MELO3C035553.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C035553.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Cyclin-dependent protein kinase inhibitor Siamese
Location	chr12 : 8819399 .. 8819731 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCAAATTCACAAATCTGATCAAGAGAAGGTATTAGAAACCCCAAAGGCACTGGAATACGGTGATCGAAGCACGGAGGAAGGTAGCGGAGAAGCACTTAAGGCAGCGGAGGATGATGAAGGAGAGAGTTGTCGAACACCAACATCACTCCGACATCGAATTCCGATCGCACAAAGCTGCCCGACGACACCAAGAAAGCAGAGAGTTGCGAGAAAGAGGAAAATTTCTGACCAAAGCTTCTTTGAGGCCACCGGAAGAGGAGAGGTAGAATCCTTGTTTGGCTTATTTTATAGGGTTTCTTCTTCTAAAAGAAGGTGTACAAGTGTATAA

mRNA sequence

ATGTCTCAAATTCACAAATCTGATCAAGAGAAGGTATTAGAAACCCCAAAGGCACTGGAATACGGTGATCGAAGCACGGAGGAAGGTAGCGGAGAAGCACTTAAGGCAGCGGAGGATGATGAAGGAGAGAGTTGTCGAACACCAACATCACTCCGACATCGAATTCCGATCGCACAAAGCTGCCCGACGACACCAAGAAAGCAGAGAGTTGCGAGAAAGAGGAAAATTTCTGACCAAAGCTTCTTTGAGGCCACCGGAAGAGGAGAGGTAGAATCCTTGTTTGGCTTATTTTATAGGGTTTCTTCTTCTAAAAGAAGGTGTACAAGTGTATAA

Coding sequence (CDS)

ATGTCTCAAATTCACAAATCTGATCAAGAGAAGGTATTAGAAACCCCAAAGGCACTGGAATACGGTGATCGAAGCACGGAGGAAGGTAGCGGAGAAGCACTTAAGGCAGCGGAGGATGATGAAGGAGAGAGTTGTCGAACACCAACATCACTCCGACATCGAATTCCGATCGCACAAAGCTGCCCGACGACACCAAGAAAGCAGAGAGTTGCGAGAAAGAGGAAAATTTCTGACCAAAGCTTCTTTGAGGCCACCGGAAGAGGAGAGGTAGAATCCTTGTTTGGCTTATTTTATAGGGTTTCTTCTTCTAAAAGAAGGTGTACAAGTGTATAA

Protein sequence

MSQIHKSDQEKVLETPKALEYGDRSTEEGSGEALKAAEDDEGESCRTPTSLRHRIPIAQSCPTTPRKQRVARKRKISDQSFFEATGRGEVESLFGLFYRVSSSKRRCTSV

Homology

[Close]

BLAST of MELO3C035553.2 vs. NCBI nr
Match: KGN64869.1 (hypothetical protein Csa_1G135270 [Cucumis sativus])

HSP 1 Score: 150.6 bits (379), Expect = 3.1e-33
Identity = 76/89 (85.39%), Postives = 81/89 (91.01%), Query Frame = 0


Query: 1  MSQIHKSDQEKVLETPKALEYGDRSTEEGSGEALKAAEDDEGESCRTPTSLRHRIPIAQS 60
          MSQ HKSDQ+KVLE P+A E+GDRSTEEG GEALKAAE D+GESCRTPTS +HRIPIAQS
Sbjct: 1  MSQFHKSDQQKVLEAPEAPEHGDRSTEEGRGEALKAAEHDDGESCRTPTSPQHRIPIAQS 60

Query: 61 CPTTPRKQRVARKRKISDQSFFEATGRGE 90
          CPTTPRKQRV RKRK SDQSFFEATGRGE
Sbjct: 61 CPTTPRKQRVVRKRKFSDQSFFEATGRGE 89

[Close]

BLAST of MELO3C035553.2 vs. NCBI nr
Match: XP_015388774.1 (cyclin-dependent protein kinase inhibitor SMR2 [Citrus sinensis])

HSP 1 Score: 77.0 bits (188), Expect = 4.4e-11
Identity = 52/106 (49.06%), Postives = 63/106 (59.43%), Query Frame = 0


