CmaCh13G002660 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh13G002660
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Cyclin-dependent protein kinase inhibitor Siamese
Location	Cma_Chr13 : 2181555 .. 2181875 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCAATTTCACAAATCCGATCACCAAAAGGTAATAGAACCACCAAAGTCACCGGAAGAAGGTGATCGGAGCAAGGAGGAAGACGGCGGAGAAGCAGTGGATTGTGGTGGAGAGAGCTGCCGAACTCCGACATCTCTCCGACATCGAATTCCCATTGCACGAAGCTGCCCGACAACGCCGAGAAAGCGAAAAATTGTGAGCAAGAGGAAATTTTCAGATGAAAGCTTCTTTGAGGTCGCCGGAAGGGGAGAGGTAGAATCCTTGTTTGCCTTATTTTATAAGGTTTCTTCTGCAAAAAGAAGATTTACAAATATATAA

mRNA sequence

ATGTCTCAATTTCACAAATCCGATCACCAAAAGGTAATAGAACCACCAAAGTCACCGGAAGAAGGTGATCGGAGCAAGGAGGAAGACGGCGGAGAAGCAGTGGATTGTGGTGGAGAGAGCTGCCGAACTCCGACATCTCTCCGACATCGAATTCCCATTGCACGAAGCTGCCCGACAACGCCGAGAAAGCGAAAAATTGTGAGCAAGAGGAAATTTTCAGATGAAAGCTTCTTTGAGGTCGCCGGAAGGGGAGAGGTAGAATCCTTGTTTGCCTTATTTTATAAGGTTTCTTCTGCAAAAAGAAGATTTACAAATATATAA

Coding sequence (CDS)

ATGTCTCAATTTCACAAATCCGATCACCAAAAGGTAATAGAACCACCAAAGTCACCGGAAGAAGGTGATCGGAGCAAGGAGGAAGACGGCGGAGAAGCAGTGGATTGTGGTGGAGAGAGCTGCCGAACTCCGACATCTCTCCGACATCGAATTCCCATTGCACGAAGCTGCCCGACAACGCCGAGAAAGCGAAAAATTGTGAGCAAGAGGAAATTTTCAGATGAAAGCTTCTTTGAGGTCGCCGGAAGGGGAGAGGTAGAATCCTTGTTTGCCTTATTTTATAAGGTTTCTTCTGCAAAAAGAAGATTTACAAATATATAA

Protein sequence

MSQFHKSDHQKVIEPPKSPEEGDRSKEEDGGEAVDCGGESCRTPTSLRHRIPIARSCPTTPRKRKIVSKRKFSDESFFEVAGRGEVESLFALFYKVSSAKRRFTNI

Homology

[Close]

BLAST of CmaCh13G002660 vs. TrEMBL
Match: A0A0A0LV74_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G135270 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.8e-25
Identity = 62/89 (69.66%), Postives = 72/89 (80.90%), Query Frame = 1


Query: 1  MSQFHKSDHQKVIEPPKSPEEGDRSKEEDGGEAVDCG----GESCRTPTSLRHRIPIARS 60
          MSQFHKSD QKV+E P++PE GDRS EE  GEA+       GESCRTPTS +HRIPIA+S
Sbjct: 1  MSQFHKSDQQKVLEAPEAPEHGDRSTEEGRGEALKAAEHDDGESCRTPTSPQHRIPIAQS 60

Query: 61 CPTTPRKRKIVSKRKFSDESFFEVAGRGE 86
          CPTTPRK+++V KRKFSD+SFFE  GRGE
Sbjct: 61 CPTTPRKQRVVRKRKFSDQSFFEATGRGE 89

[Close]

BLAST of CmaCh13G002660 vs. TrEMBL
Match: M5W3L3_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa019744mg PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 7.0e-09
Identity = 46/110 (41.82%), Postives = 63/110 (57.27%), Query Frame = 1


Query: 1   MSQFHKSDHQKVIEPPKSPEEGDRSKEEDGGEAVDCGGESCRTPTSLRHRIPIARSCPTT 60
           +S FH  DHQ+       P +G + K+++    +   G+ CRTPTS  H+IP  +SCPTT
Sbjct: 10  LSIFH--DHQQ-------PPQGLKEKDDNSEPIIRKEGDDCRTPTSRDHKIPTIQSCPTT 69

