CmaCh11G012250 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh11G012250
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionNucleic acid binding / zinc ion binding protein
LocationCma_Chr11 : 7845914 .. 7848183 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGGCTTGGTTTCCAAAAAAAAATGGTTCATACACCCGTAGATCCATGGGTATAAGAGGTGAATCCTCGCATTTTGTTGTTTAATTTGGAGGAAGGAGGAGGAGGAAGAAGAAGGAGGAAGAAGGAAGAAGATGCCACTCGGAAAATATTACTGCGACTACTGCGAGAAGCAATTCCAAGACACTCCGTTTGCTCGAAAGCGCCATCTTCAAAGCCTCTCCCATCAGAAGGCCAAAGCTCTCTGGTTCGATTCCTTCAGAGGTCCTCCTCCATCTCTCTGCTTTCTCCTCTTCCCCTCATATCCTCCTCTCTTCCTAACTCTCTCTTCCTCTTCCTCTTCCCTGCAGACTCCAATCAACCTTTCTCTGATGCCTTTGGAACACGCGTCTGTAACCGATTCCTCACTACGGTATTCTTCTTCGCATCTTTTCTTCCTTCTATTTAACCTAACTTTTGCCTTTTCCGATTTCATTCTTTGCTCTCTACGATTCCAAAGGGCTTTTGCCAGTACGGTGATTCTTGCAAGTATTTTCACTCCAAGAACAATCTGCAGTACTCGAGTTCGCAGCCGATTGCAGGTTAACCCTAAACCCTACCTTACTCTGTCTCAACAAGCCAATGCGAAATTCGAAACCTAATGCTAATTATTTCGATCGATTTCCGGTCTGATTCAATATAAAAATCACAGGTTTTCCGGAGAATAATCAAGCCCCAAATGTTCCGGTGAATCAATTCATGGAGGGCAGTTCGTTGACAGGTATCTTGGAAGTGAAATCATCACATAGTTTTGTGTTCCATATTTTATTTGTTCATTCATAAAATGGTGGTGTTGGTTAAATTTTGAGTGGATCGTTACATACATCATTTACTGGAGCAAATTGCCGCCCACTCATACGAATGATGACCAACCAACTCCCATCTCCGTTGGATTTGAACAGGACTTGAACTCTCTTAGTGCTTGTTATGCATCTGTAAATCATTCTTTGTTTGAACAGCATCCATCATTGTTTTTTGTATCTGTAAAGCATTCTGCGTTCTACTACATATTTGAATCTTTTATCCCAGGATTTGATGGCCCTCTAATCATTCATATTTTTCAACTTTCTATGCTTGCATTTGATCTCAGGTAGTTTAGATAGATTGAGAACATCATGGGGAAATTTACCTCCATCATTGATGCCTCCTCCAGAGGGTGGTTACCCACCTCTCCCTTTTGTAGATTGGGGATAATCCACGAATCAGTTACTGGTACAAGTATACTCGGCTTCTCTTGTTTTTAACCTCCTACTCTATATAAAGCACTAATTTCTTCAAATTTGGTGTCCTTCACATCTAGACTATGAGCCTTTCATTGCTTTCCTTTCAAGTACCATATTCTTCAACACATGACTGTCTTTAACTTGTCCTCTGTTAATGTTTTAGCATTTAGTTGCACCACTTATGTGTAGATTATGCTGCTCTAAACTCGTTCGAGATTGACACTAACATAATGTAATATGAGGAGAGTTAATGAAGCAAATAAAAGAACACCTAATTCCAAGATCTTTTCACTAGCAAACTCAACATTTCATTCATAAAACAGGCATGGTCAGTTCCCAATGTTGTTGATATCGACAGAAATGAGTACAAAGAACACATGAATGCCTTTTCGGGCTACATATATTAGCCCCCCTTGTATAGCTCATTATTTATTTCATTCAAGCATCTTGACAAGCAGGAATCACACCAATACTATACATTGGTTGCCTAATAACTTGATGCCAGAACCTGTAACAAGGAAGCAATAAATTGCATCTGGGTGTCTTCATCTATGGTTTCGAATAGAGGGACATGAACAAATAGTGATTTGATGCCATTATCTTGGGCGCAGCGGAGGGAATGATAGTACACATAATTGCACACAAAGCGACAAGAATCGTTTGAAGTCATCACTTCATATCCCTTCTTCGCCAATGCCTTGGTTATTTCCTCCACTGGAAGAGAAGTCTGCAGGGCAGAGATGGGTAAAGGAATCAGGAAAAAAAGAAAAGAAAAAACTTTCATGATTAGCATAAAGAGATAAGAACCAGCAAAAAGGTGCTATATTTTCTATAAGTTTATGATTATGCCTTTGCAATCTTCCTCGATTAAATTCAACTTGTTATAATGTTTCGACGAAGATTATTCTAAATGACTTGGTATTTTGTTAGAAAGAATTCCAATTCAGTAGAGTTTATACACTTATACACATTGAAGTGTTTAATAAGTGCAATGTGTTCAATAGATCTGTG

