Lsi06G000320 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G000320
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Nucleic acid binding / zinc ion binding protein
Location	chr06 : 342445 .. 344174 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTAGCAAAAGATTGCAGGAGAAATTGATTAGAAAGAGAGAAGCTTTAGGAAGGAATCGAAGAATCGAAGATGCCACTGGGAAAATATTACTGCGATTACTGCGAGAAGCAATTCCAAGACACTCCTTTCGCTCGTAAACGCCATCTTCAAAGCCTTTCCCATCAGAAGGCCAAAGCTCTGTGGTTCGACTCCTTCAGTTCAGCTTCTTCTTCCAATCAACAACAACCTTTCTCTGATTCCTTCCACCTCCGACCACGCATCTGTAATCCATTCATCACTACGGTAAGTTCTTCTTCCTTTCCCTTCGCATCGCTTCGCTTCCATTTTCTTTTAACCTAATTTTTGCTTTCCTTCTCCTTCTCCTTCGCCTTCATTTCAAAGGGGTTTTGCCAATATGGTGATTCTTGTAAATATTTCCACCCCAACAACAACAACAATACTACTACGCACAACTCCACTTCCCACCCCATTCCAGGTACGCCGAAATTTATTTTCATTTTCCATCCATTTCCTGTCTATTTGATTCTATTTCAAATTCACAGGTTTCCCGGAAAATAATCAACCCCCAAATATTCCCCTGAATCCATTCCTGGACGGCAGCTCTTTCACAGGTAACTTGAACTTGAACTTGAACTGAATTCCTTACTGCTTATTTTGATTCGTGTTCCACACTTTTTTTGTTTATTTATTATTACCAACAGCAGTGTTTTTTCCCATTCATGGTAACAATCGAGTAATTCCCAGCTCCATTCCTCTTTCATTGACAGCACCCATCATTGTTTATGAACGAACCAACGAACCTATAAATCATTCTGAGTTCTACATATTGTTTGAATCATTTAGGTCCTGTTTACTAACCATTTTGCTTTTAATTTTTAAAAATTAAGCTTACTTCTTTTTCATTTCTTATAATGATTTGCATATTTCTTAAGTATGATGCTGGAATTCTTAGTCAAATTTCAAAACCAAAAACAAATTTTACAAGCTACTTTTTTTAATTTTCAAAATTTGACTTAGTTTTTTAAACCATTAGTGAAAAGTAGATAACAAAAAAATAAATTTAGAGGTGAAAGTAGTCTCTATAAGCTTAATTTTCAAAAACAAAAATCCAAATGGCTATCCAACGGAGTCTTAGTTTTCATGTGTCTGACAGCTTACATTTGATAATTATTCTGAGTGCTTCAGGTAGTTTAGCTAGCGATAGTATGGGAAGAACATCATGGGGCAATTTACCTCCATCACTGATGCCTCCTCCAGATGGTGGATACCCACCTCTCCCTTTTGTAGATTGGGGATAATCCACCAATATCAGTTATTGCTACAACTCTCCTCGACTCTCTTGTTTCAGTCCTACTCTACTTATGGAGCAATTTGTACAAATTTGGTGTCTTCCACAGCCAGACAAATGTGCTTTTCCTTGTTTTCCTTCCAGGTACGATATACAAACCATGAAGTACCATAAACTTTCATCTTCTGTTAATGTTTAAGTATTTAGTTGCATATGTTATAGCTGAAGTTGTGATCTCATGATATGTCGAGTTTATGGTGCTCTAAACTTGTTGAGATAATCATATGATCGAATGACTTGCAGTAATATGATATGACGAGAGTTGATGAAGATATCAAGCAAACACCTGATTCTAAGACCATTTTGTTCACTAGCAAACTTTACTTTTCATTCATAAACCAGGCACGGGAGGCTTCAAATGTTATTGATCTCGACAAGTAG

mRNA sequence

GGTAGCAAAAGATTGCAGGAGAAATTGATTAGAAAGAGAGAAGCTTTAGGAAGGAATCGAAGAATCGAAGATGCCACTGGGAAAATATTACTGCGATTACTGCGAGAAGCAATTCCAAGACACTCCTTTCGCTCGTAAACGCCATCTTCAAAGCCTTTCCCATCAGAAGGCCAAAGCTCTGTGGTTCGACTCCTTCAGTTCAGCTTCTTCTTCCAATCAACAACAACCTTTCTCTGATTCCTTCCACCTCCGACCACGCATCTGTAATCCATTCATCACTACGATTGGGGATAATCCACCAATATCAGTTATTGCTACAACTCTCCTCGACTCTCTTGTTTCAGTCCTACTCTACTTATGGAGCAATTTGTACAAATTTGGTGTCTTCCACAGCCAGACAAATGTGCTTTTCCTTGTTTTCCTTCCAGTTGATGAAGATATCAAGCAAACACCTGATTCTAAGACCATTTTGTTCACTAGCAAACTTTACTTTTCATTCATAAACCAGGCACGGGAGGCTTCAAATGTTATTGATCTCGACAAGTAG

