Csa3G171230 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G171230
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Gb\|AAD49763.1
Location	Chr3 : 11436643 .. 11437482 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTCTCTTTTTCTTATCTATTGTTTATTAATAATTCTTTGTGTTCTATATATTGTGACCCATTTCACTTCCAACCCCTTTCAGCCAAACACATTCTCAAACCTCACCAAATTATTATCATTACTATTATTTGTTACTGCTACAACTACAACAACTCTAATGGCTTCTTGGAAGAAAACAATCATTTCTCCCTTCAGAAAAGCTTGCACCATCTTCAACCAAAACCCTCGAGATCATCCTAAAAAGTCTCATTCCGACTCAGGTAATTTTACGACCCCCCATGCATCCACTTCTTTCTTCTTCTTCTTCTTCTTCTTCTTCAAAACAACACACGAGACCTTACTTTTCTTTTTTAAATCATCATCTCTTACATTTTTACAATTGTTTAATTCTCTGTTTCTTTAGTATATAATATATATGTGTGTGTGTGTGTGTGTGTGTATATATATCCAGCGTCTGAACATACATAGCTTCTTCTTTTTGTTTGTTTTTTAGAGCAAGAGAAGAGAGTGGATGTGAGGAATCTCCAAGGAGAGGTTATGGCATGTGGGTATGAAGACGTGCATGTGATGTGGTCTATTTTAGATCACAAGGCCAACTCCGCTGCCACCACCGCTACCGCTACTTGCAATGTCTCTTCTTAACAACCACCACCACCACGACCAATGTCTCAGACTATGACTACTGCTTAATTAAATTTGTTGTAGATAAAGCTTGCTGCTGCTGCTCAATACATGATGATCGATCTCTATGGTATTTTGTGATCAGTTGATGATGATGATGATTTTGTTTATTTAATTATGTGTAGGGAATGAATATATTATCAAATGAATCCCCAT

mRNA sequence

ATGGCTTCTTGGAAGAAAACAATCATTTCTCCCTTCAGAAAAGCTTGCACCATCTTCAACCAAAACCCTCGAGATCATCCTAAAAAGTCTCATTCCGACTCAGAGCAAGAGAAGAGAGTGGATGTGAGGAATCTCCAAGGAGAGGTTATGGCATGTGGGTATGAAGACGTGCATGTGATGTGGTCTATTTTAGATCACAAGGCCAACTCCGCTGCCACCACCGCTACCGCTACTTGCAATGTCTCTTCTTAA

Coding sequence (CDS)

ATGGCTTCTTGGAAGAAAACAATCATTTCTCCCTTCAGAAAAGCTTGCACCATCTTCAACCAAAACCCTCGAGATCATCCTAAAAAGTCTCATTCCGACTCAGAGCAAGAGAAGAGAGTGGATGTGAGGAATCTCCAAGGAGAGGTTATGGCATGTGGGTATGAAGACGTGCATGTGATGTGGTCTATTTTAGATCACAAGGCCAACTCCGCTGCCACCACCGCTACCGCTACTTGCAATGTCTCTTCTTAA

Protein sequence

MASWKKTIISPFRKACTIFNQNPRDHPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMWSILDHKANSAATTATATCNVSS*

Homology

[Close]

BLAST of Csa3G171230 vs. TrEMBL
Match: A0A0A0L5H1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171230 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 2.5e-41
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1


Query: 1  MASWKKTIISPFRKACTIFNQNPRDHPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60
          MASWKKTIISPFRKACTIFNQNPRDHPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM
Sbjct: 1  MASWKKTIISPFRKACTIFNQNPRDHPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60

Query: 61 WSILDHKANSAATTATATCNVSS 84
          WSILDHKANSAATTATATCNVSS
Sbjct: 61 WSILDHKANSAATTATATCNVSS 83

[Close]

BLAST of Csa3G171230 vs. TrEMBL
Match: A0A059B5L7_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_H04140 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 8.6e-18
Identity = 49/65 (75.38%), Postives = 52/65 (80.00%), Query Frame = 1


