Lsi03G000650 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi03G000650
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr03 : 930571 .. 930919 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCAATTTCCCAAATCCGATCACCAAAAGGAATTAGAAACCCCAAAGTCATTGGAAGAAGGCGATCGGAGTAAGGAGGAAGGCGGCGAAGAAGCGCTTCCGGTGGCGAAGGATGGTGATGGAGAGAGCTGTCGAACTCCGACATCTCTACGACATCGAATTCCGACTGCACGAAGCTGCCCGACGATGCCGAGAAAGCGGAAAGTTGTGAGTAAGAGGAAATTTTCAGACCAAAGCTTCTTTGAGGCCACCGGAAGGGGAGAGGTAGAATCCTTGTTTGGCTTATTTTATAGGGTTTCTTCTTCTAAAAGAAGATGTACAAGTGTATAAAACCCTAGCTACTTAG

mRNA sequence

ATGTCTCAATTTCCCAAATCCGATCACCAAAAGGAATTAGAAACCCCAAAGTCATTGGAAGAAGGCGATCGGAGTAAGGAGGAAGGCGGCGAAGAAGCGCTTCCGGTGGCGAAGGATGGTGATGGAGAGAGCTGTCGAACTCCGACATCTCTACGACATCGAATTCCGACTGCACGAAGCTGCCCGACGATGCCGAGAAAGCGGAAAGTTGTGAGGTTTCTTCTTCTAAAAGAAGATGTACAAGTGTATAAAACCCTAGCTACTTAG

Coding sequence (CDS)

ATGTCTCAATTTCCCAAATCCGATCACCAAAAGGAATTAGAAACCCCAAAGTCATTGGAAGAAGGCGATCGGAGTAAGGAGGAAGGCGGCGAAGAAGCGCTTCCGGTGGCGAAGGATGGTGATGGAGAGAGCTGTCGAACTCCGACATCTCTACGACATCGAATTCCGACTGCACGAAGCTGCCCGACGATGCCGAGAAAGCGGAAAGTTGTGAGGTTTCTTCTTCTAAAAGAAGATGTACAAGTGTATAAAACCCTAGCTACTTAG

Protein sequence

MSQFPKSDHQKELETPKSLEEGDRSKEEGGEEALPVAKDGDGESCRTPTSLRHRIPTARSCPTMPRKRKVVRFLLLKEDVQVYKTLAT
Homology
[Close]
BLAST of Lsi03G000650 vs. TrEMBL
Match: A0A0A0LV74_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G135270 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 6.4e-16
Identity = 49/72 (68.06%), Postives = 56/72 (77.78%), Query Frame = 1 

Query: 1  MSQFPKSDHQKELETPKSLEEGDRSKEEGGEEALPVAKDGDGESCRTPTSLRHRIPTARS 60
          MSQF KSD QK LE P++ E GDRS EEG  EAL  A+  DGESCRTPTS +HRIP A+S
Sbjct: 1  MSQFHKSDQQKVLEAPEAPEHGDRSTEEGRGEALKAAEHDDGESCRTPTSPQHRIPIAQS 60

Query: 61 CPTMPRKRKVVR 73
          CPT PRK++VVR
Sbjct: 61 CPTTPRKQRVVR 72

[Close]
BLAST of Lsi03G000650 vs. NCBI nr
Match: gi|700209773|gb|KGN64869.1| (hypothetical protein Csa_1G135270 [Cucumis sativus])

HSP 1 Score: 91.3 bits (225), Expect = 9.2e-16
Identity = 49/72 (68.06%), Postives = 56/72 (77.78%), Query Frame = 1 

Query: 1  MSQFPKSDHQKELETPKSLEEGDRSKEEGGEEALPVAKDGDGESCRTPTSLRHRIPTARS 60
          MSQF KSD QK LE P++ E GDRS EEG  EAL  A+  DGESCRTPTS +HRIP A+S
Sbjct: 1  MSQFHKSDQQKVLEAPEAPEHGDRSTEEGRGEALKAAEHDDGESCRTPTSPQHRIPIAQS 60

Query: 61 CPTMPRKRKVVR 73
          CPT PRK++VVR
Sbjct: 61 CPTTPRKQRVVR 72

The following BLAST results are available for this feature:
BLAST of Lsi03G000650 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi03G000650 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LV74_CUCSA6.4e-1668.06Uncharacterized protein OS=Cucumis sativus GN=Csa_1G135270 PE=4 SV=1[more]
BLAST of Lsi03G000650 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi03G000650 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209773|gb|KGN64869.1|9.2e-1668.06hypothetical protein Csa_1G135270 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G000650.1Lsi03G000650.1mRNA