Coding sequence (CDS)

ATGCCACTGGGAAAATATTACTGCGATTACTGCGAGAAGCAATTCCAAGACACTCCTTTCGCTCGTAAACGCCATCTTCAAAGCCTTTCCCATCAGAAGGCCAAAGCTCTGTGGTTCGACTCCTTCAGTTCAGCTTCTTCTTCCAATCAACAACAACCTTTCTCTGATTCCTTCCACCTCCGACCACGCATCTGTAATCCATTCATCACTACGATTGGGGATAATCCACCAATATCAGTTATTGCTACAACTCTCCTCGACTCTCTTGTTTCAGTCCTACTCTACTTATGGAGCAATTTGTACAAATTTGGTGTCTTCCACAGCCAGACAAATGTGCTTTTCCTTGTTTTCCTTCCAGTTGATGAAGATATCAAGCAAACACCTGATTCTAAGACCATTTTGTTCACTAGCAAACTTTACTTTTCATTCATAAACCAGGCACGGGAGGCTTCAAATGTTATTGATCTCGACAAGTAG

Protein sequence

MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHLRPRICNPFITTIGDNPPISVIATTLLDSLVSVLLYLWSNLYKFGVFHSQTNVLFLVFLPVDEDIKQTPDSKTILFTSKLYFSFINQAREASNVIDLDK

Homology

[Close]

BLAST of Lsi06G000320 vs. Swiss-Prot
Match: C3H3_ORYSJ (Zinc finger CCCH domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=Os01g0252200 PE=2 SV=2)

HSP 1 Score: 76.6 bits (187), Expect = 2.6e-13
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 1


Query: 1  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDS 42
          MPLGKYYCDYCEKQFQDTP ARKRHL    H +A+ALW+D+
Sbjct: 1  MPLGKYYCDYCEKQFQDTPAARKRHLDGAQHHRARALWYDA 41

[Close]

BLAST of Lsi06G000320 vs. Swiss-Prot
Match: ZMAT5_BOVIN (Zinc finger matrin-type protein 5 OS=Bos taurus GN=ZMAT5 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 6.3e-07
Identity = 28/67 (41.79%), Postives = 38/67 (56.72%), Query Frame = 1


Query: 5  KYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHLRPRI 64
          +Y+CDYC++ FQD    RK+HL  L H KAK LW+D F  A++        D  + RP  
Sbjct: 4  RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKLWYDMFRDAAAI-----LLDEQNKRP-- 63

Query: 65 CNPFITT 72
          C  F+ T
Sbjct: 64 CRKFLLT 63

[Close]

BLAST of Lsi06G000320 vs. Swiss-Prot
Match: ZMAT5_DANRE (Zinc finger matrin-type protein 5 OS=Danio rerio GN=zmat5 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 6.3e-07
Identity = 24/67 (35.82%), Postives = 37/67 (55.22%), Query Frame = 1


Query: 5  KYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHLRPRI 64
          +YYCDYC++ FQD    RK+HL  + H +AK  WFD+F  A++    +   +       +
Sbjct: 4  RYYCDYCDRSFQDNLHNRKKHLNGVQHHRAKKAWFDNFRDAATLLNDERSKE-------V 63

Query: 65 CNPFITT 72
          C  F+ T
Sbjct: 64 CRKFVQT 63

[Close]

BLAST of Lsi06G000320 vs. Swiss-Prot
Match: ZMAT5_HUMAN (Zinc finger matrin-type protein 5 OS=Homo sapiens GN=ZMAT5 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.4e-06
Identity = 27/67 (40.30%), Postives = 38/67 (56.72%), Query Frame = 1


Query: 5  KYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHLRPRI 64
          +Y+CDYC++ FQD    RK+HL  L H KAK +W+D F  A++        D  + RP  
Sbjct: 4  RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAI-----LLDEQNKRP-- 63

Query: 65 CNPFITT 72
          C  F+ T
Sbjct: 64 CRKFLLT 63

[Close]

BLAST of Lsi06G000320 vs. Swiss-Prot
Match: ZMAT5_MOUSE (Zinc finger matrin-type protein 5 OS=Mus musculus GN=Zmat5 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.4e-06
Identity = 27/67 (40.30%), Postives = 38/67 (56.72%), Query Frame = 1