Query: 1   MASWKKTIISPFRKACTIFNQNPRDHPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60
           MASWKKTI SPFRKACT FNQ+P    KKSH   E EKRV++ NLQGEVMAC YEDV VM
Sbjct: 42  MASWKKTITSPFRKACTFFNQSP-SRDKKSHQ--EHEKRVNMMNLQGEVMACAYEDVQVM 101

Query: 61  WSILD 66
           WSILD
Sbjct: 102 WSILD 103

[Close]

BLAST of Csa3G171230 vs. TrEMBL
Match: A0A067K874_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19104 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.5e-17
Identity = 50/83 (60.24%), Postives = 57/83 (68.67%), Query Frame = 1


Query: 1  MASWKKTIISPFRKACTIFNQNPRDHPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60
          MASWKKTI SPF+KACT FNQ PRD  KKS  +   E RV V +L GEVMACGYEDV VM
Sbjct: 1  MASWKKTIASPFKKACTFFNQQPRD--KKSQPEPGNENRVMVMDLHGEVMACGYEDVQVM 60

Query: 61 WSILDHKANSAATTATATCNVSS 84
          WSILD        + +  CN++S
Sbjct: 61 WSILD-------KSKSTNCNLTS 74

[Close]

BLAST of Csa3G171230 vs. TrEMBL
Match: A0A0L9T617_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan213s004100 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 5.6e-17
Identity = 50/83 (60.24%), Postives = 58/83 (69.88%), Query Frame = 1


Query: 1  MASWKKTIISPFRKACTIFNQNPRDHPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60
          MASWKKTI +PF+KACT FNQ P   PKK  S +EQE R  + +L GEVMACGYEDV VM
Sbjct: 1  MASWKKTIATPFKKACTFFNQQPPRDPKK--SQTEQENR--IMDLHGEVMACGYEDVQVM 60

Query: 61 WSILDHKANSAATTATATCNVSS 84
          WSILD   +SA       CN++S
Sbjct: 61 WSILDKSKSSA-------CNITS 72

[Close]

BLAST of Csa3G171230 vs. TrEMBL
Match: A0A0S3RH73_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G294300 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 5.6e-17
Identity = 50/83 (60.24%), Postives = 58/83 (69.88%), Query Frame = 1


Query: 1  MASWKKTIISPFRKACTIFNQNPRDHPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60
          MASWKKTI +PF+KACT FNQ P   PKK  S +EQE R  + +L GEVMACGYEDV VM
Sbjct: 1  MASWKKTIATPFKKACTFFNQQPPRDPKK--SQTEQENR--IMDLHGEVMACGYEDVQVM 60

Query: 61 WSILDHKANSAATTATATCNVSS 84
          WSILD   +SA       CN++S
Sbjct: 61 WSILDKSKSSA-------CNITS 72

[Close]

BLAST of Csa3G171230 vs. TAIR10
Match: AT3G17580.1 (AT3G17580.1 unknown protein)

HSP 1 Score: 83.2 bits (204), Expect = 8.5e-17
Identity = 47/78 (60.26%), Postives = 56/78 (71.79%), Query Frame = 1


Query: 1  MASWKKTIISPFRKACTIFNQNPRDHPKK-------SHSDSEQEKRVDVRNLQGEVMACG 60
          MASWKKTI +PF+KA T FNQ P+  PKK       + +  E EKR+ V+ LQGEVMACG
Sbjct: 1  MASWKKTIATPFKKAATFFNQ-PQQSPKKGCRGRMDAQAREEHEKRM-VQELQGEVMACG 60

Query: 61 YEDVHVMWSILDHKANSA 72
          Y+DV VMWSILD K+NS+
Sbjct: 61 YDDVLVMWSILD-KSNSS 75

[Close]

BLAST of Csa3G171230 vs. TAIR10
Match: AT1G48330.1 (AT1G48330.1 unknown protein)

HSP 1 Score: 80.5 bits (197), Expect = 5.5e-16
Identity = 40/71 (56.34%), Postives = 51/71 (71.83%), Query Frame = 1