mRNA sequence

TGGGCTTGGTTTCCAAAAAAAAATGGTTCATACACCCGTAGATCCATGGGTATAAGAGGTGAATCCTCGCATTTTGTTGTTTAATTTGGAGGAAGGAGGAGGAGGAAGAAGAAGGAGGAAGAAGGAAGAAGATGCCACTCGGAAAATATTACTGCGACTACTGCGAGAAGCAATTCCAAGACACTCCGTTTGCTCGAAAGCGCCATCTTCAAAGCCTCTCCCATCAGAAGGCCAAAGCTCTCTGGTTCGATTCCTTCAGAGACTCCAATCAACCTTTCTCTGATGCCTTTGGAACACGCGTCTGTAACCGATTCCTCACTACGGGCTTTTGCCAGTACGGTGATTCTTGCAAGTATTTTCACTCCAAGAACAATCTGCAGTACTCGAGTTCGCAGCCGATTGCAGGTTTTCCGGAGAATAATCAAGCCCCAAATGTTCCGGTGAATCAATTCATGGAGGGCAGTTCGTTGACAGGTAGTTTAGATAGATTGAGAACATCATGGGGAAATTTACCTCCATCATTGATGCCTCCTCCAGAGGGTGGTTACCCACCTCTCCCTTTTGTAGATTGGGGATAATCCACGAATCAGTTACTGCGGAGGGAATGATAGTACACATAATTGCACACAAAGCGACAAGAATCGTTTGAAGTCATCACTTCATATCCCTTCTTCGCCAATGCCTTGGTTATTTCCTCCACTGGAAGAGAAGTCTGCAGGGCAGAGATGGGTAAAGGAATCAGGAAAAAAAGAAAAGAAAAAACTTTCATGATTAGCATAAAGAGATAAGAACCAGCAAAAAGGTGCTATATTTTCTATAAGTTTATGATTATGCCTTTGCAATCTTCCTCGATTAAATTCAACTTGTTATAATGTTTCGACGAAGATTATTCTAAATGACTTGGTATTTTGTTAGAAAGAATTCCAATTCAGTAGAGTTTATACACTTATACACATTGAAGTGTTTAATAAGTGCAATGTGTTCAATAGATCTGTG

Coding sequence (CDS)

ATGCCACTCGGAAAATATTACTGCGACTACTGCGAGAAGCAATTCCAAGACACTCCGTTTGCTCGAAAGCGCCATCTTCAAAGCCTCTCCCATCAGAAGGCCAAAGCTCTCTGGTTCGATTCCTTCAGAGACTCCAATCAACCTTTCTCTGATGCCTTTGGAACACGCGTCTGTAACCGATTCCTCACTACGGGCTTTTGCCAGTACGGTGATTCTTGCAAGTATTTTCACTCCAAGAACAATCTGCAGTACTCGAGTTCGCAGCCGATTGCAGGTTTTCCGGAGAATAATCAAGCCCCAAATGTTCCGGTGAATCAATTCATGGAGGGCAGTTCGTTGACAGGTAGTTTAGATAGATTGAGAACATCATGGGGAAATTTACCTCCATCATTGATGCCTCCTCCAGAGGGTGGTTACCCACCTCTCCCTTTTGTAGATTGGGGATAA