Query: 61  PRKR--KIVSKRKFSDESFFEVAGRGEVESLFALFYKVSS--AKRRFTNI 107
           PRK+    V KRK +   FFE  GR EVES F   ++  S   K+R T+I
Sbjct: 70  PRKKGQAFVCKRKLAVFDFFERTGREEVESFFRSCFESPSPRVKKRCTSI 110

[Close]

BLAST of CmaCh13G002660 vs. TrEMBL
Match: V4RSW1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029845mg PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.3e-07
Identity = 40/85 (47.06%), Postives = 47/85 (55.29%), Query Frame = 1


Query: 13  IEPPKSPEEGDRSKEEDGGEAV-----DCGGESCRTPTSLRHRIPIARSCPTTPRKRKIV 72
           I  PK         EE+ GE +     D   E C+TPTS  H+IP  +SCPTTPRK+  V
Sbjct: 16  INLPKLKPSSKIQTEEEAGEEIQAASEDYTNEDCKTPTSSDHKIPKIQSCPTTPRKKVQV 75

Query: 73  S--KRKFSDESFFEVAGRGEVESLF 91
           S  KRK  +  FFE  GR EVES F
Sbjct: 76  SFHKRKMHEFLFFEATGREEVESFF 100

[Close]

BLAST of CmaCh13G002660 vs. TrEMBL
Match: A0A067F2H9_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0381851mg PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.3e-07
Identity = 40/85 (47.06%), Postives = 47/85 (55.29%), Query Frame = 1


Query: 13  IEPPKSPEEGDRSKEEDGGEAV-----DCGGESCRTPTSLRHRIPIARSCPTTPRKRKIV 72
           I  PK         EE+ GE +     D   E C+TPTS  H+IP  +SCPTTPRK+  V
Sbjct: 25  INLPKLKPSSKIQTEEEAGEEIQAASEDYTNEDCKTPTSSDHKIPKIQSCPTTPRKKVQV 84

Query: 73  S--KRKFSDESFFEVAGRGEVESLF 91
           S  KRK  +  FFE  GR EVES F
Sbjct: 85  SFHKRKMHEFLFFEATGREEVESFF 109

[Close]

BLAST of CmaCh13G002660 vs. TrEMBL
Match: W9S3U9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011762 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-06
Identity = 43/105 (40.95%), Postives = 55/105 (52.38%), Query Frame = 1


Query: 8   DHQKVIEPPKSPEEGDRS--KEEDGGEAVDCGGESCRTPTSLRHRIPIARSCPTTPRK-- 67
           DH+     PK  +    S  +EE   E  D     C+TPTS   +IP  +SCP TPRK  
Sbjct: 32  DHELEASKPKLEQLSVLSTDREEQKLEYYD----DCKTPTSEDQKIPTTQSCPPTPRKPA 91

Query: 68  --RKIVSKRKFSDESFFEVAGRGEVESLFALFYKVSSAKRRFTNI 107
             R  + KRKFS+  FFE  GR EVES F   +K S  K+R  ++
Sbjct: 92  SDRVFLRKRKFSEFHFFESTGREEVESFFRSTFKFSGLKKRCKSV 132

[Close]

BLAST of CmaCh13G002660 vs. NCBI nr
Match: gi|700209773|gb|KGN64869.1| (hypothetical protein Csa_1G135270 [Cucumis sativus])

HSP 1 Score: 123.2 bits (308), Expect = 2.6e-25
Identity = 62/89 (69.66%), Postives = 72/89 (80.90%), Query Frame = 1


Query: 1  MSQFHKSDHQKVIEPPKSPEEGDRSKEEDGGEAVDCG----GESCRTPTSLRHRIPIARS 60
          MSQFHKSD QKV+E P++PE GDRS EE  GEA+       GESCRTPTS +HRIPIA+S
Sbjct: 1  MSQFHKSDQQKVLEAPEAPEHGDRSTEEGRGEALKAAEHDDGESCRTPTSPQHRIPIAQS 60

Query: 61 CPTTPRKRKIVSKRKFSDESFFEVAGRGE 86
          CPTTPRK+++V KRKFSD+SFFE  GRGE
Sbjct: 61 CPTTPRKQRVVRKRKFSDQSFFEATGRGE 89

