Cp4.1LG00g02240 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG00g02240
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionZinc finger CCCH domain-containing protein 3
LocationCp4.1LG00 : 6184834 .. 6188577 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCTTCTTTCTATTTAACCTAACTCTTGCTTTTTCCGATTTCATTCTTTGCTCTCCACCATTCCAAAGGGCTTTTGCCACTACGGTGATTCTTGCAACTATTTTCACTCCAACAACAATCCGCAGTACTCCAGTTCGCACCCGATTGCAGGTTAACCCTAAACCCTACCTTACTCTGTCTCAACAACCCAATGCGAAATTCGAAACCTAATGCTATTTATTTCGATCCATTTCCGCTCTGATTCAATATAAAAATCACAGGTTTTCCGGAGAATAATCAAGCCCCAAATGTTCCGGTGAACCAATTCATGGAGGGCAGTTCGTTGACAGGTAACTTGGAACTGAAATCATCACATGGTTTTGTGTTCCATATTTTATTTGTTCATTCATAAGATGGTGATGTTGGTTAAATTTTGAGTGGATCATTACATTACATACATCATTTACTTGAACTCTCTTACTGCTTGTTATGCATCTGCAAATCATTCTTTGTTTGAACAGAATCCATCATTGTTTTTTGTATCTGTAAAGCATTCTGCGTTCTACTACACATTTGAATCTTTTATCCCAGGATTTGATGGCCCTCTAATCTTTCATATTTTTCAACTTTCTATGCTTGCGTTTGATCTCAGGTAGTTTAGATAGATTGAGAACATCATGGGGAAATTTACCTCCATCATTGATGCCTCCTCCAGAGGGTGGTTACCCACCTCTCCCTTTTGTAGATTGGGGATAATCCACGAATCAGTTACTGGTACAAGTCTACTCGGCTTCTCTTGTTTTTAACCTCCTACTCTATATATAAAGCACCAATTTCTTCAAATTTGGTGTCCTTCACATCTAGACTATGAGCCTTCCTCTGCTTTCCTTTCAAGTACCATATTCTTCAACACATGACTGTCTTTAACTTGTCCTCTGTTAATGTTTTAGCATTTAGTTGCACCACTTATGTGGAGATTATGGTGCTCTAAACTCGTTCGAGATCGGCACTGACATAATGTAATATGAGGAGAGTTAATGAAGCAAATAAAAGAACACCTAATTCCAAGATCTTTTCACTAGCAAACTCAACATTTCATTCATAAAACAGGCATGGTCAGTTCCAAATGTTGTTGATCTCGACAGAAATGAGTACAAAGAACATATGAATGCCTTCTCGGGCCTACATATATTAGCCCCCCTTGTATAGCATGTGATTATTTATTTCATTCAAGCATCTTGACAAGCAGGAATCACCCCAATACTATACATTGGTTGCCTAATAACTTGATGCCAGAACCTGTAACAAGGAAGCAATAAATTGCATCTGGGTGTCTTCATCTATGGTTTCGAATAGAGGGACATGAACAAATAGTGATTTGATGCCATTCTCTTGGGCGCAGCGGAGGGAATGATAGTACACATAATTGCACACAAAGCGACCAGCATCGTTTGAAGTCATCACTTCATATCCCTTCTTCGCCAATGCCTTGGTTATTTCCTCCACTGGAAGAGAAGTCTGCAGGGCATAGATGGGTAAAGGAATCAGGAAAAAAAAAAAAGAAAAGAAAAACTTTAATGATTTGCATCAAGAGTTAAGAACCAGCAAAAATGTGCTATAGTTTCTATAAGTTTATGGTTATGCCTTTGCAATCTTCCTCGATTAAACTCAACTTGTTATAATGTTTCGATGTTGTGACACAATGAGATGTCATTATGTAAACAAGTACATTATTTAAAATTACATTTCAATATTTTCACCCATCTATGCTCTTACTTAATGATATTTGTAATATATGATAAGGTGAGGACGTACTGAAATAAACGAACACTGTGCAATGTGTTCAAGAGATGTGCATAAATGTATTTTAACAGATGCTAATATTTTAAAAGAAATGGTAATCTATAGTAAAAAAAAAAAAAAAAAAAAAAAAAANAGTGAAATTTCATGATACCTCTCGTACTCTTGAAATTTGACCGTCCTCAGGTACGATAGGAACTCTCTGCAGCAGATGAAAGTAATAACAGAATATCAAACTTGCAGTTAAATAGATGGTCAAGCCAACTAAACTAAACTCCTCCACCCAGCCTATGAGATAGATAGATAGATAGATAGATACACGTACTTTAGGTTTCCATCCCAACTCATCAGGACAACAGAACGTGGCTTCGTTATAGGCTTGATGTTCAATAGCAAACCTAGAGGCACCACTATTAACTCCCAAGTGAAGCTGAAGAAAGAATAGTGATATGATAACTTAGATACAGTATTAACATAATGCAATGCACAAACTTGTAAAAAGCCATTGTAATGCGAAGGAAATGGCAAATGAAGGCAGATTAATGCATAGATTCAGAAACTATGATGCATTTATCTTTATTGTATAAGATAATGTCAATTCAATGCTTATGATCTTATACAAACCCAACCTCCCTTTCCTTTTCTTCTAATTTCTTCCTCCAACACCAAATGATTGTCCTCCTTGGGCTTTTCTTTTTGGGTTTCCCCTCAAGGTTTTTAAAACGCGTCTGCTTGGGAGATGTTTTTACACCCTTATAAAGGGTGTTTCGTTCTCCTCCCCAACCAAAAGAACTAATGACGAGCAGATAGTAAGCACTAAAGAGAGAAAGGTTAGAGGAAGGGACAGGAATAACTGACCCAGATGATTCTTCTGGAATTATTAGTAGGTTCGGAACAACCCTTCTCCTCTACTGCAGATTGCAACATGTTAAGTAGTGAATCAAGAGCTCCATCCCCAGCAGTCTCAAGAATGCTGCAACTCCCAAGAGTTACACCTTCTGCCAAACCATTCTTCTCCATATACTTCTTCAGGTTGTTCACTATCGTCTCTGTTGGATTCGCAGAAACTCCATGGAACTTCTTGAATCCTGTTACATGAATCGTCACCGATGGAGGCCCTTCCGACCCCATTTAACGAAGATCTATTGCTTGGTAACACCACAACTACAGAGAGGATTCCAAAGGGAAAATTGCCCCCAACAGTCTGCAACATAAAAACCTAAGTGCTTAACTCTCAGCAGAAACAATCTTCTTCTTCTTCTCTTTGAATCCGATTGGTAGCTCAAAGTTAATTATAAATTTTACAACACAAAATTAGGGATCCAAAAAAGAGTATGTATCCAGTCTTGAGTTCACTAGTTGTACCCACAGAATCAAAGAAAAATGAAATTTACAACACTAATTCCCATCGAAATACCTAGGGAGTCGAACAAATCGCAGAACAAAAAGCCACGCAGTTCTTAGAACAACATGACAATAGAATAAAAGTAATGATCCATGTAAAGTCGAAGATAAAAACCAAACCATCCAGCAGATTCATCACCTCTGAAGCTAAAAACAAGGAAAAACACTCTTAAGGCAAAGAATTAACTCCCGATCGAGATGGAAAGTTAAATTGTCAGTGAATCAGACCCCTTCAGAATGATCAGAAACAAAAATCATTAAAGAACATACCAAAATAGGCAGAGAAATTGAAATGAAAGAAAGTGGATACATAAGAAAAAAAAACACAGAAGAGGGGGGTGGGAAAACCCTCAGAAGGAAAGGGGAATACGGCCATGATTGATTGATTACCTGTGAAGATTGAAGAAGAAGAATACAAAAACGCAAGAACCAGTCTTACGAACTGTGTACGCAGTAAAAGACGATCAGAGATTATCAGAGAGGAAAAAACAAAGAATGAAATTGCTTAGTAGAGACGCTGAAGATGGTGGTTGTTGGAAAGTTCGCATCAAAACGCCA

