Lsi06G000320.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G000320.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Nucleic acid binding / zinc ion binding protein
Location	chr06 : 342445 .. 344174 (+)
Sequence length	547

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTAGCAAAAGATTGCAGGAGAAATTGATTAGAAAGAGAGAAGCTTTAGGAAGGAATCGAAGAATCGAAGATGCCACTGGGAAAATATTACTGCGATTACTGCGAGAAGCAATTCCAAGACACTCCTTTCGCTCGTAAACGCCATCTTCAAAGCCTTTCCCATCAGAAGGCCAAAGCTCTGTGGTTCGACTCCTTCAGTTCAGCTTCTTCTTCCAATCAACAACAACCTTTCTCTGATTCCTTCCACCTCCGACCACGCATCTGTAATCCATTCATCACTACGGTAAGTTCTTCTTCCTTTCCCTTCGCATCGCTTCGCTTCCATTTTCTTTTAACCTAATTTTTGCTTTCCTTCTCCTTCTCCTTCGCCTTCATTTCAAAGGGGTTTTGCCAATATGGTGATTCTTGTAAATATTTCCACCCCAACAACAACAACAATACTACTACGCACAACTCCACTTCCCACCCCATTCCAGGTACGCCGAAATTTATTTTCATTTTCCATCCATTTCCTGTCTATTTGATTCTATTTCAAATTCACAGGTTTCCCGGAAAATAATCAACCCCCAAATATTCCCCTGAATCCATTCCTGGACGGCAGCTCTTTCACAGGTAACTTGAACTTGAACTTGAACTGAATTCCTTACTGCTTATTTTGATTCGTGTTCCACACTTTTTTTGTTTATTTATTATTACCAACAGCAGTGTTTTTTCCCATTCATGGTAACAATCGAGTAATTCCCAGCTCCATTCCTCTTTCATTGACAGCACCCATCATTGTTTATGAACGAACCAACGAACCTATAAATCATTCTGAGTTCTACATATTGTTTGAATCATTTAGGTCCTGTTTACTAACCATTTTGCTTTTAATTTTTAAAAATTAAGCTTACTTCTTTTTCATTTCTTATAATGATTTGCATATTTCTTAAGTATGATGCTGGAATTCTTAGTCAAATTTCAAAACCAAAAACAAATTTTACAAGCTACTTTTTTTAATTTTCAAAATTTGACTTAGTTTTTTAAACCATTAGTGAAAAGTAGATAACAAAAAAATAAATTTAGAGGTGAAAGTAGTCTCTATAAGCTTAATTTTCAAAAACAAAAATCCAAATGGCTATCCAACGGAGTCTTAGTTTTCATGTGTCTGACAGCTTACATTTGATAATTATTCTGAGTGCTTCAGGTAGTTTAGCTAGCGATAGTATGGGAAGAACATCATGGGGCAATTTACCTCCATCACTGATGCCTCCTCCAGATGGTGGATACCCACCTCTCCCTTTTGTAGATTGGGGATAATCCACCAATATCAGTTATTGCTACAACTCTCCTCGACTCTCTTGTTTCAGTCCTACTCTACTTATGGAGCAATTTGTACAAATTTGGTGTCTTCCACAGCCAGACAAATGTGCTTTTCCTTGTTTTCCTTCCAGGTACGATATACAAACCATGAAGTACCATAAACTTTCATCTTCTGTTAATGTTTAAGTATTTAGTTGCATATGTTATAGCTGAAGTTGTGATCTCATGATATGTCGAGTTTATGGTGCTCTAAACTTGTTGAGATAATCATATGATCGAATGACTTGCAGTAATATGATATGACGAGAGTTGATGAAGATATCAAGCAAACACCTGATTCTAAGACCATTTTGTTCACTAGCAAACTTTACTTTTCATTCATAAACCAGGCACGGGAGGCTTCAAATGTTATTGATCTCGACAAGTAG

