Cla001050 (gene) Watermelon (97103) v1

Overview
NameCla001050
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr1 : 11619713 .. 11620045 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCATTTTCACAAATCCGATCACCAAAAGGTATTAGAAACCTCAAAGCCACTGGAAGAAGGTGATCGGAGCAAGGAGGAAGACGGCGATGAAGCGCTTCCGGCGGCAGCGGATGGTGACGAAGAGAGCTGTCGAACTCCGACATCTCTTCGACATCGAATTCCGACAGCACGAAGCTGCCCGACGACGCCGAGAAAGCGGAAAGTCGTGAGCAAGAGGAAATTTTCAGACCAAAGCTTCTTTGAGGCCACCGGAAGGGGAGAGGTAGAATCCTTGTTTGGCTTATTTTATAGGGTTTCCTCTTCCAAACGAAGATGTACAAGTGTATAA

mRNA sequence

ATGTCTCATTTTCACAAATCCGATCACCAAAAGGTATTAGAAACCTCAAAGCCACTGGAAGAAGGTGATCGGAGCAAGGAGGAAGACGGCGATGAAGCGCTTCCGGCGGCAGCGGATGGTGACGAAGAGAGCTGTCGAACTCCGACATCTCTTCGACATCGAATTCCGACAGCACGAAGCTGCCCGACGACGCCGAGAAAGCGGAAAGTCGTGAGCAAGAGGAAATTTTCAGACCAAAGCTTCTTTGAGGCCACCGGAAGGGGAGAGGTAGAATCCTTGTTTGGCTTATTTTATAGGGTTTCCTCTTCCAAACGAAGATGTACAAGTGTATAA

Coding sequence (CDS)

ATGTCTCATTTTCACAAATCCGATCACCAAAAGGTATTAGAAACCTCAAAGCCACTGGAAGAAGGTGATCGGAGCAAGGAGGAAGACGGCGATGAAGCGCTTCCGGCGGCAGCGGATGGTGACGAAGAGAGCTGTCGAACTCCGACATCTCTTCGACATCGAATTCCGACAGCACGAAGCTGCCCGACGACGCCGAGAAAGCGGAAAGTCGTGAGCAAGAGGAAATTTTCAGACCAAAGCTTCTTTGAGGCCACCGGAAGGGGAGAGGTAGAATCCTTGTTTGGCTTATTTTATAGGGTTTCCTCTTCCAAACGAAGATGTACAAGTGTATAA

Protein sequence

MSHFHKSDHQKVLETSKPLEEGDRSKEEDGDEALPAAADGDEESCRTPTSLRHRIPTARSCPTTPRKRKVVSKRKFSDQSFFEATGRGEVESLFGLFYRVSSSKRRCTSV
Homology
[Close]
BLAST of Cla001050 vs. Swiss-Prot
Match: SMR2_ARATH (Cyclin-dependent protein kinase inhibitor SMR2 OS=Arabidopsis thaliana GN=SMR2 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.3e-06
Identity = 37/91 (40.66%), Postives = 47/91 (51.65%), Query Frame = 1 

Query: 11 KVLETSKPLEEGDRSKEEDGDEALPAAADGDEESCRTPTSLRHRIPTARSCPTTPRKR-- 70
          + LE  K +E+  RS+EE+  +      +  E  C TPTS  H+IP   +CP  PRKR  
Sbjct: 6  ETLEEEKTVEQKPRSQEEEDHQDSSKKEELLESLC-TPTSSDHKIPEVETCPPPPRKRPR 65

Query: 71 --KVVSKRKFS-DQSFFEAT--GRGEVESLF 95
             +  K + S D  FFEAT  G  EVE+LF
Sbjct: 66 EISLTKKTRLSKDLRFFEATDVGSQEVETLF 95

[Close]
BLAST of Cla001050 vs. TrEMBL
Match: A0A0A0LV74_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G135270 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.7e-27
Identity = 65/89 (73.03%), Postives = 70/89 (78.65%), Query Frame = 1 

Query: 1  MSHFHKSDHQKVLETSKPLEEGDRSKEEDGDEALPAAADGDEESCRTPTSLRHRIPTARS 60
          MS FHKSD QKVLE  +  E GDRS EE   EAL AA   D ESCRTPTS +HRIP A+S
Sbjct: 1  MSQFHKSDQQKVLEAPEAPEHGDRSTEEGRGEALKAAEHDDGESCRTPTSPQHRIPIAQS 60