Query: 1  MASWKKTIISPFRKACTIFNQNPRDHPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60
          MASWKKTI +PF+KA T FNQ  + +   +    E+ ++  V+ LQG+VMACGYEDV VM
Sbjct: 1  MASWKKTIATPFKKAATFFNQPQQTNRHANAKAREEHEKRTVQELQGDVMACGYEDVLVM 60

Query: 61 WSILDHKANSA 72
          WSILD K+NS+
Sbjct: 61 WSILD-KSNSS 70

[Close]

BLAST of Csa3G171230 vs. NCBI nr
Match: gi|449459806|ref|XP_004147637.1| (PREDICTED: uncharacterized protein LOC101206709 [Cucumis sativus])

HSP 1 Score: 175.6 bits (444), Expect = 3.6e-41
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1


Query: 1  MASWKKTIISPFRKACTIFNQNPRDHPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60
          MASWKKTIISPFRKACTIFNQNPRDHPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM
Sbjct: 1  MASWKKTIISPFRKACTIFNQNPRDHPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60

Query: 61 WSILDHKANSAATTATATCNVSS 84
          WSILDHKANSAATTATATCNVSS
Sbjct: 61 WSILDHKANSAATTATATCNVSS 83

[Close]

BLAST of Csa3G171230 vs. NCBI nr
Match: gi|659077054|ref|XP_008439007.1| (PREDICTED: uncharacterized protein LOC103483930 isoform X3 [Cucumis melo])

HSP 1 Score: 167.9 bits (424), Expect = 7.4e-39
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 1


Query: 1  MASWKKTIISPFRKACTIFNQNPRDHPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60
          MASWKKTIISPFRKACTIFNQNPRD PKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM
Sbjct: 1  MASWKKTIISPFRKACTIFNQNPRD-PKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60

Query: 61 WSILDHKANSAATTATATCNVSS 84
          WSILDHKANSAATTATATCNVSS
Sbjct: 61 WSILDHKANSAATTATATCNVSS 82

[Close]

BLAST of Csa3G171230 vs. NCBI nr
Match: gi|629095418|gb|KCW61413.1| (hypothetical protein EUGRSUZ_H04140, partial [Eucalyptus grandis])

HSP 1 Score: 97.4 bits (241), Expect = 1.2e-17
Identity = 49/65 (75.38%), Postives = 52/65 (80.00%), Query Frame = 1


Query: 1   MASWKKTIISPFRKACTIFNQNPRDHPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60
           MASWKKTI SPFRKACT FNQ+P    KKSH   E EKRV++ NLQGEVMAC YEDV VM
Sbjct: 42  MASWKKTITSPFRKACTFFNQSP-SRDKKSHQ--EHEKRVNMMNLQGEVMACAYEDVQVM 101

Query: 61  WSILD 66
           WSILD
Sbjct: 102 WSILD 103

[Close]

BLAST of Csa3G171230 vs. NCBI nr
Match: gi|702447391|ref|XP_010024889.1| (PREDICTED: uncharacterized protein LOC104415311 [Eucalyptus grandis])

HSP 1 Score: 97.4 bits (241), Expect = 1.2e-17
Identity = 49/65 (75.38%), Postives = 52/65 (80.00%), Query Frame = 1


Query: 1  MASWKKTIISPFRKACTIFNQNPRDHPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60
          MASWKKTI SPFRKACT FNQ+P    KKSH   E EKRV++ NLQGEVMAC YEDV VM
Sbjct: 1  MASWKKTITSPFRKACTFFNQSP-SRDKKSHQ--EHEKRVNMMNLQGEVMACAYEDVQVM 60

Query: 61 WSILD 66
          WSILD
Sbjct: 61 WSILD 62

[Close]

BLAST of Csa3G171230 vs. NCBI nr
Match: gi|1009163788|ref|XP_015900149.1| (PREDICTED: uncharacterized protein LOC107433374 [Ziziphus jujuba])

HSP 1 Score: 96.7 bits (239), Expect = 2.1e-17
Identity = 50/77 (64.94%), Postives = 55/77 (71.43%), Query Frame = 1


