNNPQYSSSHPIAGFPENNQAPNIPVNQFMEG-SSL 151
           NRFL+TGFCQYGDSC YFH     N+N   SSSHPIAGFPENNQ PN+P N+F++G SS 
Sbjct: 61  NRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFPENNQPPNVPFNRFVDGNSSS 120

Query: 152 TGSL--DRLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 180
           TGSL  DRL TSWGNLPPSLMPPPEGGYPPLPFVDWG
Sbjct: 121 TGSLVSDRLGTSWGNLPPSLMPPPEGGYPPLPFVDWG 157

[Close]

BLAST of CmoCh11G012780 vs. NCBI nr
Match: gi|449435572|ref|XP_004135569.1| (PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis sativus])

HSP 1 Score: 250.8 bits (639), Expect = 1.9e-63
Identity = 120/156 (76.92%), Postives = 132/156 (84.62%), Query Frame = 1


Query: 32  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHHKAKALWFDSFRDSNQPLSHA--FPTRLC 91
           MPLGKYYCDYC+KQFQDTPFARKRHLQSLSH KAKALWFDSF+D NQ   H+  F  R+C
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRIC 60

Query: 92  NRFLTTGFCQYGDSCNYFHSNN---NPQYSSSHPIAGFPENNQAPNIPVNQFMEG-SSLT 151
           NRFL+TGFCQYGDSC YFH NN   N   SSS+P+AGFPEN Q PN+PVN+F++G SS T
Sbjct: 61  NRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSST 120

Query: 152 GSL--DRLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 180
           GSL  DRL TSWGNLPPSLMPPP+GGYPPLPFVDWG
Sbjct: 121 GSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 156

[Close]

BLAST of CmoCh11G012780 vs. NCBI nr
Match: gi|731415967|ref|XP_010659728.1| (PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X1 [Vitis vinifera])

HSP 1 Score: 204.5 bits (519), Expect = 1.5e-49
Identity = 94/152 (61.84%), Postives = 114/152 (75.00%), Query Frame = 1


Query: 32  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHHKAKALWFDSFRDSNQPLSHAFPTRLCNR 91
           MPLGKY+CDYC+KQFQDTP ARKRHLQ L H +AKALW+DSFRD NQ  +  +   +CNR
Sbjct: 1   MPLGKYHCDYCDKQFQDTPSARKRHLQGLQHQRAKALWYDSFRDPNQIQAEGYGKGVCNR 60

Query: 92  FLTTGFCQYGDSCNYFHSNNNPQYSS--SHPIAGFPENNQAPNIPVNQFMEGSSLTGSL- 151
           F+ TGFCQYGDSC YFH   + Q ++  S P+ GFP+N Q+ + P NQ + G  L G++ 
Sbjct: 61  FVRTGFCQYGDSCKYFHPKQSLQNTNTQSIPVTGFPDNIQSLSNPGNQLVGGGPLPGNVV 120

Query: 152 -DRLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 180
            D +  SWGNLPPSL PPPEGGYPPLPF+DWG
Sbjct: 121 KDSMGNSWGNLPPSLKPPPEGGYPPLPFLDWG 152

[Close]

BLAST of CmoCh11G012780 vs. NCBI nr
Match: gi|470132887|ref|XP_004302306.1| (PREDICTED: zinc finger CCCH domain-containing protein 3 [Fragaria vesca subsp. vesca])

HSP 1 Score: 200.3 bits (508), Expect = 2.9e-48
Identity = 91/150 (60.67%), Postives = 110/150 (73.33%), Query Frame = 1


Query: 32  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHHKAKALWFDSFRDSNQPLSHAFPTRLCNR 91
           MPLGKY C+YC KQFQDTP+AR+RHLQSL H +AKA WFDSF+D N   + +    +CNR
Sbjct: 1   MPLGKYDCEYCNKQFQDTPYARRRHLQSLQHLRAKAQWFDSFKDPNDAYAQSLGRGVCNR 60