Query: 61 CPTTPRKRKVVSKRKFSDQSFFEATGRGE 90
          CPTTPRK++VV KRKFSDQSFFEATGRGE
Sbjct: 61 CPTTPRKQRVVRKRKFSDQSFFEATGRGE 89

[Close]
BLAST of Cla001050 vs. TrEMBL
Match: V4RSW1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029845mg PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 8.3e-13
Identity = 47/94 (50.00%), Postives = 60/94 (63.83%), Query Frame = 1 

Query: 24  RSKEEDGDEALPAAADGDEESCRTPTSLRHRIPTARSCPTTPRKRKVVS--KRKFSDQSF 83
           +++EE G+E   A+ D   E C+TPTS  H+IP  +SCPTTPRK+  VS  KRK  +  F
Sbjct: 28  QTEEEAGEEIQAASEDYTNEDCKTPTSSDHKIPKIQSCPTTPRKKVQVSFHKRKMHEFLF 87

Query: 84  FEATGRGEVESLF---GLFYRVSSS--KRRCTSV 111
           FEATGR EVES F      +RV S   K+RC S+
Sbjct: 88  FEATGREEVESFFRSNSELFRVGSHAVKKRCKSL 121

[Close]
BLAST of Cla001050 vs. TrEMBL
Match: W9S3U9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011762 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 9.2e-12
Identity = 50/113 (44.25%), Postives = 61/113 (53.98%), Query Frame = 1 

Query: 5   HKSDHQKV---LETSKPLEEGDRSKEEDGDEALPAAADGDEESCRTPTSLRHRIPTARSC 64
           H  DH  +   LE SKP  E       D +E      D     C+TPTS   +IPT +SC
Sbjct: 24  HHDDHVPLDHELEASKPKLEQLSVLSTDREEQKLEYYD----DCKTPTSEDQKIPTTQSC 83

Query: 65  PTTPRK----RKVVSKRKFSDQSFFEATGRGEVESLFGLFYRVSSSKRRCTSV 111
           P TPRK    R  + KRKFS+  FFE+TGR EVES F   ++ S  K+RC SV
Sbjct: 84  PPTPRKPASDRVFLRKRKFSEFHFFESTGREEVESFFRSTFKFSGLKKRCKSV 132

[Close]
BLAST of Cla001050 vs. TrEMBL
Match: A0A067F2H9_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0381851mg PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.2e-11
Identity = 40/73 (54.79%), Postives = 50/73 (68.49%), Query Frame = 1 

Query: 24  RSKEEDGDEALPAAADGDEESCRTPTSLRHRIPTARSCPTTPRKRKVVS--KRKFSDQSF 83
           +++EE G+E   A+ D   E C+TPTS  H+IP  +SCPTTPRK+  VS  KRK  +  F
Sbjct: 37  QTEEEAGEEIQAASEDYTNEDCKTPTSSDHKIPKIQSCPTTPRKKVQVSFHKRKMHEFLF 96

Query: 84  FEATGRGEVESLF 95
           FEATGR EVES F
Sbjct: 97  FEATGREEVESFF 109

[Close]
BLAST of Cla001050 vs. TrEMBL
Match: M5W3L3_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa019744mg PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.2e-11
Identity = 48/109 (44.04%), Postives = 63/109 (57.80%), Query Frame = 1 

Query: 7   SDHQKVLETSKPLEEGDRSKEEDGDEALPAAA-DGDEESCRTPTSLRHRIPTARSCPTTP 66
           SD  +VL      ++  +  +E  D + P    +GD+  CRTPTS  H+IPT +SCPTTP
Sbjct: 4   SDQHQVLSIFHDHQQPPQGLKEKDDNSEPIIRKEGDD--CRTPTSRDHKIPTIQSCPTTP 63

Query: 67  RKR--KVVSKRKFSDQSFFEATGRGEVESLFGLFYRVSSS--KRRCTSV 111
           RK+    V KRK +   FFE TGR EVES F   +   S   K+RCTS+
Sbjct: 64  RKKGQAFVCKRKLAVFDFFERTGREEVESFFRSCFESPSPRVKKRCTSI 110

[Close]
BLAST of Cla001050 vs. TAIR10
Match: AT1G08180.1 (AT1G08180.1 unknown protein)