mRNA sequence

GGTAGCAAAAGATTGCAGGAGAAATTGATTAGAAAGAGAGAAGCTTTAGGAAGGAATCGAAGAATCGAAGATGCCACTGGGAAAATATTACTGCGATTACTGCGAGAAGCAATTCCAAGACACTCCTTTCGCTCGTAAACGCCATCTTCAAAGCCTTTCCCATCAGAAGGCCAAAGCTCTGTGGTTCGACTCCTTCAGTTCAGCTTCTTCTTCCAATCAACAACAACCTTTCTCTGATTCCTTCCACCTCCGACCACGCATCTGTAATCCATTCATCACTACGATTGGGGATAATCCACCAATATCAGTTATTGCTACAACTCTCCTCGACTCTCTTGTTTCAGTCCTACTCTACTTATGGAGCAATTTGTACAAATTTGGTGTCTTCCACAGCCAGACAAATGTGCTTTTCCTTGTTTTCCTTCCAGTTGATGAAGATATCAAGCAAACACCTGATTCTAAGACCATTTTGTTCACTAGCAAACTTTACTTTTCATTCATAAACCAGGCACGGGAGGCTTCAAATGTTATTGATCTCGACAAGTAG

Coding sequence (CDS)

ATGCCACTGGGAAAATATTACTGCGATTACTGCGAGAAGCAATTCCAAGACACTCCTTTCGCTCGTAAACGCCATCTTCAAAGCCTTTCCCATCAGAAGGCCAAAGCTCTGTGGTTCGACTCCTTCAGTTCAGCTTCTTCTTCCAATCAACAACAACCTTTCTCTGATTCCTTCCACCTCCGACCACGCATCTGTAATCCATTCATCACTACGATTGGGGATAATCCACCAATATCAGTTATTGCTACAACTCTCCTCGACTCTCTTGTTTCAGTCCTACTCTACTTATGGAGCAATTTGTACAAATTTGGTGTCTTCCACAGCCAGACAAATGTGCTTTTCCTTGTTTTCCTTCCAGTTGATGAAGATATCAAGCAAACACCTGATTCTAAGACCATTTTGTTCACTAGCAAACTTTACTTTTCATTCATAAACCAGGCACGGGAGGCTTCAAATGTTATTGATCTCGACAAGTAG

Protein sequence

MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHLRPRICNPFITTIGDNPPISVIATTLLDSLVSVLLYLWSNLYKFGVFHSQTNVLFLVFLPVDEDIKQTPDSKTILFTSKLYFSFINQAREASNVIDLDK

Homology

[Close]

BLAST of Lsi06G000320.1 vs. Swiss-Prot
Match: C3H3_ORYSJ (Zinc finger CCCH domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=Os01g0252200 PE=2 SV=2)

HSP 1 Score: 76.6 bits (187), Expect = 2.6e-13
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 1


Query: 1  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDS 42
          MPLGKYYCDYCEKQFQDTP ARKRHL    H +A+ALW+D+
Sbjct: 1  MPLGKYYCDYCEKQFQDTPAARKRHLDGAQHHRARALWYDA 41

[Close]

BLAST of Lsi06G000320.1 vs. Swiss-Prot
Match: ZMAT5_BOVIN (Zinc finger matrin-type protein 5 OS=Bos taurus GN=ZMAT5 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 6.3e-07
Identity = 28/67 (41.79%), Postives = 38/67 (56.72%), Query Frame = 1


Query: 5  KYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHLRPRI 64
          +Y+CDYC++ FQD    RK+HL  L H KAK LW+D F  A++        D  + RP  
Sbjct: 4  RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKLWYDMFRDAAAI-----LLDEQNKRP-- 63

Query: 65 CNPFITT 72
          C  F+ T
Sbjct: 64 CRKFLLT 63

[Close]

BLAST of Lsi06G000320.1 vs. Swiss-Prot
Match: ZMAT5_DANRE (Zinc finger matrin-type protein 5 OS=Danio rerio GN=zmat5 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 6.3e-07
Identity = 24/67 (35.82%), Postives = 37/67 (55.22%), Query Frame = 1


Query: 5  KYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHLRPRI 64
          +YYCDYC++ FQD    RK+HL  + H +AK  WFD+F  A++    +   +       +
Sbjct: 4  RYYCDYCDRSFQDNLHNRKKHLNGVQHHRAKKAWFDNFRDAATLLNDERSKE-------V 63

Query: 65 CNPFITT 72
          C  F+ T
Sbjct: 64 CRKFVQT 63

[Close]