Protein sequence

MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFRDSNQPFSDAFGTRVCNRFLTTGFCQYGDSCKYFHSKNNLQYSSSQPIAGFPENNQAPNVPVNQFMEGSSLTGSLDRLRTSWGNLPPSLMPPPEGGYPPLPFVDWG
Homology
[Close]
BLAST of CmaCh11G012250 vs. Swiss-Prot
Match: C3H3_ORYSJ (Zinc finger CCCH domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=Os01g0252200 PE=2 SV=2)

HSP 1 Score: 166.4 bits (420), Expect = 2.4e-40
Identity = 88/170 (51.76%), Postives = 106/170 (62.35%), Query Frame = 1 

Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFRDS-------------NQ 60
           MPLGKYYCDYCEKQFQDTP ARKRHL    H +A+ALW+D+ R               +Q
Sbjct: 1   MPLGKYYCDYCEKQFQDTPAARKRHLDGAQHHRARALWYDAVRRQELHGGGGGAPPLLHQ 60

Query: 61  PFSDAFGTRVCNRFLTTGFCQYGDSCKYFHSK---NNLQYSSSQPIAGFPENNQA----- 120
           P + A G  VC  F+ TG C++GDSC+YFH K    N   + S P++G P   Q+     
Sbjct: 61  PGAAAIG--VCQHFVRTGTCKFGDSCRYFHPKPPPANPGPAPSGPVSG-PMAQQSNIQGS 120

Query: 121 -PNVPVNQFMEGSSLTGSLDRLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 149
            PN    Q  +GSS +G++    TSWGNLPPSL PPPEGGYPP PFVDWG
Sbjct: 121 QPNFVGYQAADGSSFSGNILGGHTSWGNLPPSLRPPPEGGYPPFPFVDWG 167

[Close]
BLAST of CmaCh11G012250 vs. Swiss-Prot
Match: ZMAT5_BOVIN (Zinc finger matrin-type protein 5 OS=Bos taurus GN=ZMAT5 PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.6e-20
Identity = 58/167 (34.73%), Postives = 80/167 (47.90%), Query Frame = 1 

Query: 5   KYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFRDSNQPFSDAFGTRVCNRFLTT 64
           +Y+CDYC++ FQD    RK+HL  L H KAK LW+D FRD+     D    R C +FL T
Sbjct: 4   RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKLWYDMFRDAAAILLDEQNKRPCRKFLLT 63

Query: 65  GFCQYGDSCKYFH-SKNNLQYSSSQ------------PIAGFPE-------NNQAPNVPV 124
           G C +G +C++ H S+ +LQ  S Q             +A  PE         +A  +  
Sbjct: 64  GQCDFGSNCRFSHMSERDLQELSVQVEEERRAREWPLDVAELPEVCLEDWLEKRAKRLSS 123

Query: 125 NQFMEGSSLTGSLDRLRTSW---GNLPPSLMPPPEGGYPPLPFVDWG 149
                   +  ++ +    W     LPPSL  PP GG+P  P V WG
Sbjct: 124 APSSRAEPVRATVFQYPVGWPPVQELPPSLRAPPPGGWPLQPSVQWG 170

[Close]
BLAST of CmaCh11G012250 vs. Swiss-Prot
Match: ZMAT5_HUMAN (Zinc finger matrin-type protein 5 OS=Homo sapiens GN=ZMAT5 PE=1 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 7.9e-20
Identity = 60/167 (35.93%), Postives = 85/167 (50.90%), Query Frame = 1 

Query: 5   KYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFRDSNQPFSDAFGTRVCNRFLTT 64
           +Y+CDYC++ FQD    RK+HL  L H KAK +W+D FRD+     D    R C +FL T
Sbjct: 4   RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLDEQNKRPCRKFLLT 63

Query: 65  GFCQYGDSCKYFH-SKNNLQYSSSQPIAGFPENN---QAPNVP---VNQFME------GS 124
           G C +G +C++ H S+ +LQ  S Q             AP +P   +  ++E       S
Sbjct: 64  GQCDFGSNCRFSHMSERDLQELSIQVEEERRAREWLLDAPELPEGHLEDWLEKRAKRLSS 123

Query: 125 SLTGSLDRLRTS-------W---GNLPPSLMPPPEGGYPPLPFVDWG 149
           + +   + +RT+       W     LPPSL  PP GG+P  P V WG
Sbjct: 124 APSSRAEPIRTTVFQYPVGWPPVQELPPSLRAPPPGGWPLQPRVQWG 170