[Close]

BLAST of CmaCh13G002660 vs. NCBI nr
Match: gi|595835729|ref|XP_007207110.1| (hypothetical protein PRUPE_ppa019744mg, partial [Prunus persica])

HSP 1 Score: 68.2 bits (165), Expect = 1.0e-08
Identity = 46/110 (41.82%), Postives = 63/110 (57.27%), Query Frame = 1


Query: 1   MSQFHKSDHQKVIEPPKSPEEGDRSKEEDGGEAVDCGGESCRTPTSLRHRIPIARSCPTT 60
           +S FH  DHQ+       P +G + K+++    +   G+ CRTPTS  H+IP  +SCPTT
Sbjct: 10  LSIFH--DHQQ-------PPQGLKEKDDNSEPIIRKEGDDCRTPTSRDHKIPTIQSCPTT 69

Query: 61  PRKR--KIVSKRKFSDESFFEVAGRGEVESLFALFYKVSS--AKRRFTNI 107
           PRK+    V KRK +   FFE  GR EVES F   ++  S   K+R T+I
Sbjct: 70  PRKKGQAFVCKRKLAVFDFFERTGREEVESFFRSCFESPSPRVKKRCTSI 110

[Close]

BLAST of CmaCh13G002660 vs. NCBI nr
Match: gi|985462831|ref|XP_015388774.1| (PREDICTED: cyclin-dependent protein kinase inhibitor SMR2 [Citrus sinensis])

HSP 1 Score: 63.5 bits (153), Expect = 2.5e-07
Identity = 40/85 (47.06%), Postives = 47/85 (55.29%), Query Frame = 1


Query: 13 IEPPKSPEEGDRSKEEDGGEAV-----DCGGESCRTPTSLRHRIPIARSCPTTPRKRKIV 72
          I  PK         EE+ GE +     D   E C+TPTS  H+IP  +SCPTTPRK+  V
Sbjct: 10 INLPKLKPSSKIQTEEEAGEEIQAASEDYTNEDCKTPTSSDHKIPKIQSCPTTPRKKGQV 69

Query: 73 S--KRKFSDESFFEVAGRGEVESLF 91
          S  KRK  +  FFE  GR EVES F
Sbjct: 70 SFHKRKMHEVLFFEATGREEVESFF 94

[Close]

BLAST of CmaCh13G002660 vs. NCBI nr
Match: gi|567863538|ref|XP_006424423.1| (hypothetical protein CICLE_v10029845mg [Citrus clementina])

HSP 1 Score: 63.2 bits (152), Expect = 3.2e-07
Identity = 40/85 (47.06%), Postives = 47/85 (55.29%), Query Frame = 1


Query: 13  IEPPKSPEEGDRSKEEDGGEAV-----DCGGESCRTPTSLRHRIPIARSCPTTPRKRKIV 72
           I  PK         EE+ GE +     D   E C+TPTS  H+IP  +SCPTTPRK+  V
Sbjct: 16  INLPKLKPSSKIQTEEEAGEEIQAASEDYTNEDCKTPTSSDHKIPKIQSCPTTPRKKVQV 75

Query: 73  S--KRKFSDESFFEVAGRGEVESLF 91
           S  KRK  +  FFE  GR EVES F
Sbjct: 76  SFHKRKMHEFLFFEATGREEVESFF 100

[Close]

BLAST of CmaCh13G002660 vs. NCBI nr
Match: gi|641841397|gb|KDO60310.1| (hypothetical protein CISIN_1g0381851mg, partial [Citrus sinensis])

HSP 1 Score: 63.2 bits (152), Expect = 3.2e-07
Identity = 40/85 (47.06%), Postives = 47/85 (55.29%), Query Frame = 1


Query: 13  IEPPKSPEEGDRSKEEDGGEAV-----DCGGESCRTPTSLRHRIPIARSCPTTPRKRKIV 72
           I  PK         EE+ GE +     D   E C+TPTS  H+IP  +SCPTTPRK+  V
Sbjct: 25  INLPKLKPSSKIQTEEEAGEEIQAASEDYTNEDCKTPTSSDHKIPKIQSCPTTPRKKVQV 84