mRNA sequence

ATGTTCTTCTTTCTATTTAACCTAACTCTTGCTTTTTCCGATTTCATTCTTTGCTCTCCACCATTCCAAAGGGCTTTTGCCACTACGGTGATTCTTGCAACTATTTTCACTCCAACAACAATCCGCAGTTTTCCGGAGAATAATCAAGCCCCAAATGTTCCGGTGAACCAATTCATGGAGGGCAGTTCGTTGACAGGTAGTTTAGATAGATTGAGAACATCATGGGGAAATTTACCTCCATCATTGATGCCTCCTCCAGAGGGTGGTTACCCACCTCTCCCTTTTGTAGATTGGGGATAATCCACGAATCAGTTACTGGTACAAGTCTACTCGGCTTCTCTTGTTTTTAACCTCCTACTCTATATATAAAGCACCAATTTCTTCAAATTTGGTGTCCTTCACATCTAGACTATGAGCCTTCCTCTGCTTTCCTTTCAAGTACCATATTCTTCAACACATGACTGTCTTTAACTTGTCCTCTGTTAATGTTTTAGCATTTAGTTGCACCACTTATGTGGAGATTATGGTGCTCTAAACTCGTTCGAGATCGGCACTGACATAATGTAATATGAGGAGAGTTAATGAAGCAAATAAAAGAACACCTAATTCCAAGATCTTTTCACTAGCAAACTCAACATTTCATTCATAAAACAGGCATGGTCAGTTCCAAATGTTGTTGATCTCGACAGAAATGAGTACAAAGAACATATGAATGCCTTCTCGGGCCTACATATATTAGCCCCCCTTGTATAGCATGTGATTATTTATTTCATTCAAGCATCTTGACAAGCAGGAATCACCCCAATACTATACATTGGTTGCCTAATAACTTGATGCCAGAACCTGTAACAAGGAAGCAATAAATTGCATCTGGGTGTCTTCATCTATGGTTTCGAATAGAGGGACATGAACAAATAGTGATTTGATGCCATTCTCTTGGGCGCAGCGGAGGGAATGATAGTACACATAATTGCACACAAAGCGACCAGCATCGTTTGAAGTCATCACTTCATATCCCTTCTTCGCCAATGCCTTGGTTATTTCCTCCACTGGAAGAGAAGTCTGCAGGGCATAGATGGGTAAAGGAATCAGGAAAAAAAAAAAAGAAAAGAAAAACTTTAATGATTTGCATCAAGAGTTAAGAACCAGCAAAAATGTGCTATAGTTTCTATAAGTTTATGGTTATGCCTTTGCAATCTTCCTCGATTAAACTCAACTTGTTATAATGTTTCGATGTTGTGACACAATGAGATGTCATTATGTAAACAAGTACATTATTTAAAATTACATTTCAATATTTTCACCCATCTATGCTCTTACTTAATGATATTTGTAATATATGATAAGGTGAGGACGTACTGAAATAAACGAACACTGTGCAATGTGTTCAAGAGATGTGCATAAATGTATTTTAACAGATGCTAATATTTTAAAAGAAATGGTAATCTATAGTAAAAAAAAAAAAAAAAAAAAAAAAAANAGTGAAATTTCATGATACCTCTCGTACTCTTGAAATTTGACCGTCCTCAGGTACGATAGGAACTCTCTGCAGCAGATGAAAGTAATAACAGAATATCAAACTTGCAGTTAAATAGATGGTCAAGCCAACTAAACTAAACTCCTCCACCCAGCCTATGAGATAGATAGATAGATAGATAGATACACGTACTTTAGGTTTCCATCCCAACTCATCAGGACAACAGAACGTGGCTTCGTTATAGGCTTGATGTTCAATAGCAAACCTAGAGGCACCACTATTAACTCCCAAGTGAAGCTGAAGAAAGAATAGTGATATGATAACTTAGATACAGTATTAACATAATGCAATGCACAAACTTGTAAAAAGCCATTGTAATGCGAAGGAAATGGCAAATGAAGGCAGATTAATGCATAGATTCAGAAACTATGATGCATTTATCTTTATTGTATAAGATAATGTCAATTCAATGCTTATGATCTTATACAAACCCAACCTCCCTTTCCTTTTCTTCTAATTTCTTCCTCCAACACCAAATGATTGTCCTCCTTGGGCTTTTCTTTTTGGGTTTCCCCTCAAGGTTTTTAAAACGCGTCTGCTTGGGAGATGTTTTTACACCCTTATAAAGGGTGTTTCGTTCTCCTCCCCAACCAAAAGAACTAATGACGAGCAGATAGTAAGCACTAAAGAGAGAAAGGTTAGAGGAAGGGACAGGAATAACTGACCCAGATGATTCTTCTGGAATTATTAGTAGGTTCGGAACAACCCTTCTCCTCTACTGCAGATTGCAACATGTTAAGTAGTGAATCAAGAGCTCCATCCCCAGCAGTCTCAAGAATGCTGCAACTCCCAAGAGTTACACCTTCTGCCAAACCATTCTTCTCCATATACTTCTTCAGGTTGTTCACTATCGTCTCTGTTGGATTCGCAGAAACTCCATGGAACTTCTTGAATCCTGTTACATGAATCGTCACCGATGGAGGCCCTTCCGACCCCATTTAACGAAGATCTATTGCTTGGTAACACCACAACTACAGAGAGGATTCCAAAGGGAAAATTGCCCCCAACAGTCTGCAACATAAAAACCTAAGTGCTTAACTCTCAGCAGAAACAATCTTCTTCTTCTTCTCTTTGAATCCGATTGGTAGCTCAAAGTTAATTATAAATTTTACAACACAAAATTAGGGATCCAAAAAAGAGTATGTATCCAGTCTTGAGTTCACTAGTTGTACCCACAGAATCAAAGAAAAATGAAATTTACAACACTAATTCCCATCGAAATACCTAGGGAGTCGAACAAATCGCAGAACAAAAAGCCACGCAGTTCTTAGAACAACATGACAATAGAATAAAAGTAATGATCCATGTAAAGTCGAAGATAAAAACCAAACCATCCAGCAGATTCATCACCTCTGAAGCTAAAAACAAGGAAAAACACTCTTAAGGCAAAGAATTAACTCCCGATCGAGATGGAAAGTTAAATTGTCAGTGAATCAGACCCCTTCAGAATGATCAGAAACAAAAATCATTAAAGAACATACCAAAATAGGCAGAGAAATTGAAATGAAAGAAAGTGGATACATAAGAAAAAAAAACACAGAAGAGGGGGGTGGGAAAACCCTCAGAAGGAAAGGGGAATACGGCCATGATTGATTGATTACCTGTGAAGATTGAAGAAGAAGAATACAAAAACGCAAGAACCAGTCTTACGAACTGTGTACGCAGTAAAAGACGATCAGAGATTATCAGAGAGGAAAAAACAAAGAATGAAATTGCTTAGTAGAGACGCTGAAGATGGTGGTTGTTGGAAAGTTCGCATCAAAACGCCA