BLAST of Lsi06G000320.1 vs. Swiss-Prot
Match: ZMAT5_HUMAN (Zinc finger matrin-type protein 5 OS=Homo sapiens GN=ZMAT5 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.4e-06
Identity = 27/67 (40.30%), Postives = 38/67 (56.72%), Query Frame = 1


Query: 5  KYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHLRPRI 64
          +Y+CDYC++ FQD    RK+HL  L H KAK +W+D F  A++        D  + RP  
Sbjct: 4  RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAI-----LLDEQNKRP-- 63

Query: 65 CNPFITT 72
          C  F+ T
Sbjct: 64 CRKFLLT 63

[Close]

BLAST of Lsi06G000320.1 vs. Swiss-Prot
Match: ZMAT5_MOUSE (Zinc finger matrin-type protein 5 OS=Mus musculus GN=Zmat5 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.4e-06
Identity = 27/67 (40.30%), Postives = 38/67 (56.72%), Query Frame = 1


Query: 5  KYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHLRPRI 64
          +Y+CDYC++ FQD    RK+HL  L H KAK +W+D F  A++        D  + RP  
Sbjct: 4  RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAI-----LLDEQNKRP-- 63

Query: 65 CNPFITT 72
          C  F+ T
Sbjct: 64 CRKFLLT 63

[Close]

BLAST of Lsi06G000320.1 vs. TrEMBL
Match: A0A0A0M1B0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560650 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 5.7e-23
Identity = 54/71 (76.06%), Postives = 58/71 (81.69%), Query Frame = 1


Query: 1  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHL 60
          MPLGKYYCDYC+KQFQDTPFARKRHLQSLSHQKAKALWFDSF   +     Q F  SFH 
Sbjct: 1  MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFN-----QSFPHSFHF 60

Query: 61 RPRICNPFITT 72
          RPRICN F++T
Sbjct: 61 RPRICNRFLST 66

[Close]

BLAST of Lsi06G000320.1 vs. TrEMBL
Match: W9RHS5_9ROSA (Zinc finger CCCH domain-containing protein 3 OS=Morus notabilis GN=L484_001153 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 5.2e-16
Identity = 43/72 (59.72%), Postives = 52/72 (72.22%), Query Frame = 1


Query: 1  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHL 60
          MPLGKYYCDYC+KQFQDTPFARKRHLQ L H +AKALW+DSF      +  Q ++D F  
Sbjct: 1  MPLGKYYCDYCDKQFQDTPFARKRHLQGLQHLRAKALWYDSF-----KDPNQAYTDGF-- 60

Query: 61 RPRICNPFITTI 73
             +CN F+ T+
Sbjct: 61 GKGVCNRFVNTV 65

[Close]

BLAST of Lsi06G000320.1 vs. TrEMBL
Match: A0A022PSS0_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a015650mg PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 9.8e-15
Identity = 43/72 (59.72%), Postives = 52/72 (72.22%), Query Frame = 1


Query: 1  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSF-SSASSSNQQQPFSDSFH 60
          MPLGKY CDYC+KQFQDTP AR+RHLQ ++HQ+AKALW+DSF SS    NQ Q   D   
Sbjct: 1  MPLGKYVCDYCDKQFQDTPGARRRHLQGVAHQRAKALWYDSFRSSTQRLNQVQ---DPLS 60

Query: 61 LRPRICNPFITT 72
          +   +CN F+ T
Sbjct: 61 IGKGVCNRFVRT 69

[Close]

BLAST of Lsi06G000320.1 vs. TrEMBL
Match: M0U7G9_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.3e-14
Identity = 40/71 (56.34%), Postives = 49/71 (69.01%), Query Frame = 1


Query: 1  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHL 60
          MPLGKYYCDYC+KQFQDTP ARKRHLQ L H +A+ALW+DSF     +   QP+     L
Sbjct: 1  MPLGKYYCDYCDKQFQDTPAARKRHLQGLHHHRARALWYDSFKEPHGAPLFQPYGS---L 60

Query: 61 RPRICNPFITT 72
             +C+ F+ T
Sbjct: 61 AKGVCHHFVRT 68

[Close]

BLAST of Lsi06G000320.1 vs. TrEMBL
Match: S8DN91_9LAMI (Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_10316 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.9e-14
Identity = 40/71 (56.34%), Postives = 52/71 (73.24%), Query Frame = 1