Query: 73  S--KRKFSDESFFEVAGRGEVESLF 91
           S  KRK  +  FFE  GR EVES F
Sbjct: 85  SFHKRKMHEFLFFEATGREEVESFF 109

The following BLAST results are available for this feature:

BLAST of CmaCh13G002660 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh13G002660 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LV74_CUCSA	1.8e-25	69.66	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G135270 PE=4 SV=1	[more]
M5W3L3_PRUPE	7.0e-09	41.82	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa019744mg PE=4 S...	[more]
V4RSW1_9ROSI	2.3e-07	47.06	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029845mg PE=4 SV=1	[more]
A0A067F2H9_CITSI	2.3e-07	47.06	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0381851mg PE=4 ...	[more]
W9S3U9_9ROSA	1.1e-06	40.95	Uncharacterized protein OS=Morus notabilis GN=L484_011762 PE=4 SV=1	[more]

BLAST of CmaCh13G002660 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh13G002660 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209773\|gb\|KGN64869.1\|	2.6e-25	69.66	hypothetical protein Csa_1G135270 [Cucumis sativus]	[more]
gi\|595835729\|ref\|XP_007207110.1\|	1.0e-08	41.82	hypothetical protein PRUPE_ppa019744mg, partial [Prunus persica]	[more]
gi\|985462831\|ref\|XP_015388774.1\|	2.5e-07	47.06	PREDICTED: cyclin-dependent protein kinase inhibitor SMR2 [Citrus sinensis]	[more]
gi\|567863538\|ref\|XP_006424423.1\|	3.2e-07	47.06	hypothetical protein CICLE_v10029845mg [Citrus clementina]	[more]
gi\|641841397\|gb\|KDO60310.1\|	3.2e-07	47.06	hypothetical protein CISIN_1g0381851mg, partial [Citrus sinensis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh13G002660.1	CmaCh13G002660.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh13G002660	Csa1G135270	Cucumber (Chinese Long) v2	cmacuB203
CmaCh13G002660	ClCG01G013950	Watermelon (Charleston Gray)	cmawcgB181
CmaCh13G002660	CSPI01G14050	Wild cucumber (PI 183967)	cmacpiB205
CmaCh13G002660	CmoCh13G002730	Cucurbita moschata (Rifu)	cmacmoB218
CmaCh13G002660	Lsi03G000650	Bottle gourd (USVL1VR-Ls)	cmalsiB212
CmaCh13G002660	Cp4.1LG07g06750	Cucurbita pepo (Zucchini)	cmacpeB251
CmaCh13G002660	Cp4.1LG20g07400	Cucurbita pepo (Zucchini)	cmacpeB236
CmaCh13G002660	MELO3C035553.2	Melon (DHL92) v3.6.1	cmamedB215
CmaCh13G002660	CsaV3_1G014250	Cucumber (Chinese Long) v3	cmacucB0234
CmaCh13G002660	Cla97C01G012920	Watermelon (97103) v2	cmawmbB209
CmaCh13G002660	Bhi08G000110	Wax gourd	cmawgoB0267
CmaCh13G002660	CsGy1G014040	Cucumber (Gy14) v2	cgybcmaB061
CmaCh13G002660	Carg23699	Silver-seed gourd	carcmaB0223

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh13G002660	CmaCh12G008100	Cucurbita maxima (Rimu)	cmacmaB174

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh13G002660	Cucurbita maxima (Rimu)	cmacmaB230
CmaCh13G002660	Cucumber (Gy14) v1	cgycmaB0594
CmaCh13G002660	Cucurbita moschata (Rifu)	cmacmoB217
CmaCh13G002660	Cucurbita moschata (Rifu)	cmacmoB234
CmaCh13G002660	Melon (DHL92) v3.5.1	cmameB194
CmaCh13G002660	Watermelon (Charleston Gray)	cmawcgB191
CmaCh13G002660	Watermelon (Charleston Gray)	cmawcgB204
CmaCh13G002660	Watermelon (97103) v1	cmawmB204
CmaCh13G002660	Watermelon (97103) v1	cmawmB210
CmaCh13G002660	Cucurbita pepo (Zucchini)	cmacpeB224
CmaCh13G002660	Silver-seed gourd	carcmaB0467