[Close]
BLAST of CmaCh11G012250 vs. Swiss-Prot
Match: ZMAT5_MOUSE (Zinc finger matrin-type protein 5 OS=Mus musculus GN=Zmat5 PE=2 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.9e-19
Identity = 58/167 (34.73%), Postives = 81/167 (48.50%), Query Frame = 1 

Query: 5   KYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFRDSNQPFSDAFGTRVCNRFLTT 64
           +Y+CDYC++ FQD    RK+HL  L H KAK +W+D FRD+     D    R C +FL T
Sbjct: 4   RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLDEQNKRPCRKFLLT 63

Query: 65  GFCQYGDSCKYFH-SKNNLQYSSSQ------------PIAGFPENNQAPNVPVNQFMEGS 124
           G C +G +C++ H S+ +LQ  S Q              A  PE +    +        S
Sbjct: 64  GQCDFGSNCRFSHMSEQDLQELSVQVEEERRAREWPLETAELPEGHLEDWLEKRAKRLSS 123

Query: 125 SLTGSLDRLRTS-------W---GNLPPSLMPPPEGGYPPLPFVDWG 149
           + +   + +RT+       W     LPPSL  PP GG+  L  V WG
Sbjct: 124 APSSRAEPIRTTVFQYPVGWPPMQELPPSLRAPPPGGWSVLSKVQWG 170

[Close]
BLAST of CmaCh11G012250 vs. Swiss-Prot
Match: ZMAT5_DANRE (Zinc finger matrin-type protein 5 OS=Danio rerio GN=zmat5 PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 9.7e-18
Identity = 52/170 (30.59%), Postives = 80/170 (47.06%), Query Frame = 1 

Query: 5   KYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFRDSNQPFSDAFGTRVCNRFLTT 64
           +YYCDYC++ FQD    RK+HL  + H +AK  WFD+FRD+    +D     VC +F+ T
Sbjct: 4   RYYCDYCDRSFQDNLHNRKKHLNGVQHHRAKKAWFDNFRDAATLLNDERSKEVCRKFVQT 63

Query: 65  GFCQYGDSCKYFHSKNNLQYSSSQPI------AGFPENNQAPNVPVNQFME------GSS 124
           G C +G SC++ H          Q I         P+ + +    V++++        + 
Sbjct: 64  GQCVFGTSCRFSHMSEKQMKMLEQKIDDEKRQKEDPDQDGSSERSVDEWLSRREKKLAAL 123

Query: 125 LTGSLDRLR--------------TSWGNLPPSLMPPPEGGYPPLPFVDWG 149
            +G + R+                S  +LPPSL PPP GG+      +WG
Sbjct: 124 TSGRVLRMEEEECTENIEIPPYLLSIPDLPPSLHPPPAGGWRVTVHNEWG 173

[Close]
BLAST of CmaCh11G012250 vs. TrEMBL
Match: A0A0A0M1B0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560650 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 2.8e-64
Identity = 123/156 (78.85%), Postives = 132/156 (84.62%), Query Frame = 1 

Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFRDSNQ--PFSDAFGTRVC 60
           MPLGKYYCDYC+KQFQDTPFARKRHLQSLSHQKAKALWFDSF+D NQ  P S  F  R+C
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRIC 60

Query: 61  NRFLTTGFCQYGDSCKYFHSKN---NLQYSSSQPIAGFPENNQAPNVPVNQFMEG-SSLT 120
           NRFL+TGFCQYGDSCKYFH  N   N   SSS P+AGFPEN Q PNVPVN+F++G SS T
Sbjct: 61  NRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSST 120

Query: 121 GSL--DRLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 149
           GSL  DRL TSWGNLPPSLMPPP+GGYPPLPFVDWG
Sbjct: 121 GSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 156

[Close]
BLAST of CmaCh11G012250 vs. TrEMBL
Match: D7UA82_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g00610 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 9.1e-55
Identity = 100/152 (65.79%), Postives = 121/152 (79.61%), Query Frame = 1 

Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFRDSNQPFSDAFGTRVCNR 60
           MPLGKY+CDYC+KQFQDTP ARKRHLQ L HQ+AKALW+DSFRD NQ  ++ +G  VCNR
Sbjct: 1   MPLGKYHCDYCDKQFQDTPSARKRHLQGLQHQRAKALWYDSFRDPNQIQAEGYGKGVCNR 60