Query: 13  LETPKALEYGDRSTEEGSGEALKAA-EDDEGESCRTPTSLRHRIPIAQSCPTTPRK--QR 72
           +  PK        TEE +GE ++AA ED   E C+TPTS  H+IP  QSCPTTPRK  Q 
Sbjct: 10  INLPKLKPSSKIQTEEEAGEEIQAASEDYTNEDCKTPTSSDHKIPKIQSCPTTPRKKGQV 69

Query: 73  VARKRKISDQSFFEATGRGEVESLF---GLFYRVSSS--KRRCTSV 111
              KRK+ +  FFEATGR EVES F      +RV S   K+RC S+
Sbjct: 70  SFHKRKMHEVLFFEATGREEVESFFRSHSELFRVDSHAVKKRCKSL 115

[Close]

BLAST of MELO3C035553.2 vs. NCBI nr
Match: ESR37663.1 (hypothetical protein CICLE_v10029845mg [Citrus clementina])

HSP 1 Score: 76.6 bits (187), Expect = 5.7e-11
Identity = 52/106 (49.06%), Postives = 63/106 (59.43%), Query Frame = 0


Query: 13  LETPKALEYGDRSTEEGSGEALKAA-EDDEGESCRTPTSLRHRIPIAQSCPTTPRK--QR 72
           +  PK        TEE +GE ++AA ED   E C+TPTS  H+IP  QSCPTTPRK  Q 
Sbjct: 16  INLPKLKPSSKIQTEEEAGEEIQAASEDYTNEDCKTPTSSDHKIPKIQSCPTTPRKKVQV 75

Query: 73  VARKRKISDQSFFEATGRGEVESLF---GLFYRVSSS--KRRCTSV 111
              KRK+ +  FFEATGR EVES F      +RV S   K+RC S+
Sbjct: 76  SFHKRKMHEFLFFEATGREEVESFFRSNSELFRVGSHAVKKRCKSL 121

[Close]

BLAST of MELO3C035553.2 vs. NCBI nr
Match: GAY58700.1 (hypothetical protein CUMW_188970 [Citrus unshiu])

HSP 1 Score: 76.6 bits (187), Expect = 5.7e-11
Identity = 52/106 (49.06%), Postives = 63/106 (59.43%), Query Frame = 0


Query: 13  LETPKALEYGDRSTEEGSGEALKAA-EDDEGESCRTPTSLRHRIPIAQSCPTTPRK--QR 72
           +  PK        TEE +GE ++AA ED   E C+TPTS  H+IP  QSCPTTPRK  Q 
Sbjct: 16  INLPKLKPSSKIQTEEEAGEEIQAASEDYTNEDCKTPTSSDHKIPKIQSCPTTPRKKGQV 75

Query: 73  VARKRKISDQSFFEATGRGEVESLF---GLFYRVSSS--KRRCTSV 111
              KRK+ +  FFEATGR EVES F      +RV S   K+RC S+
Sbjct: 76  SFHKRKMHEFLFFEATGREEVESFFRSHSELFRVDSHAVKKRCKSL 121

[Close]

BLAST of MELO3C035553.2 vs. NCBI nr
Match: XP_006424423.2 (cyclin-dependent protein kinase inhibitor SMR2 [Citrus clementina])

HSP 1 Score: 76.6 bits (187), Expect = 5.7e-11
Identity = 52/106 (49.06%), Postives = 63/106 (59.43%), Query Frame = 0


Query: 13  LETPKALEYGDRSTEEGSGEALKAA-EDDEGESCRTPTSLRHRIPIAQSCPTTPRK--QR 72
           +  PK        TEE +GE ++AA ED   E C+TPTS  H+IP  QSCPTTPRK  Q 
Sbjct: 10  INLPKLKPSSKIQTEEEAGEEIQAASEDYTNEDCKTPTSSDHKIPKIQSCPTTPRKKVQV 69

Query: 73  VARKRKISDQSFFEATGRGEVESLF---GLFYRVSSS--KRRCTSV 111
              KRK+ +  FFEATGR EVES F      +RV S   K+RC S+
Sbjct: 70  SFHKRKMHEFLFFEATGREEVESFFRSNSELFRVGSHAVKKRCKSL 115

[Close]

BLAST of MELO3C035553.2 vs. TAIR10
Match: AT1G08180.1 (unknown protein)

HSP 1 Score: 43.1 bits (100), Expect = 1.3e-04
Identity = 28/59 (47.46%), Postives = 37/59 (62.71%), Query Frame = 0