Query: 92  FLTTGFCQYGDSCNYFHSNNNPQYSSSHPIAGFPENNQAPNIPVNQFMEGSSLTGSL--D 151
           F+ TGFCQYGD+C YFH  NN Q + +   +G  +N+Q+  I  NQ + GSSL   +  D
Sbjct: 61  FVNTGFCQYGDACKYFHPKNNQQNTITQGASGVTDNSQSSTIQGNQMVAGSSLPDVVVRD 120

Query: 152 RLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 180
            +  SWGNLPPSLMPPPEGGYPPLPFVDWG
Sbjct: 121 NMGMSWGNLPPSLMPPPEGGYPPLPFVDWG 150

[Close]

BLAST of CmoCh11G012780 vs. NCBI nr
Match: gi|595831527|ref|XP_007206291.1| (hypothetical protein PRUPE_ppa016420mg [Prunus persica])

HSP 1 Score: 191.4 bits (485), Expect = 1.3e-45
Identity = 87/150 (58.00%), Postives = 104/150 (69.33%), Query Frame = 1


Query: 32  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHHKAKALWFDSFRDSNQPLSHAFPTRLCNR 91
           MPLGKYYC+YC+K+FQDTP AR+RHLQ L H +AKA W+DSF+D +   +      +CNR
Sbjct: 1   MPLGKYYCEYCDKEFQDTPSARRRHLQGLQHLRAKAQWYDSFKDPSHAYTEGLTKGVCNR 60

Query: 92  FLTTGFCQYGDSCNYFHSNNNPQYSSSHPIAGFPENNQAPNIPVNQFMEGSSLTGSL--D 151
           F+ TGFC YGDSC Y H  NN Q   +    G  +NNQ+     NQ + GSSL   +  D
Sbjct: 61  FVKTGFCPYGDSCRYLHPKNNQQNMVTQGAPGLIDNNQSSTFQENQLVGGSSLPDVVVRD 120

Query: 152 RLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 180
            +  SWGNLPPSLMPPPEGGYPPLPFVDWG
Sbjct: 121 SMGMSWGNLPPSLMPPPEGGYPPLPFVDWG 150

The following BLAST results are available for this feature:

BLAST of CmoCh11G012780 vs. Swiss-Prot


Match Name	E-value	Identity	Description
C3H3_ORYSJ	7.6e-41	52.38	Zinc finger CCCH domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=...	[more]
ZMAT5_HUMAN	6.9e-18	33.53	Zinc finger matrin-type protein 5 OS=Homo sapiens GN=ZMAT5 PE=1 SV=1	[more]
ZMAT5_BOVIN	9.0e-18	32.93	Zinc finger matrin-type protein 5 OS=Bos taurus GN=ZMAT5 PE=2 SV=1	[more]
ZMAT5_MOUSE	5.8e-17	32.93	Zinc finger matrin-type protein 5 OS=Mus musculus GN=Zmat5 PE=2 SV=1	[more]
ZMAT5_DANRE	9.9e-17	30.00	Zinc finger matrin-type protein 5 OS=Danio rerio GN=zmat5 PE=2 SV=1	[more]

BLAST of CmoCh11G012780 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M1B0_CUCSA	1.3e-63	76.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560650 PE=4 SV=1	[more]
D7UA82_VITVI	1.1e-49	61.84	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g00610 PE=4 SV=...	[more]
M5WL08_PRUPE	9.3e-46	58.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016420mg PE=4 SV=1	[more]
B9I6N1_POPTR	1.3e-42	59.35	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s00620g PE=4 SV=1	[more]
V4SWC1_9ROSI	2.1e-42	57.05	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012993mg PE=4 SV=1	[more]

BLAST of CmoCh11G012780 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G26749.2	1.9e-34	47.09	C2H2 and C2HC zinc fingers superfamily protein	[more]