Query: 1  MASWKKTIISPFRKACTIFNQNPRDHPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60
          MASWKKTI SPFRKACT FNQ PRDH K     S+Q+    V +L GEVMAC YEDV VM
Sbjct: 1  MASWKKTITSPFRKACTFFNQQPRDHKK-----SQQDNETRVMDLHGEVMACSYEDVQVM 60

Query: 61 WSILDHKANSAATTATA 78
          WSILD K+ SAA   T+
Sbjct: 61 WSILD-KSKSAACKITS 71

The following BLAST results are available for this feature:

BLAST of Csa3G171230 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5H1_CUCSA	2.5e-41	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171230 PE=4 SV=1	[more]
A0A059B5L7_EUCGR	8.6e-18	75.38	Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_H04140 PE=4 ...	[more]
A0A067K874_JATCU	1.5e-17	60.24	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19104 PE=4 SV=1	[more]
A0A0L9T617_PHAAN	5.6e-17	60.24	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan213s004100 PE=4 SV=1	[more]
A0A0S3RH73_PHAAN	5.6e-17	60.24	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G294300 PE=...	[more]

BLAST of Csa3G171230 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G17580.1	8.5e-17	60.26	unknown protein	[more]
AT1G48330.1	5.5e-16	56.34	unknown protein	[more]

BLAST of Csa3G171230 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449459806\|ref\|XP_004147637.1\|	3.6e-41	100.00	PREDICTED: uncharacterized protein LOC101206709 [Cucumis sativus]	[more]
gi\|659077054\|ref\|XP_008439007.1\|	7.4e-39	98.80	PREDICTED: uncharacterized protein LOC103483930 isoform X3 [Cucumis melo]	[more]
gi\|629095418\|gb\|KCW61413.1\|	1.2e-17	75.38	hypothetical protein EUGRSUZ_H04140, partial [Eucalyptus grandis]	[more]
gi\|702447391\|ref\|XP_010024889.1\|	1.2e-17	75.38	PREDICTED: uncharacterized protein LOC104415311 [Eucalyptus grandis]	[more]
gi\|1009163788\|ref\|XP_015900149.1\|	2.1e-17	64.94	PREDICTED: uncharacterized protein LOC107433374 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU145209	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G171230.1	Csa3G171230.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU145209	CU145209	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33181	FAMILY NOT NAMED	coord: 2..72 score: 3.2
None	No IPR available	PANTHER	PTHR33181:SF10	GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MKP6	coord: 2..72 score: 3.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G171230	Cla021837	Watermelon (97103) v1	cuwmB233
Csa3G171230	MELO3C006761	Melon (DHL92) v3.5.1	cumeB236
Csa3G171230	ClCG05G006950	Watermelon (Charleston Gray)	cuwcgB222
Csa3G171230	Lsi05G013760	Bottle gourd (USVL1VR-Ls)	culsiB210
Csa3G171230	Cla97C05G088600	Watermelon (97103) v2	cuwmbB204
Csa3G171230	Bhi01G000833	Wax gourd	cuwgoB269
Csa3G171230	CSPI03G15450	Wild cucumber (PI 183967)	cpicuB120
Csa3G171230	Cucsa.252090	Cucumber (Gy14) v1	cgycuB366
Csa3G171230	CmaCh06G015940	Cucurbita maxima (Rimu)	cmacuB814
Csa3G171230	CmaCh14G015510	Cucurbita maxima (Rimu)	cmacuB253
Csa3G171230	CmoCh06G015890	Cucurbita moschata (Rifu)	cmocuB806
Csa3G171230	CmoCh14G015870	Cucurbita moschata (Rifu)	cmocuB239
Csa3G171230	Cp4.1LG03g12120	Cucurbita pepo (Zucchini)	cpecuB609
Csa3G171230	Cp4.1LG08g05480	Cucurbita pepo (Zucchini)	cpecuB859
Csa3G171230	CsGy3G015520	Cucumber (Gy14) v2	cgybcuB109
Csa3G171230	Carg25663	Silver-seed gourd	carcuB0757

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G171230	Melon (DHL92) v3.6.1	cumedB223
Csa3G171230	Silver-seed gourd	carcuB0306