Query: 43 ESCRTPTSLRHRIPIAQSCPTTPRKQ----RVARKRKIS-DQSFFEAT--GRGEVESLF 95
          ES  TPTS  H+IP  ++CP  PRK+     + +K ++S D  FFEAT  G  EVE+LF
Sbjct: 37 ESLCTPTSSDHKIPEVETCPPPPRKRPREISLTKKTRLSKDLRFFEATDVGSQEVETLF 95

[Close]

BLAST of MELO3C035553.2 vs. TrEMBL
Match: tr|A0A0A0LV74|A0A0A0LV74_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G135270 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.1e-33
Identity = 76/89 (85.39%), Postives = 81/89 (91.01%), Query Frame = 0


Query: 1  MSQIHKSDQEKVLETPKALEYGDRSTEEGSGEALKAAEDDEGESCRTPTSLRHRIPIAQS 60
          MSQ HKSDQ+KVLE P+A E+GDRSTEEG GEALKAAE D+GESCRTPTS +HRIPIAQS
Sbjct: 1  MSQFHKSDQQKVLEAPEAPEHGDRSTEEGRGEALKAAEHDDGESCRTPTSPQHRIPIAQS 60

Query: 61 CPTTPRKQRVARKRKISDQSFFEATGRGE 90
          CPTTPRKQRV RKRK SDQSFFEATGRGE
Sbjct: 61 CPTTPRKQRVVRKRKFSDQSFFEATGRGE 89

[Close]

BLAST of MELO3C035553.2 vs. TrEMBL
Match: tr|V4RSW1|V4RSW1_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10029845mg PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.8e-11
Identity = 52/106 (49.06%), Postives = 63/106 (59.43%), Query Frame = 0


Query: 13  LETPKALEYGDRSTEEGSGEALKAA-EDDEGESCRTPTSLRHRIPIAQSCPTTPRK--QR 72
           +  PK        TEE +GE ++AA ED   E C+TPTS  H+IP  QSCPTTPRK  Q 
Sbjct: 16  INLPKLKPSSKIQTEEEAGEEIQAASEDYTNEDCKTPTSSDHKIPKIQSCPTTPRKKVQV 75

Query: 73  VARKRKISDQSFFEATGRGEVESLF---GLFYRVSSS--KRRCTSV 111
              KRK+ +  FFEATGR EVES F      +RV S   K+RC S+
Sbjct: 76  SFHKRKMHEFLFFEATGREEVESFFRSNSELFRVGSHAVKKRCKSL 121

[Close]

BLAST of MELO3C035553.2 vs. TrEMBL
Match: tr|A0A2H5Q221|A0A2H5Q221_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_188970 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.8e-11
Identity = 52/106 (49.06%), Postives = 63/106 (59.43%), Query Frame = 0


Query: 13  LETPKALEYGDRSTEEGSGEALKAA-EDDEGESCRTPTSLRHRIPIAQSCPTTPRK--QR 72
           +  PK        TEE +GE ++AA ED   E C+TPTS  H+IP  QSCPTTPRK  Q 
Sbjct: 16  INLPKLKPSSKIQTEEEAGEEIQAASEDYTNEDCKTPTSSDHKIPKIQSCPTTPRKKGQV 75

Query: 73  VARKRKISDQSFFEATGRGEVESLF---GLFYRVSSS--KRRCTSV 111
              KRK+ +  FFEATGR EVES F      +RV S   K+RC S+
Sbjct: 76  SFHKRKMHEFLFFEATGREEVESFFRSHSELFRVDSHAVKKRCKSL 121

[Close]

BLAST of MELO3C035553.2 vs. TrEMBL
Match: tr|A0A251NNT8|A0A251NNT8_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G114400 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.2e-10
Identity = 41/74 (55.41%), Postives = 48/74 (64.86%), Query Frame = 0


Query: 41  EGESCRTPTSLRHRIPIAQSCPTTPRK--QRVARKRKISDQSFFEATGRGEVESLFGLFY 100
           EG+ CRTPTS  H+IP  QSCPTTPRK  Q    KRK++   FFE TGR EVES F   +
Sbjct: 41  EGDDCRTPTSRDHKIPTIQSCPTTPRKKGQAFVCKRKLAVFDFFERTGREEVESFFRSCF 100

Query: 101 RVSSS--KRRCTSV 111
              S   K+RCTS+
Sbjct: 101 ESPSPRVKKRCTSI 114

[Close]