Query: 61  FLTTGFCQYGDSCKYFHSKNNLQYSSSQ--PIAGFPENNQAPNVPVNQFMEGSSLTGSL- 120
           F+ TGFCQYGDSCKYFH K +LQ +++Q  P+ GFP+N Q+ + P NQ + G  L G++ 
Sbjct: 61  FVRTGFCQYGDSCKYFHPKQSLQNTNTQSIPVTGFPDNIQSLSNPGNQLVGGGPLPGNVV 120

Query: 121 -DRLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 149
            D +  SWGNLPPSL PPPEGGYPPLPF+DWG
Sbjct: 121 KDSMGNSWGNLPPSLKPPPEGGYPPLPFLDWG 152

[Close]
BLAST of CmaCh11G012250 vs. TrEMBL
Match: M5WL08_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016420mg PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.7e-48
Identity = 90/150 (60.00%), Postives = 109/150 (72.67%), Query Frame = 1 

Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFRDSNQPFSDAFGTRVCNR 60
           MPLGKYYC+YC+K+FQDTP AR+RHLQ L H +AKA W+DSF+D +  +++     VCNR
Sbjct: 1   MPLGKYYCEYCDKEFQDTPSARRRHLQGLQHLRAKAQWYDSFKDPSHAYTEGLTKGVCNR 60

Query: 61  FLTTGFCQYGDSCKYFHSKNNLQYSSSQPIAGFPENNQAPNVPVNQFMEGSSLTGSL--D 120
           F+ TGFC YGDSC+Y H KNN Q   +Q   G  +NNQ+     NQ + GSSL   +  D
Sbjct: 61  FVKTGFCPYGDSCRYLHPKNNQQNMVTQGAPGLIDNNQSSTFQENQLVGGSSLPDVVVRD 120

Query: 121 RLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 149
            +  SWGNLPPSLMPPPEGGYPPLPFVDWG
Sbjct: 121 SMGMSWGNLPPSLMPPPEGGYPPLPFVDWG 150

[Close]
BLAST of CmaCh11G012250 vs. TrEMBL
Match: A0A059D3K2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B01795 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 4.2e-44
Identity = 93/155 (60.00%), Postives = 111/155 (71.61%), Query Frame = 1 

Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSF-RDSNQPFSDAFGTRVCN 60
           MPLGKYYCDYC+KQFQDTP ARKRHLQ LSH +AKALWFDS   + NQ +++ +   VCN
Sbjct: 1   MPLGKYYCDYCDKQFQDTPGARKRHLQGLSHLRAKALWFDSLHHEPNQAYAEGYVRGVCN 60

Query: 61  RFLTTGFCQYGDSCKYFHSKNNLQYSSSQP-IAGFPENNQAPNVPVNQFMEGSSLTGSL- 120
           RF+ TGFCQYGDSCKYFH K+    SS  P  AG   N Q+  +P +  + G+SL G++ 
Sbjct: 61  RFVNTGFCQYGDSCKYFHPKS---VSSPAPRTAG--GNAQSTVIPGSHLVGGTSLQGNVV 120

Query: 121 ----DRLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 149
                   T+WGNLPPSL PPPEGGYP LPF+DWG
Sbjct: 121 VADGTGTATAWGNLPPSLKPPPEGGYPSLPFIDWG 150

[Close]
BLAST of CmaCh11G012250 vs. TrEMBL
Match: A0A067JTM5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23183 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 4.2e-44
Identity = 92/155 (59.35%), Postives = 111/155 (71.61%), Query Frame = 1 

Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFR--DSNQPFSDAFGTRVC 60
           MPLGKYYCDYCEK+FQDT  ARKRHLQS SH +AK+LW+ S R  D +Q ++D     +C
Sbjct: 1   MPLGKYYCDYCEKEFQDTAIARKRHLQSASHVRAKSLWYASLRSGDPSQTYADG-AKGIC 60

Query: 61  NRFLTTGFCQYGDSCKYFH--SKNNLQYS-SSQPIAGFPENNQAPNVPVNQFMEGSSLTG 120
           NRF+ TGFC YGDSCKY H  + NNLQ +  +   AG  +N Q+P +P +Q + GSSL G
Sbjct: 61  NRFVKTGFCPYGDSCKYLHPNNSNNLQNNVGTSQAAGLMDNVQSPFIPGSQLVGGSSLPG 120