Coding sequence (CDS)

ATGTTCTTCTTTCTATTTAACCTAACTCTTGCTTTTTCCGATTTCATTCTTTGCTCTCCACCATTCCAAAGGGCTTTTGCCACTACGGTGATTCTTGCAACTATTTTCACTCCAACAACAATCCGCAGTTTTCCGGAGAATAATCAAGCCCCAAATGTTCCGGTGAACCAATTCATGGAGGGCAGTTCGTTGACAGGTAGTTTAGATAGATTGAGAACATCATGGGGAAATTTACCTCCATCATTGATGCCTCCTCCAGAGGGTGGTTACCCACCTCTCCCTTTTGTAGATTGGGGATAA

Protein sequence

MFFFLFNLTLAFSDFILCSPPFQRAFATTVILATIFTPTTIRSFPENNQAPNVPVNQFMEGSSLTGSLDRLRTSWGNLPPSLMPPPEGGYPPLPFVDWG
Homology
[Close]
BLAST of Cp4.1LG00g02240 vs. Swiss-Prot
Match: C3H3_ORYSJ (Zinc finger CCCH domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=Os01g0252200 PE=2 SV=2)

HSP 1 Score: 72.8 bits (177), Expect = 2.4e-12
Identity = 32/49 (65.31%), Postives = 36/49 (73.47%), Query Frame = 1 

Query: 51  PNVPVNQFMEGSSLTGSLDRLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 100
           PN    Q  +GSS +G++    TSWGNLPPSL PPPEGGYPP PFVDWG
Sbjct: 119 PNFVGYQAADGSSFSGNILGGHTSWGNLPPSLRPPPEGGYPPFPFVDWG 167

[Close]
BLAST of Cp4.1LG00g02240 vs. TrEMBL
Match: A0A0A0M1B0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560650 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 7.0e-19
Identity = 48/59 (81.36%), Postives = 52/59 (88.14%), Query Frame = 1 

Query: 44  FPENNQAPNVPVNQFMEG-SSLTGSL--DRLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 100
           FPEN Q PNVPVN+F++G SS TGSL  DRL TSWGNLPPSLMPPP+GGYPPLPFVDWG
Sbjct: 98  FPENYQPPNVPVNRFVDGNSSSTGSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 156

[Close]
BLAST of Cp4.1LG00g02240 vs. TrEMBL
Match: B9I6N1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s00620g PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.7e-12
Identity = 40/70 (57.14%), Postives = 46/70 (65.71%), Query Frame = 1 