Query: 5  KYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHLRPRI 64
          +Y+CDYC++ FQD    RK+HL  L H KAK +W+D F  A++        D  + RP  
Sbjct: 4  RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAI-----LLDEQNKRP-- 63

Query: 65 CNPFITT 72
          C  F+ T
Sbjct: 64 CRKFLLT 63

[Close]

BLAST of Lsi06G000320 vs. TrEMBL
Match: A0A0A0M1B0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560650 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 5.7e-23
Identity = 54/71 (76.06%), Postives = 58/71 (81.69%), Query Frame = 1


Query: 1  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHL 60
          MPLGKYYCDYC+KQFQDTPFARKRHLQSLSHQKAKALWFDSF   +     Q F  SFH 
Sbjct: 1  MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFN-----QSFPHSFHF 60

Query: 61 RPRICNPFITT 72
          RPRICN F++T
Sbjct: 61 RPRICNRFLST 66

[Close]

BLAST of Lsi06G000320 vs. TrEMBL
Match: W9RHS5_9ROSA (Zinc finger CCCH domain-containing protein 3 OS=Morus notabilis GN=L484_001153 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 5.2e-16
Identity = 43/72 (59.72%), Postives = 52/72 (72.22%), Query Frame = 1


Query: 1  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHL 60
          MPLGKYYCDYC+KQFQDTPFARKRHLQ L H +AKALW+DSF      +  Q ++D F  
Sbjct: 1  MPLGKYYCDYCDKQFQDTPFARKRHLQGLQHLRAKALWYDSF-----KDPNQAYTDGF-- 60

Query: 61 RPRICNPFITTI 73
             +CN F+ T+
Sbjct: 61 GKGVCNRFVNTV 65

[Close]

BLAST of Lsi06G000320 vs. TrEMBL
Match: A0A022PSS0_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a015650mg PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 9.8e-15
Identity = 43/72 (59.72%), Postives = 52/72 (72.22%), Query Frame = 1


Query: 1  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSF-SSASSSNQQQPFSDSFH 60
          MPLGKY CDYC+KQFQDTP AR+RHLQ ++HQ+AKALW+DSF SS    NQ Q   D   
Sbjct: 1  MPLGKYVCDYCDKQFQDTPGARRRHLQGVAHQRAKALWYDSFRSSTQRLNQVQ---DPLS 60

Query: 61 LRPRICNPFITT 72
          +   +CN F+ T
Sbjct: 61 IGKGVCNRFVRT 69

[Close]

BLAST of Lsi06G000320 vs. TrEMBL
Match: M0U7G9_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.3e-14
Identity = 40/71 (56.34%), Postives = 49/71 (69.01%), Query Frame = 1


Query: 1  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHL 60
          MPLGKYYCDYC+KQFQDTP ARKRHLQ L H +A+ALW+DSF     +   QP+     L
Sbjct: 1  MPLGKYYCDYCDKQFQDTPAARKRHLQGLHHHRARALWYDSFKEPHGAPLFQPYGS---L 60

Query: 61 RPRICNPFITT 72
             +C+ F+ T
Sbjct: 61 AKGVCHHFVRT 68

[Close]

BLAST of Lsi06G000320 vs. TrEMBL
Match: S8DN91_9LAMI (Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_10316 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.9e-14
Identity = 40/71 (56.34%), Postives = 52/71 (73.24%), Query Frame = 1


Query: 1  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHL 60
          MPLGKYYCDYC+KQFQDTP AR+RHL+ ++HQ+AKALW+D+  ++  +NQ     D   L
Sbjct: 1  MPLGKYYCDYCDKQFQDTPSARRRHLEGVAHQRAKALWYDAARNSHWTNQ---VPDPRSL 60

Query: 61 RPRICNPFITT 72
             ICN F+ T
Sbjct: 61 GKGICNRFVRT 68

[Close]

BLAST of Lsi06G000320 vs. TAIR10
Match: AT5G26749.2 (AT5G26749.2 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 80.1 bits (196), Expect = 1.3e-15
Identity = 41/72 (56.94%), Postives = 51/72 (70.83%), Query Frame = 1


Query: 1  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHL 60
          MP GKYYCDYCEK+FQDT  ARKRHLQS  H +AKALW+    S+SSS+   P   +F  
Sbjct: 1  MPSGKYYCDYCEKEFQDTQVARKRHLQSKPHLRAKALWY----SSSSSDLVNPQVSNFAT 60