HSP 1 Score: 53.9 bits (128), Expect = 7.2e-08
Identity = 37/91 (40.66%), Postives = 47/91 (51.65%), Query Frame = 1 

Query: 11 KVLETSKPLEEGDRSKEEDGDEALPAAADGDEESCRTPTSLRHRIPTARSCPTTPRKR-- 70
          + LE  K +E+  RS+EE+  +      +  E  C TPTS  H+IP   +CP  PRKR  
Sbjct: 6  ETLEEEKTVEQKPRSQEEEDHQDSSKKEELLESLC-TPTSSDHKIPEVETCPPPPRKRPR 65

Query: 71 --KVVSKRKFS-DQSFFEAT--GRGEVESLF 95
             +  K + S D  FFEAT  G  EVE+LF
Sbjct: 66 EISLTKKTRLSKDLRFFEATDVGSQEVETLF 95

[Close]
BLAST of Cla001050 vs. NCBI nr
Match: gi|700209773|gb|KGN64869.1| (hypothetical protein Csa_1G135270 [Cucumis sativus])

HSP 1 Score: 129.4 bits (324), Expect = 3.8e-27
Identity = 65/89 (73.03%), Postives = 70/89 (78.65%), Query Frame = 1 

Query: 1  MSHFHKSDHQKVLETSKPLEEGDRSKEEDGDEALPAAADGDEESCRTPTSLRHRIPTARS 60
          MS FHKSD QKVLE  +  E GDRS EE   EAL AA   D ESCRTPTS +HRIP A+S
Sbjct: 1  MSQFHKSDQQKVLEAPEAPEHGDRSTEEGRGEALKAAEHDDGESCRTPTSPQHRIPIAQS 60

Query: 61 CPTTPRKRKVVSKRKFSDQSFFEATGRGE 90
          CPTTPRK++VV KRKFSDQSFFEATGRGE
Sbjct: 61 CPTTPRKQRVVRKRKFSDQSFFEATGRGE 89

[Close]
BLAST of Cla001050 vs. NCBI nr
Match: gi|985462831|ref|XP_015388774.1| (PREDICTED: cyclin-dependent protein kinase inhibitor SMR2 [Citrus sinensis])

HSP 1 Score: 81.6 bits (200), Expect = 9.1e-13
Identity = 47/94 (50.00%), Postives = 60/94 (63.83%), Query Frame = 1 

Query: 24  RSKEEDGDEALPAAADGDEESCRTPTSLRHRIPTARSCPTTPRKRKVVS--KRKFSDQSF 83
           +++EE G+E   A+ D   E C+TPTS  H+IP  +SCPTTPRK+  VS  KRK  +  F
Sbjct: 22  QTEEEAGEEIQAASEDYTNEDCKTPTSSDHKIPKIQSCPTTPRKKGQVSFHKRKMHEVLF 81

Query: 84  FEATGRGEVESLF---GLFYRVSSS--KRRCTSV 111
           FEATGR EVES F      +RV S   K+RC S+
Sbjct: 82  FEATGREEVESFFRSHSELFRVDSHAVKKRCKSL 115

[Close]
BLAST of Cla001050 vs. NCBI nr
Match: gi|567863538|ref|XP_006424423.1| (hypothetical protein CICLE_v10029845mg [Citrus clementina])

HSP 1 Score: 81.3 bits (199), Expect = 1.2e-12
Identity = 47/94 (50.00%), Postives = 60/94 (63.83%), Query Frame = 1 

Query: 24  RSKEEDGDEALPAAADGDEESCRTPTSLRHRIPTARSCPTTPRKRKVVS--KRKFSDQSF 83
           +++EE G+E   A+ D   E C+TPTS  H+IP  +SCPTTPRK+  VS  KRK  +  F
Sbjct: 28  QTEEEAGEEIQAASEDYTNEDCKTPTSSDHKIPKIQSCPTTPRKKVQVSFHKRKMHEFLF 87

Query: 84  FEATGRGEVESLF---GLFYRVSSS--KRRCTSV 111
           FEATGR EVES F      +RV S   K+RC S+
Sbjct: 88  FEATGREEVESFFRSNSELFRVGSHAVKKRCKSL 121

[Close]
BLAST of Cla001050 vs. NCBI nr
Match: gi|1009114067|ref|XP_015873484.1| (PREDICTED: cyclin-dependent protein kinase inhibitor SMR2 [Ziziphus jujuba])