Query: 32  LATIFTPTTIRSFPENNQAPNVPVNQFMEGSSLTGSLDR--LRTSWGNLPPSLMPPPEGG 91
           L T F  +   +F +N Q+P +P NQ   GSS  G   R  +  SWGNLPPSL PPPEGG
Sbjct: 81  LHTNFATSQGTAFKDNVQSPTMPGNQLAGGSSFPGVAVRESMGMSWGNLPPSLKPPPEGG 140

Query: 92  YPPLPFVDWG 100
           YPPLPFVDWG
Sbjct: 141 YPPLPFVDWG 150

[Close]
BLAST of Cp4.1LG00g02240 vs. TrEMBL
Match: D7UA82_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g00610 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.8e-12
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 1 

Query: 41  IRSFPENNQAPNVPVNQFMEGSSLTGSL--DRLRTSWGNLPPSLMPPPEGGYPPLPFVDW 100
           +  FP+N Q+ + P NQ + G  L G++  D +  SWGNLPPSL PPPEGGYPPLPF+DW
Sbjct: 92  VTGFPDNIQSLSNPGNQLVGGGPLPGNVVKDSMGNSWGNLPPSLKPPPEGGYPPLPFLDW 151

[Close]
BLAST of Cp4.1LG00g02240 vs. TrEMBL
Match: M5WL08_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016420mg PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 6.3e-12
Identity = 36/56 (64.29%), Postives = 41/56 (73.21%), Query Frame = 1 

Query: 46  ENNQAPNVPVNQFMEGSSLTGSL--DRLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 100
           +NNQ+     NQ + GSSL   +  D +  SWGNLPPSLMPPPEGGYPPLPFVDWG
Sbjct: 95  DNNQSSTFQENQLVGGSSLPDVVVRDSMGMSWGNLPPSLMPPPEGGYPPLPFVDWG 150

[Close]
BLAST of Cp4.1LG00g02240 vs. TrEMBL
Match: A0A067JTM5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23183 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 7.0e-11
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 1 

Query: 46  ENNQAPNVPVNQFMEGSSLTGSL--DRLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 100
           +N Q+P +P +Q + GSSL G +  D +   WGNLPPSL PPPEGGY PLPFVDWG
Sbjct: 99  DNVQSPFIPGSQLVGGSSLPGEMLRDSMGMPWGNLPPSLKPPPEGGYLPLPFVDWG 154

[Close]
BLAST of Cp4.1LG00g02240 vs. TAIR10
Match: AT5G26749.2 (AT5G26749.2 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 54.7 bits (130), Expect = 3.8e-08
Identity = 25/45 (55.56%), Postives = 30/45 (66.67%), Query Frame = 1 

Query: 57  QFMEGSSLTGSL--DRLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 100
           Q ++GS+L       R  T W +LPPSL PPPE GYP LPF+DWG
Sbjct: 122 QHIQGSTLNRDFVSGRPGTGWFDLPPSLKPPPEQGYPQLPFIDWG 166

[Close]
BLAST of Cp4.1LG00g02240 vs. NCBI nr
Match: gi|659099282|ref|XP_008450521.1| (PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis melo])

HSP 1 Score: 104.8 bits (260), Expect = 9.1e-20
Identity = 50/62 (80.65%), Postives = 53/62 (85.48%), Query Frame = 1 

Query: 41  IRSFPENNQAPNVPVNQFMEG-SSLTGSL--DRLRTSWGNLPPSLMPPPEGGYPPLPFVD 100
           I  FPENNQ PNVP N+F++G SS TGSL  DRL TSWGNLPPSLMPPPEGGYPPLPFVD
Sbjct: 96  IAGFPENNQPPNVPFNRFVDGNSSSTGSLVSDRLGTSWGNLPPSLMPPPEGGYPPLPFVD 155

[Close]
BLAST of Cp4.1LG00g02240 vs. NCBI nr
Match: gi|449435572|ref|XP_004135569.1| (PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 1.0e-18
Identity = 48/59 (81.36%), Postives = 52/59 (88.14%), Query Frame = 1 

Query: 44  FPENNQAPNVPVNQFMEG-SSLTGSL--DRLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 100
           FPEN Q PNVPVN+F++G SS TGSL  DRL TSWGNLPPSLMPPP+GGYPPLPFVDWG
Sbjct: 98  FPENYQPPNVPVNRFVDGNSSSTGSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 156