Query: 121 SL--DRLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 149
            +  D +   WGNLPPSL PPPEGGY PLPFVDWG
Sbjct: 121 EMLRDSMGMPWGNLPPSLKPPPEGGYLPLPFVDWG 154

[Close]
BLAST of CmaCh11G012250 vs. TAIR10
Match: AT5G26749.2 (AT5G26749.2 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 142.1 bits (357), Expect = 2.7e-34
Identity = 81/172 (47.09%), Postives = 97/172 (56.40%), Query Frame = 1 

Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWF-DSFRDSNQPFSDAFGTR-VC 60
           MP GKYYCDYCEK+FQDT  ARKRHLQS  H +AKALW+  S  D   P    F T+ +C
Sbjct: 1   MPSGKYYCDYCEKEFQDTQVARKRHLQSKPHLRAKALWYSSSSSDLVNPQVSNFATKGLC 60

Query: 61  NRFLTT-------------------GFCQYGDSCKYFHSKNNLQYSSSQPIAGFPENNQA 120
           NRF+T+                    FC +GDSC+YFH  NN   +      GF  N Q 
Sbjct: 61  NRFITSVRRIDFVSLCSSFLAISGCNFCPFGDSCRYFHPNNNTGST------GFTNNTQL 120

Query: 121 PNVPVN-QFMEGSSLTGSL--DRLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 149
               +N Q ++GS+L       R  T W +LPPSL PPPE GYP LPF+DWG
Sbjct: 121 RVDMLNQQHIQGSTLNRDFVSGRPGTGWFDLPPSLKPPPEQGYPQLPFIDWG 166

[Close]
BLAST of CmaCh11G012250 vs. NCBI nr
Match: gi|659099282|ref|XP_008450521.1| (PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis melo])

HSP 1 Score: 260.8 bits (665), Expect = 1.5e-66
Identity = 127/157 (80.89%), Postives = 134/157 (85.35%), Query Frame = 1 

Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFRDSNQ--PFSDAFGTRVC 60
           MPLGKYYCDYC+KQFQDTPFARKRHLQSLSHQKAKALWFDSF+DSNQ  P S  F  R+C
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRIC 60

Query: 61  NRFLTTGFCQYGDSCKYFHSKN----NLQYSSSQPIAGFPENNQAPNVPVNQFMEG-SSL 120
           NRFL+TGFCQYGDSCKYFH KN    N   SSS PIAGFPENNQ PNVP N+F++G SS 
Sbjct: 61  NRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFPENNQPPNVPFNRFVDGNSSS 120

Query: 121 TGSL--DRLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 149
           TGSL  DRL TSWGNLPPSLMPPPEGGYPPLPFVDWG
Sbjct: 121 TGSLVSDRLGTSWGNLPPSLMPPPEGGYPPLPFVDWG 157

[Close]
BLAST of CmaCh11G012250 vs. NCBI nr
Match: gi|449435572|ref|XP_004135569.1| (PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis sativus])

HSP 1 Score: 252.7 bits (644), Expect = 4.0e-64
Identity = 123/156 (78.85%), Postives = 132/156 (84.62%), Query Frame = 1 

Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFRDSNQ--PFSDAFGTRVC 60
           MPLGKYYCDYC+KQFQDTPFARKRHLQSLSHQKAKALWFDSF+D NQ  P S  F  R+C
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRIC 60

Query: 61  NRFLTTGFCQYGDSCKYFHSKN---NLQYSSSQPIAGFPENNQAPNVPVNQFMEG-SSLT 120
           NRFL+TGFCQYGDSCKYFH  N   N   SSS P+AGFPEN Q PNVPVN+F++G SS T
Sbjct: 61  NRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSST 120

Query: 121 GSL--DRLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 149
           GSL  DRL TSWGNLPPSLMPPP+GGYPPLPFVDWG
Sbjct: 121 GSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 156

[Close]
BLAST of CmaCh11G012250 vs. NCBI nr
Match: gi|731415967|ref|XP_010659728.1| (PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X1 [Vitis vinifera])

HSP 1 Score: 221.1 bits (562), Expect = 1.3e-54
Identity = 100/152 (65.79%), Postives = 121/152 (79.61%), Query Frame = 1 

Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFRDSNQPFSDAFGTRVCNR 60
           MPLGKY+CDYC+KQFQDTP ARKRHLQ L HQ+AKALW+DSFRD NQ  ++ +G  VCNR
Sbjct: 1   MPLGKYHCDYCDKQFQDTPSARKRHLQGLQHQRAKALWYDSFRDPNQIQAEGYGKGVCNR 60

Query: 61  FLTTGFCQYGDSCKYFHSKNNLQYSSSQ--PIAGFPENNQAPNVPVNQFMEGSSLTGSL- 120
           F+ TGFCQYGDSCKYFH K +LQ +++Q  P+ GFP+N Q+ + P NQ + G  L G++ 
Sbjct: 61  FVRTGFCQYGDSCKYFHPKQSLQNTNTQSIPVTGFPDNIQSLSNPGNQLVGGGPLPGNVV 120

Query: 121 -DRLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 149
            D +  SWGNLPPSL PPPEGGYPPLPF+DWG
Sbjct: 121 KDSMGNSWGNLPPSLKPPPEGGYPPLPFLDWG 152

[Close]
BLAST of CmaCh11G012250 vs. NCBI nr
Match: gi|470132887|ref|XP_004302306.1| (PREDICTED: zinc finger CCCH domain-containing protein 3 [Fragaria vesca subsp. vesca])

HSP 1 Score: 213.0 bits (541), Expect = 3.5e-52
Identity = 95/150 (63.33%), Postives = 115/150 (76.67%), Query Frame = 1 

Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFRDSNQPFSDAFGTRVCNR 60
           MPLGKY C+YC KQFQDTP+AR+RHLQSL H +AKA WFDSF+D N  ++ + G  VCNR
Sbjct: 1   MPLGKYDCEYCNKQFQDTPYARRRHLQSLQHLRAKAQWFDSFKDPNDAYAQSLGRGVCNR 60

Query: 61  FLTTGFCQYGDSCKYFHSKNNLQYSSSQPIAGFPENNQAPNVPVNQFMEGSSLTGSL--D 120
           F+ TGFCQYGD+CKYFH KNN Q + +Q  +G  +N+Q+  +  NQ + GSSL   +  D
Sbjct: 61  FVNTGFCQYGDACKYFHPKNNQQNTITQGASGVTDNSQSSTIQGNQMVAGSSLPDVVVRD 120

Query: 121 RLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 149
            +  SWGNLPPSLMPPPEGGYPPLPFVDWG
Sbjct: 121 NMGMSWGNLPPSLMPPPEGGYPPLPFVDWG 150

[Close]
BLAST of CmaCh11G012250 vs. NCBI nr
Match: gi|595831527|ref|XP_007206291.1| (hypothetical protein PRUPE_ppa016420mg [Prunus persica])

HSP 1 Score: 200.3 bits (508), Expect = 2.4e-48
Identity = 90/150 (60.00%), Postives = 109/150 (72.67%), Query Frame = 1 

Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFRDSNQPFSDAFGTRVCNR 60
           MPLGKYYC+YC+K+FQDTP AR+RHLQ L H +AKA W+DSF+D +  +++     VCNR
Sbjct: 1   MPLGKYYCEYCDKEFQDTPSARRRHLQGLQHLRAKAQWYDSFKDPSHAYTEGLTKGVCNR 60

Query: 61  FLTTGFCQYGDSCKYFHSKNNLQYSSSQPIAGFPENNQAPNVPVNQFMEGSSLTGSL--D 120
           F+ TGFC YGDSC+Y H KNN Q   +Q   G  +NNQ+     NQ + GSSL   +  D
Sbjct: 61  FVKTGFCPYGDSCRYLHPKNNQQNMVTQGAPGLIDNNQSSTFQENQLVGGSSLPDVVVRD 120

Query: 121 RLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 149
            +  SWGNLPPSLMPPPEGGYPPLPFVDWG
Sbjct: 121 SMGMSWGNLPPSLMPPPEGGYPPLPFVDWG 150