BLAST of MELO3C035553.2 vs. TrEMBL
Match: tr|M5W3L3|M5W3L3_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa019744mg PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.2e-10
Identity = 41/74 (55.41%), Postives = 48/74 (64.86%), Query Frame = 0


Query: 41  EGESCRTPTSLRHRIPIAQSCPTTPRK--QRVARKRKISDQSFFEATGRGEVESLFGLFY 100
           EG+ CRTPTS  H+IP  QSCPTTPRK  Q    KRK++   FFE TGR EVES F   +
Sbjct: 37  EGDDCRTPTSRDHKIPTIQSCPTTPRKKGQAFVCKRKLAVFDFFERTGREEVESFFRSCF 96

Query: 101 RVSSS--KRRCTSV 111
              S   K+RCTS+
Sbjct: 97  ESPSPRVKKRCTSI 110

The following BLAST results are available for this feature:

BLAST of MELO3C035553.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64869.1	3.1e-33	85.39	hypothetical protein Csa_1G135270 [Cucumis sativus]	[more]
XP_015388774.1	4.4e-11	49.06	cyclin-dependent protein kinase inhibitor SMR2 [Citrus sinensis]	[more]
ESR37663.1	5.7e-11	49.06	hypothetical protein CICLE_v10029845mg [Citrus clementina]	[more]
GAY58700.1	5.7e-11	49.06	hypothetical protein CUMW_188970 [Citrus unshiu]	[more]
XP_006424423.2	5.7e-11	49.06	cyclin-dependent protein kinase inhibitor SMR2 [Citrus clementina]	[more]

BLAST of MELO3C035553.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G08180.1	1.3e-04	47.46	unknown protein	[more]

BLAST of MELO3C035553.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C035553.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LV74\|A0A0A0LV74_CUCSA	2.1e-33	85.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G135270 PE=4 SV=1	[more]
tr\|V4RSW1\|V4RSW1_9ROSI	3.8e-11	49.06	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10029845mg PE=4 ...	[more]
tr\|A0A2H5Q221\|A0A2H5Q221_CITUN	3.8e-11	49.06	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_188970 PE=4 SV=1	[more]
tr\|A0A251NNT8\|A0A251NNT8_PRUPE	4.2e-10	55.41	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G114400 PE=4 SV=1	[more]
tr\|M5W3L3\|M5W3L3_PRUPE	4.2e-10	55.41	Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa019744m...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035553.2.1	MELO3C035553.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..48
None	No IPR available	PANTHER	PTHR33142:SF17	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR2-RELATED	coord: 24..100
None	No IPR available	PANTHER	PTHR33142	FAMILY NOT NAMED	coord: 24..100

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C035553.2	Csa1G135270	Cucumber (Chinese Long) v2	cumedB010
MELO3C035553.2	CSPI01G14050	Wild cucumber (PI 183967)	cpimedB011
MELO3C035553.2	CmaCh12G008100	Cucurbita maxima (Rimu)	cmamedB161
MELO3C035553.2	CmaCh13G002660	Cucurbita maxima (Rimu)	cmamedB215
MELO3C035553.2	CmoCh13G002730	Cucurbita moschata (Rifu)	cmomedB203
MELO3C035553.2	Lsi03G000650	Bottle gourd (USVL1VR-Ls)	lsimedB255
MELO3C035553.2	Cp4.1LG07g06750	Cucurbita pepo (Zucchini)	cpemedB880
MELO3C035553.2	Cp4.1LG20g07400	Cucurbita pepo (Zucchini)	cpemedB563
MELO3C035553.2	CsGy1G014040	Cucumber (Gy14) v2	cgybmedB009
MELO3C035553.2	Cla001050	Watermelon (97103) v1	medwmB165
MELO3C035553.2	ClCG01G013950	Watermelon (Charleston Gray)	medwcgB127
MELO3C035553.2	Cla97C01G012920	Watermelon (97103) v2	medwmbB127
MELO3C035553.2	Bhi08G000110	Wax gourd	medwgoB176
MELO3C035553.2	Carg23699	Silver-seed gourd	carmedB0174
MELO3C035553.2	CsaV3_1G014250	Cucumber (Chinese Long) v3	cucmedB009

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C035553.2	Cucumber (Gy14) v1	cgymedB361
MELO3C035553.2	Cucurbita moschata (Rifu)	cmomedB151
MELO3C035553.2	Watermelon (97103) v1	medwmB158