Query: 61 RPRICNPFITTI 73
          +  +CN FIT++
Sbjct: 61 K-GLCNRFITSV 67

[Close]

BLAST of Lsi06G000320 vs. NCBI nr
Match: gi|659099282|ref|XP_008450521.1| (PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis melo])

HSP 1 Score: 116.7 bits (291), Expect = 3.7e-23
Identity = 54/71 (76.06%), Postives = 59/71 (83.10%), Query Frame = 1


Query: 1  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHL 60
          MPLGKYYCDYC+KQFQDTPFARKRHLQSLSHQKAKALWFDSF  ++     Q F  SFH 
Sbjct: 1  MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSN-----QTFPHSFHF 60

Query: 61 RPRICNPFITT 72
          RPRICN F++T
Sbjct: 61 RPRICNRFLST 66

[Close]

BLAST of Lsi06G000320 vs. NCBI nr
Match: gi|449435572|ref|XP_004135569.1| (PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis sativus])

HSP 1 Score: 115.5 bits (288), Expect = 8.2e-23
Identity = 54/71 (76.06%), Postives = 58/71 (81.69%), Query Frame = 1


Query: 1  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHL 60
          MPLGKYYCDYC+KQFQDTPFARKRHLQSLSHQKAKALWFDSF   +     Q F  SFH 
Sbjct: 1  MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFN-----QSFPHSFHF 60

Query: 61 RPRICNPFITT 72
          RPRICN F++T
Sbjct: 61 RPRICNRFLST 66

[Close]

BLAST of Lsi06G000320 vs. NCBI nr
Match: gi|703106123|ref|XP_010098420.1| (Zinc finger CCCH domain-containing protein 3 [Morus notabilis])

HSP 1 Score: 92.4 bits (228), Expect = 7.4e-16
Identity = 43/72 (59.72%), Postives = 52/72 (72.22%), Query Frame = 1


Query: 1  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHL 60
          MPLGKYYCDYC+KQFQDTPFARKRHLQ L H +AKALW+DSF      +  Q ++D F  
Sbjct: 1  MPLGKYYCDYCDKQFQDTPFARKRHLQGLQHLRAKALWYDSF-----KDPNQAYTDGF-- 60

Query: 61 RPRICNPFITTI 73
             +CN F+ T+
Sbjct: 61 GKGVCNRFVNTV 65

[Close]

BLAST of Lsi06G000320 vs. NCBI nr
Match: gi|848926523|ref|XP_012859022.1| (PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X2 [Erythranthe guttata])

HSP 1 Score: 88.2 bits (217), Expect = 1.4e-14
Identity = 43/72 (59.72%), Postives = 52/72 (72.22%), Query Frame = 1


Query: 1  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSF-SSASSSNQQQPFSDSFH 60
          MPLGKY CDYC+KQFQDTP AR+RHLQ ++HQ+AKALW+DSF SS    NQ Q   D   
Sbjct: 1  MPLGKYVCDYCDKQFQDTPGARRRHLQGVAHQRAKALWYDSFRSSTQRLNQVQ---DPLS 60

Query: 61 LRPRICNPFITT 72
          +   +CN F+ T
Sbjct: 61 IGKGVCNRFVRT 69

[Close]

BLAST of Lsi06G000320 vs. NCBI nr
Match: gi|848926521|ref|XP_012859021.1| (PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X1 [Erythranthe guttata])

HSP 1 Score: 88.2 bits (217), Expect = 1.4e-14
Identity = 40/71 (56.34%), Postives = 51/71 (71.83%), Query Frame = 1


Query: 1  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHL 60
          MPLGKY CDYC+KQFQDTP AR+RHLQ ++HQ+AKALW+DSF S++     Q   D   +
Sbjct: 1  MPLGKYVCDYCDKQFQDTPGARRRHLQGVAHQRAKALWYDSFRSSTQPGLNQ-VQDPLSI 60

Query: 61 RPRICNPFITT 72
             +CN F+ T
Sbjct: 61 GKGVCNRFVRT 70

The following BLAST results are available for this feature:

BLAST of Lsi06G000320 vs. Swiss-Prot


Match Name	E-value	Identity	Description
C3H3_ORYSJ	2.6e-13	75.61	Zinc finger CCCH domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=...	[more]
ZMAT5_BOVIN	6.3e-07	41.79	Zinc finger matrin-type protein 5 OS=Bos taurus GN=ZMAT5 PE=2 SV=1	[more]
ZMAT5_DANRE	6.3e-07	35.82	Zinc finger matrin-type protein 5 OS=Danio rerio GN=zmat5 PE=2 SV=1	[more]
ZMAT5_HUMAN	1.4e-06	40.30	Zinc finger matrin-type protein 5 OS=Homo sapiens GN=ZMAT5 PE=1 SV=1	[more]
ZMAT5_MOUSE	1.4e-06	40.30	Zinc finger matrin-type protein 5 OS=Mus musculus GN=Zmat5 PE=2 SV=1	[more]