Query: 1  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHL 60
          MPLGKYYCDYC+KQFQDTP AR+RHL+ ++HQ+AKALW+D+  ++  +NQ     D   L
Sbjct: 1  MPLGKYYCDYCDKQFQDTPSARRRHLEGVAHQRAKALWYDAARNSHWTNQ---VPDPRSL 60

Query: 61 RPRICNPFITT 72
             ICN F+ T
Sbjct: 61 GKGICNRFVRT 68

[Close]

BLAST of Lsi06G000320.1 vs. TAIR10
Match: AT5G26749.2 (AT5G26749.2 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 80.1 bits (196), Expect = 1.3e-15
Identity = 41/72 (56.94%), Postives = 51/72 (70.83%), Query Frame = 1


Query: 1  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHL 60
          MP GKYYCDYCEK+FQDT  ARKRHLQS  H +AKALW+    S+SSS+   P   +F  
Sbjct: 1  MPSGKYYCDYCEKEFQDTQVARKRHLQSKPHLRAKALWY----SSSSSDLVNPQVSNFAT 60

Query: 61 RPRICNPFITTI 73
          +  +CN FIT++
Sbjct: 61 K-GLCNRFITSV 67

[Close]

BLAST of Lsi06G000320.1 vs. NCBI nr
Match: gi|659099282|ref|XP_008450521.1| (PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis melo])

HSP 1 Score: 116.7 bits (291), Expect = 3.7e-23
Identity = 54/71 (76.06%), Postives = 59/71 (83.10%), Query Frame = 1


Query: 1  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHL 60
          MPLGKYYCDYC+KQFQDTPFARKRHLQSLSHQKAKALWFDSF  ++     Q F  SFH 
Sbjct: 1  MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSN-----QTFPHSFHF 60

Query: 61 RPRICNPFITT 72
          RPRICN F++T
Sbjct: 61 RPRICNRFLST 66

[Close]

BLAST of Lsi06G000320.1 vs. NCBI nr
Match: gi|449435572|ref|XP_004135569.1| (PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis sativus])

HSP 1 Score: 115.5 bits (288), Expect = 8.2e-23
Identity = 54/71 (76.06%), Postives = 58/71 (81.69%), Query Frame = 1


Query: 1  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHL 60
          MPLGKYYCDYC+KQFQDTPFARKRHLQSLSHQKAKALWFDSF   +     Q F  SFH 
Sbjct: 1  MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFN-----QSFPHSFHF 60

Query: 61 RPRICNPFITT 72
          RPRICN F++T
Sbjct: 61 RPRICNRFLST 66

[Close]

BLAST of Lsi06G000320.1 vs. NCBI nr
Match: gi|703106123|ref|XP_010098420.1| (Zinc finger CCCH domain-containing protein 3 [Morus notabilis])

HSP 1 Score: 92.4 bits (228), Expect = 7.4e-16
Identity = 43/72 (59.72%), Postives = 52/72 (72.22%), Query Frame = 1


Query: 1  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHL 60
          MPLGKYYCDYC+KQFQDTPFARKRHLQ L H +AKALW+DSF      +  Q ++D F  
Sbjct: 1  MPLGKYYCDYCDKQFQDTPFARKRHLQGLQHLRAKALWYDSF-----KDPNQAYTDGF-- 60

Query: 61 RPRICNPFITTI 73
             +CN F+ T+
Sbjct: 61 GKGVCNRFVNTV 65

[Close]

BLAST of Lsi06G000320.1 vs. NCBI nr
Match: gi|848926523|ref|XP_012859022.1| (PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X2 [Erythranthe guttata])

HSP 1 Score: 88.2 bits (217), Expect = 1.4e-14
Identity = 43/72 (59.72%), Postives = 52/72 (72.22%), Query Frame = 1


Query: 1  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSF-SSASSSNQQQPFSDSFH 60
          MPLGKY CDYC+KQFQDTP AR+RHLQ ++HQ+AKALW+DSF SS    NQ Q   D   
Sbjct: 1  MPLGKYVCDYCDKQFQDTPGARRRHLQGVAHQRAKALWYDSFRSSTQRLNQVQ---DPLS 60

Query: 61 LRPRICNPFITT 72
          +   +CN F+ T
Sbjct: 61 IGKGVCNRFVRT 69

[Close]