[Close]
BLAST of Cp4.1LG00g02240 vs. NCBI nr
Match: gi|224122848|ref|XP_002318931.1| (hypothetical protein POPTR_0013s00620g [Populus trichocarpa])

HSP 1 Score: 80.1 bits (196), Expect = 2.4e-12
Identity = 40/70 (57.14%), Postives = 46/70 (65.71%), Query Frame = 1 

Query: 32  LATIFTPTTIRSFPENNQAPNVPVNQFMEGSSLTGSLDR--LRTSWGNLPPSLMPPPEGG 91
           L T F  +   +F +N Q+P +P NQ   GSS  G   R  +  SWGNLPPSL PPPEGG
Sbjct: 81  LHTNFATSQGTAFKDNVQSPTMPGNQLAGGSSFPGVAVRESMGMSWGNLPPSLKPPPEGG 140

Query: 92  YPPLPFVDWG 100
           YPPLPFVDWG
Sbjct: 141 YPPLPFVDWG 150

[Close]
BLAST of Cp4.1LG00g02240 vs. NCBI nr
Match: gi|731415967|ref|XP_010659728.1| (PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X1 [Vitis vinifera])

HSP 1 Score: 79.3 bits (194), Expect = 4.1e-12
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 1 

Query: 41  IRSFPENNQAPNVPVNQFMEGSSLTGSL--DRLRTSWGNLPPSLMPPPEGGYPPLPFVDW 100
           +  FP+N Q+ + P NQ + G  L G++  D +  SWGNLPPSL PPPEGGYPPLPF+DW
Sbjct: 92  VTGFPDNIQSLSNPGNQLVGGGPLPGNVVKDSMGNSWGNLPPSLKPPPEGGYPPLPFLDW 151

[Close]
BLAST of Cp4.1LG00g02240 vs. NCBI nr
Match: gi|470132887|ref|XP_004302306.1| (PREDICTED: zinc finger CCCH domain-containing protein 3 [Fragaria vesca subsp. vesca])

HSP 1 Score: 78.2 bits (191), Expect = 9.1e-12
Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = 1 

Query: 46  ENNQAPNVPVNQFMEGSSLTGSL--DRLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 100
           +N+Q+  +  NQ + GSSL   +  D +  SWGNLPPSLMPPPEGGYPPLPFVDWG
Sbjct: 95  DNSQSSTIQGNQMVAGSSLPDVVVRDNMGMSWGNLPPSLMPPPEGGYPPLPFVDWG 150

The following BLAST results are available for this feature:
BLAST of Cp4.1LG00g02240 vs. Swiss-Prot
Match NameE-valueIdentityDescription
C3H3_ORYSJ2.4e-1265.31Zinc finger CCCH domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=... [more]
BLAST of Cp4.1LG00g02240 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M1B0_CUCSA7.0e-1981.36Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560650 PE=4 SV=1[more]
B9I6N1_POPTR1.7e-1257.14Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s00620g PE=4 SV=1[more]
D7UA82_VITVI2.8e-1257.38Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g00610 PE=4 SV=... [more]
M5WL08_PRUPE6.3e-1264.29Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016420mg PE=4 SV=1[more]
A0A067JTM5_JATCU7.0e-1160.71Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23183 PE=4 SV=1[more]
BLAST of Cp4.1LG00g02240 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G26749.23.8e-0855.56 C2H2 and C2HC zinc fingers superfamily protein[more]
BLAST of Cp4.1LG00g02240 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659099282|ref|XP_008450521.1|9.1e-2080.65PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis melo][more]
gi|449435572|ref|XP_004135569.1|1.0e-1881.36PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis sativus][more]
gi|224122848|ref|XP_002318931.1|2.4e-1257.14hypothetical protein POPTR_0013s00620g [Populus trichocarpa][more]
gi|731415967|ref|XP_010659728.1|4.1e-1257.38PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X1 [Vitis vinife... [more]
gi|470132887|ref|XP_004302306.1|9.1e-1262.50PREDICTED: zinc finger CCCH domain-containing protein 3 [Fragaria vesca subsp. v... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG00g02240.1Cp4.1LG00g02240.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR16465NUCLEASE-RELATEDcoord: 41..99
score: 7.0
NoneNo IPR availablePANTHERPTHR16465:SF0ZINC FINGER MATRIN-TYPE PROTEIN 5coord: 41..99
score: 7.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG00g02240CmoCh11G012780Cucurbita moschata (Rifu)cmocpeB080
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG00g02240Cucurbita pepo (Zucchini)cpecpeB005