BLAST of Lsi06G000320 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M1B0_CUCSA	5.7e-23	76.06	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560650 PE=4 SV=1	[more]
W9RHS5_9ROSA	5.2e-16	59.72	Zinc finger CCCH domain-containing protein 3 OS=Morus notabilis GN=L484_001153 P...	[more]
A0A022PSS0_ERYGU	9.8e-15	59.72	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a015650mg PE=4 SV=1	[more]
M0U7G9_MUSAM	1.3e-14	56.34	Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1	[more]
S8DN91_9LAMI	4.9e-14	56.34	Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_10316 PE=4 SV=1	[more]

BLAST of Lsi06G000320 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G26749.2	1.3e-15	56.94	C2H2 and C2HC zinc fingers superfamily protein	[more]

BLAST of Lsi06G000320 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659099282\|ref\|XP_008450521.1\|	3.7e-23	76.06	PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis melo]	[more]
gi\|449435572\|ref\|XP_004135569.1\|	8.2e-23	76.06	PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis sativus]	[more]
gi\|703106123\|ref\|XP_010098420.1\|	7.4e-16	59.72	Zinc finger CCCH domain-containing protein 3 [Morus notabilis]	[more]
gi\|848926523\|ref\|XP_012859022.1\|	1.4e-14	59.72	PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X2 [Erythranthe ...	[more]
gi\|848926521\|ref\|XP_012859021.1\|	1.4e-14	56.34	PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X1 [Erythranthe ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR013085	U1-CZ_Znf_C2H2
IPR003604	Matrin/U1-like-C_Znf_C2H2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G000320.1	Lsi06G000320.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003604	Zinc finger, U1-type	SMART	SM00451	ZnF_U1_5	coord: 3..38 score: 1.
IPR013085	Zinc finger, U1-C type	PFAM	PF06220	zf-U1	coord: 5..36 score: 3.
None	No IPR available	PANTHER	PTHR16465	NUCLEASE-RELATED	coord: 2..45 score: 3.1
None	No IPR available	PANTHER	PTHR16465:SF0	ZINC FINGER MATRIN-TYPE PROTEIN 5	coord: 2..45 score: 3.1
None	No IPR available	unknown	SSF57667	beta-beta-alpha zinc fingers	coord: 4..46 score: 1.01

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi06G000320	Csa1G560650	Cucumber (Chinese Long) v2	culsiB075
Lsi06G000320	CSPI01G25540	Wild cucumber (PI 183967)	cpilsiB076
Lsi06G000320	Cucsa.050840	Cucumber (Gy14) v1	cgylsiB035
Lsi06G000320	CmoCh11G012780	Cucurbita moschata (Rifu)	cmolsiB122
Lsi06G000320	Cla005152	Watermelon (97103) v1	lsiwmB396
Lsi06G000320	MELO3C015248	Melon (DHL92) v3.5.1	lsimeB396
Lsi06G000320	ClCG03G017800	Watermelon (Charleston Gray)	lsiwcgB364
Lsi06G000320	Cla97C03G068210	Watermelon (97103) v2	lsiwmbB365
Lsi06G000320	CsaV3_1G037970	Cucumber (Chinese Long) v3	cuclsiB086

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G000320	Cucumber (Gy14) v1	cgylsiB033
Lsi06G000320	Cucurbita maxima (Rimu)	cmalsiB076
Lsi06G000320	Cucurbita maxima (Rimu)	cmalsiB133
Lsi06G000320	Cucurbita maxima (Rimu)	cmalsiB142
Lsi06G000320	Cucurbita moschata (Rifu)	cmolsiB062
Lsi06G000320	Cucurbita pepo (Zucchini)	cpelsiB302
Lsi06G000320	Cucurbita pepo (Zucchini)	cpelsiB560
Lsi06G000320	Wild cucumber (PI 183967)	cpilsiB059
Lsi06G000320	Cucumber (Chinese Long) v2	culsiB058
Lsi06G000320	Cucumber (Gy14) v2	cgyblsiB055
Lsi06G000320	Cucumber (Gy14) v2	cgyblsiB073
Lsi06G000320	Melon (DHL92) v3.6.1	lsimedB418
Lsi06G000320	Cucumber (Chinese Long) v3	cuclsiB068
Lsi06G000320	Wax gourd	lsiwgoB522