BLAST of Lsi06G000320.1 vs. NCBI nr
Match: gi|848926521|ref|XP_012859021.1| (PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X1 [Erythranthe guttata])

HSP 1 Score: 88.2 bits (217), Expect = 1.4e-14
Identity = 40/71 (56.34%), Postives = 51/71 (71.83%), Query Frame = 1


Query: 1  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHL 60
          MPLGKY CDYC+KQFQDTP AR+RHLQ ++HQ+AKALW+DSF S++     Q   D   +
Sbjct: 1  MPLGKYVCDYCDKQFQDTPGARRRHLQGVAHQRAKALWYDSFRSSTQPGLNQ-VQDPLSI 60

Query: 61 RPRICNPFITT 72
             +CN F+ T
Sbjct: 61 GKGVCNRFVRT 70

The following BLAST results are available for this feature:

BLAST of Lsi06G000320.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
C3H3_ORYSJ	2.6e-13	75.61	Zinc finger CCCH domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=...	[more]
ZMAT5_BOVIN	6.3e-07	41.79	Zinc finger matrin-type protein 5 OS=Bos taurus GN=ZMAT5 PE=2 SV=1	[more]
ZMAT5_DANRE	6.3e-07	35.82	Zinc finger matrin-type protein 5 OS=Danio rerio GN=zmat5 PE=2 SV=1	[more]
ZMAT5_HUMAN	1.4e-06	40.30	Zinc finger matrin-type protein 5 OS=Homo sapiens GN=ZMAT5 PE=1 SV=1	[more]
ZMAT5_MOUSE	1.4e-06	40.30	Zinc finger matrin-type protein 5 OS=Mus musculus GN=Zmat5 PE=2 SV=1	[more]

BLAST of Lsi06G000320.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M1B0_CUCSA	5.7e-23	76.06	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560650 PE=4 SV=1	[more]
W9RHS5_9ROSA	5.2e-16	59.72	Zinc finger CCCH domain-containing protein 3 OS=Morus notabilis GN=L484_001153 P...	[more]
A0A022PSS0_ERYGU	9.8e-15	59.72	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a015650mg PE=4 SV=1	[more]
M0U7G9_MUSAM	1.3e-14	56.34	Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1	[more]
S8DN91_9LAMI	4.9e-14	56.34	Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_10316 PE=4 SV=1	[more]

BLAST of Lsi06G000320.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G26749.2	1.3e-15	56.94	C2H2 and C2HC zinc fingers superfamily protein	[more]

BLAST of Lsi06G000320.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659099282\|ref\|XP_008450521.1\|	3.7e-23	76.06	PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis melo]	[more]
gi\|449435572\|ref\|XP_004135569.1\|	8.2e-23	76.06	PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis sativus]	[more]
gi\|703106123\|ref\|XP_010098420.1\|	7.4e-16	59.72	Zinc finger CCCH domain-containing protein 3 [Morus notabilis]	[more]
gi\|848926523\|ref\|XP_012859022.1\|	1.4e-14	59.72	PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X2 [Erythranthe ...	[more]
gi\|848926521\|ref\|XP_012859021.1\|	1.4e-14	56.34	PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X1 [Erythranthe ...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR013085	U1-CZ_Znf_C2H2
IPR003604	Matrin/U1-like-C_Znf_C2H2

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi06G000320	Lsi06G000320	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi06G000320.1.five_prime_UTR.1	Lsi06G000320.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi06G000320.1.CDS.1	Lsi06G000320.1.CDS.1	CDS
Lsi06G000320.1.CDS.2	Lsi06G000320.1.CDS.2	CDS
Lsi06G000320.1.CDS.3	Lsi06G000320.1.CDS.3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi06G000320.1	Lsi06G000320.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003604	Zinc finger, U1-type	SMART	SM00451	ZnF_U1_5	coord: 3..38 score: 1.
IPR013085	Zinc finger, U1-C type	PFAM	PF06220	zf-U1	coord: 5..36 score: 3.
None	No IPR available	PANTHER	PTHR16465	NUCLEASE-RELATED	coord: 2..45 score: 3.1
None	No IPR available	PANTHER	PTHR16465:SF0	ZINC FINGER MATRIN-TYPE PROTEIN 5	coord: 2..45 score: 3.1
None	No IPR available	unknown	SSF57667	beta-beta-alpha zinc fingers	coord: 4..46 score: 1.01