HSP 1 Score: 80.1 bits (196), Expect = 2.7e-12
Identity = 52/125 (41.60%), Postives = 69/125 (55.20%), Query Frame = 1 

Query: 1   MSHFHKSDHQKVLETSKPLEEGDRSKEEDGD---EALPAAADGD------EESCRTPTSL 60
           MS  H S+ Q+ L   +P    D+ ++ D D   + L    D D      E+ C TPTS 
Sbjct: 1   MSKDHISEQQQNLSKIQPAGLDDKREDHDHDHDVQPLKQLLDHDDHHDHQEDPCLTPTSS 60

Query: 61  RHRIPTARSCPTTPRKRK----VVSKRKFSDQSFFEATGRGEVESLFGLFYRVSSS--KR 111
            HR+P+ RSCP+TPRK +     + KRK SD  FFEAT R EVES F   +  SS+  K+
Sbjct: 61  DHRLPSTRSCPSTPRKPQGRLVYLHKRKLSDLHFFEATRREEVESFFRSNFEFSSARVKK 120

[Close]
BLAST of Cla001050 vs. NCBI nr
Match: gi|703150667|ref|XP_010109920.1| (hypothetical protein L484_011762 [Morus notabilis])

HSP 1 Score: 77.8 bits (190), Expect = 1.3e-11
Identity = 50/113 (44.25%), Postives = 61/113 (53.98%), Query Frame = 1 

Query: 5   HKSDHQKV---LETSKPLEEGDRSKEEDGDEALPAAADGDEESCRTPTSLRHRIPTARSC 64
           H  DH  +   LE SKP  E       D +E      D     C+TPTS   +IPT +SC
Sbjct: 24  HHDDHVPLDHELEASKPKLEQLSVLSTDREEQKLEYYD----DCKTPTSEDQKIPTTQSC 83

Query: 65  PTTPRK----RKVVSKRKFSDQSFFEATGRGEVESLFGLFYRVSSSKRRCTSV 111
           P TPRK    R  + KRKFS+  FFE+TGR EVES F   ++ S  K+RC SV
Sbjct: 84  PPTPRKPASDRVFLRKRKFSEFHFFESTGREEVESFFRSTFKFSGLKKRCKSV 132

The following BLAST results are available for this feature:
BLAST of Cla001050 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SMR2_ARATH1.3e-0640.66Cyclin-dependent protein kinase inhibitor SMR2 OS=Arabidopsis thaliana GN=SMR2 P... [more]
BLAST of Cla001050 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LV74_CUCSA2.7e-2773.03Uncharacterized protein OS=Cucumis sativus GN=Csa_1G135270 PE=4 SV=1[more]
V4RSW1_9ROSI8.3e-1350.00Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029845mg PE=4 SV=1[more]
W9S3U9_9ROSA9.2e-1244.25Uncharacterized protein OS=Morus notabilis GN=L484_011762 PE=4 SV=1[more]
A0A067F2H9_CITSI1.2e-1154.79Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0381851mg PE=4 ... [more]
M5W3L3_PRUPE1.2e-1144.04Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa019744mg PE=4 S... [more]
BLAST of Cla001050 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G08180.17.2e-0840.66 unknown protein[more]
BLAST of Cla001050 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209773|gb|KGN64869.1|3.8e-2773.03hypothetical protein Csa_1G135270 [Cucumis sativus][more]
gi|985462831|ref|XP_015388774.1|9.1e-1350.00PREDICTED: cyclin-dependent protein kinase inhibitor SMR2 [Citrus sinensis][more]
gi|567863538|ref|XP_006424423.1|1.2e-1250.00hypothetical protein CICLE_v10029845mg [Citrus clementina][more]
gi|1009114067|ref|XP_015873484.1|2.7e-1241.60PREDICTED: cyclin-dependent protein kinase inhibitor SMR2 [Ziziphus jujuba][more]
gi|703150667|ref|XP_010109920.1|1.3e-1144.25hypothetical protein L484_011762 [Morus notabilis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0016310 phosphorylation
biological_process GO:0045839 negative regulation of mitotic nuclear division
biological_process GO:0032875 regulation of DNA endoreduplication
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
molecular_function GO:0016301 kinase activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU40347watermelon EST collection version 2.0transcribed_cluster
WMU55521watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla001050Cla001050.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU40347WMU40347transcribed_cluster
WMU55521WMU55521transcribed_cluster