BLAST of CmoCh11G012780 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659099282\|ref\|XP_008450521.1\|	2.6e-65	78.34	PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis melo]	[more]
gi\|449435572\|ref\|XP_004135569.1\|	1.9e-63	76.92	PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis sativus]	[more]
gi\|731415967\|ref\|XP_010659728.1\|	1.5e-49	61.84	PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X1 [Vitis vinife...	[more]
gi\|470132887\|ref\|XP_004302306.1\|	2.9e-48	60.67	PREDICTED: zinc finger CCCH domain-containing protein 3 [Fragaria vesca subsp. v...	[more]
gi\|595831527\|ref\|XP_007206291.1\|	1.3e-45	58.00	hypothetical protein PRUPE_ppa016420mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000571	Znf_CCCH
IPR003604	Matrin/U1-like-C_Znf_C2H2
IPR013085	U1-CZ_Znf_C2H2

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding
GO:0003676	nucleic acid binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G012780.1	CmoCh11G012780.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	GENE3D	G3DSA:4.10.1000.10		coord: 85..110 score: 2.
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 86..109 score: 3.
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 83..110 score: 4.
IPR000571	Zinc finger, CCCH-type	PROFILE	PS50103	ZF_C3H1	coord: 83..111 score: 14
IPR000571	Zinc finger, CCCH-type	unknown	SSF90229	CCCH zinc finger	coord: 83..112 score: 7.9
IPR003604	Zinc finger, U1-type	SMART	SM00451	ZnF_U1_5	coord: 34..69 score: 0.
IPR013085	Zinc finger, U1-C type	PFAM	PF06220	zf-U1	coord: 36..67 score: 1.
None	No IPR available	unknown	Coil	Coil	coord: 12..32 scor
None	No IPR available	PANTHER	PTHR16465	NUCLEASE-RELATED	coord: 33..179 score: 3.3
None	No IPR available	unknown	SSF57667	beta-beta-alpha zinc fingers	coord: 35..91 score: 7.14

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh11G012780	Cucsa.050840	Cucumber (Gy14) v1	cgycmoB0051
CmoCh11G012780	Cla005152	Watermelon (97103) v1	cmowmB090
CmoCh11G012780	Csa1G560650	Cucumber (Chinese Long) v2	cmocuB096
CmoCh11G012780	MELO3C015248	Melon (DHL92) v3.5.1	cmomeB103
CmoCh11G012780	ClCG03G017800	Watermelon (Charleston Gray)	cmowcgB102
CmoCh11G012780	CSPI01G25540	Wild cucumber (PI 183967)	cmocpiB099
CmoCh11G012780	Lsi06G000320	Bottle gourd (USVL1VR-Ls)	cmolsiB122
CmoCh11G012780	Cp4.1LG00g02240	Cucurbita pepo (Zucchini)	cmocpeB080
CmoCh11G012780	CsaV3_1G037970	Cucumber (Chinese Long) v3	cmocucB0109
CmoCh11G012780	Cla97C03G068210	Watermelon (97103) v2	cmowmbB102

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh11G012780	Cucumber (Gy14) v1	cgycmoB0050
CmoCh11G012780	Cucurbita maxima (Rimu)	cmacmoB079
CmoCh11G012780	Cucurbita maxima (Rimu)	cmacmoB115
CmoCh11G012780	Wild cucumber (PI 183967)	cmocpiB086
CmoCh11G012780	Cucumber (Chinese Long) v2	cmocuB083
CmoCh11G012780	Cucurbita pepo (Zucchini)	cmocpeB126
CmoCh11G012780	Bottle gourd (USVL1VR-Ls)	cmolsiB136
CmoCh11G012780	Cucumber (Gy14) v2	cgybcmoB036
CmoCh11G012780	Cucumber (Gy14) v2	cgybcmoB048
CmoCh11G012780	Cucumber (Gy14) v2	cgybcmoB049
CmoCh11G012780	Melon (DHL92) v3.6.1	cmomedB111
CmoCh11G012780	Cucumber (Chinese Long) v3	cmocucB0097
CmoCh11G012780	Wax gourd	cmowgoB0165
CmoCh11G012780	Cucurbita moschata (Rifu)	cmocmoB048