The following BLAST results are available for this feature:
BLAST of CmaCh11G012250 vs. Swiss-Prot
Match NameE-valueIdentityDescription
C3H3_ORYSJ2.4e-4051.76Zinc finger CCCH domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=... [more]
ZMAT5_BOVIN1.6e-2034.73Zinc finger matrin-type protein 5 OS=Bos taurus GN=ZMAT5 PE=2 SV=1[more]
ZMAT5_HUMAN7.9e-2035.93Zinc finger matrin-type protein 5 OS=Homo sapiens GN=ZMAT5 PE=1 SV=1[more]
ZMAT5_MOUSE3.9e-1934.73Zinc finger matrin-type protein 5 OS=Mus musculus GN=Zmat5 PE=2 SV=1[more]
ZMAT5_DANRE9.7e-1830.59Zinc finger matrin-type protein 5 OS=Danio rerio GN=zmat5 PE=2 SV=1[more]
BLAST of CmaCh11G012250 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M1B0_CUCSA2.8e-6478.85Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560650 PE=4 SV=1[more]
D7UA82_VITVI9.1e-5565.79Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g00610 PE=4 SV=... [more]
M5WL08_PRUPE1.7e-4860.00Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016420mg PE=4 SV=1[more]
A0A059D3K2_EUCGR4.2e-4460.00Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B01795 PE=4 SV=1[more]
A0A067JTM5_JATCU4.2e-4459.35Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23183 PE=4 SV=1[more]
BLAST of CmaCh11G012250 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G26749.22.7e-3447.09 C2H2 and C2HC zinc fingers superfamily protein[more]
BLAST of CmaCh11G012250 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659099282|ref|XP_008450521.1|1.5e-6680.89PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis melo][more]
gi|449435572|ref|XP_004135569.1|4.0e-6478.85PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis sativus][more]
gi|731415967|ref|XP_010659728.1|1.3e-5465.79PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X1 [Vitis vinife... [more]
gi|470132887|ref|XP_004302306.1|3.5e-5263.33PREDICTED: zinc finger CCCH domain-containing protein 3 [Fragaria vesca subsp. v... [more]
gi|595831527|ref|XP_007206291.1|2.4e-4860.00hypothetical protein PRUPE_ppa016420mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
IPR003604Matrin/U1-like-C_Znf_C2H2
IPR013085U1-CZ_Znf_C2H2
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0046872 metal ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh11G012250.1CmaCh11G012250.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeGENE3DG3DSA:4.10.1000.10coord: 53..82
score: 1.
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 53..79
score: 2.
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 52..79
score: 5.
IPR000571Zinc finger, CCCH-typePROFILEPS50103ZF_C3H1coord: 52..80
score: 14
IPR000571Zinc finger, CCCH-typeunknownSSF90229CCCH zinc fingercoord: 53..83
score: 3.1
IPR003604Zinc finger, U1-typeSMARTSM00451ZnF_U1_5coord: 3..38
score: 1.
IPR013085Zinc finger, U1-C typePFAMPF06220zf-U1coord: 5..36
score: 3.
NoneNo IPR availablePANTHERPTHR16465NUCLEASE-RELATEDcoord: 2..148
score: 3.0
NoneNo IPR availableunknownSSF57667beta-beta-alpha zinc fingerscoord: 4..60
score: 3.64

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh11G012250Cucsa.050840Cucumber (Gy14) v1cgycmaB0055
CmaCh11G012250Cla005152Watermelon (97103) v1cmawmB101
CmaCh11G012250MELO3C015248Melon (DHL92) v3.5.1cmameB108
CmaCh11G012250ClCG03G017800Watermelon (Charleston Gray)cmawcgB114
CmaCh11G012250CSPI01G25540Wild cucumber (PI 183967)cmacpiB105
CmaCh11G012250CsaV3_1G037970Cucumber (Chinese Long) v3cmacucB0120
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh11G012250Bottle gourd (USVL1VR-Ls)cmalsiB133
CmaCh11G012250Bottle gourd (USVL1VR-Ls)cmalsiB142
CmaCh11G012250Melon (DHL92) v3.6.1cmamedB116
CmaCh11G012250Watermelon (97103) v2cmawmbB117
CmaCh11G012250Wax gourdcmawgoB0171
CmaCh11G012250Cucurbita maxima (Rimu)cmacmaB085
CmaCh11G012250Cucurbita moschata (Rifu)cmacmoB115
CmaCh11G012250Cucumber (Chinese Long) v2cmacuB106