Csa1G135270 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G135270
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 9521827 .. 9522446 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCAATTTCACAAATCCGATCAACAGAAGGTCTTAGAAGCCCCGGAGGCACCGGAACATGGTGATCGAAGCACGGAGGAAGGTAGAGGAGAAGCACTTAAAGCAGCTGAGCATGATGACGGAGAGAGCTGTCGAACACCGACGTCACCCCAGCATCGAATTCCGATCGCACAAAGCTGCCCGACGACACCAAGAAAACAGAGAGTTGTGAGGAAGAGGAAATTTTCTGACCAAAGCTTCTTTGAAGCCACCGGAAGAGGAGAGGTAGAATCCTTGTTTGGCTTATTTTATAGGGTTTCTTCTTCTAAAAGAAGGTGTACAAGTGTATAAAACCCTAGAGTGTTTGTATATTTATATATATATATATATAGATATATACACGGTTAAATTATAAGTTTGATCTTTAAATTTACAACGTCTATCTATTTAACGTTCATATTTAATCAATTATATTCTAATAAAATTCTAAATTTCATTTTATAACTATCTCATTTTTGTTCTTAGTTTTAAAATTTTGGTCTATAAACAAAACCTTTCTGCTTTGGTATTTCTTCTTTTGTTTTCTACTCTATTTTACCAAATGTTTTAAAAATGAATTCACTTTTTTTCAGTTTTAA

mRNA sequence

ATGTCTCAATTTCACAAATCCGATCAACAGAAGGTCTTAGAAGCCCCGGAGGCACCGGAACATGGTGATCGAAGCACGGAGGAAGGTAGAGGAGAAGCACTTAAAGCAGCTGAGCATGATGACGGAGAGAGCTGTCGAACACCGACGTCACCCCAGCATCGAATTCCGATCGCACAAAGCTGCCCGACGACACCAAGAAAACAGAGAGTTGTGAGGAAGAGGAAATTTTCTGACCAAAGCTTCTTTGAAGCCACCGGAAGAGGAGAGTTTTAA

Coding sequence (CDS)

ATGTCTCAATTTCACAAATCCGATCAACAGAAGGTCTTAGAAGCCCCGGAGGCACCGGAACATGGTGATCGAAGCACGGAGGAAGGTAGAGGAGAAGCACTTAAAGCAGCTGAGCATGATGACGGAGAGAGCTGTCGAACACCGACGTCACCCCAGCATCGAATTCCGATCGCACAAAGCTGCCCGACGACACCAAGAAAACAGAGAGTTGTGAGGAAGAGGAAATTTTCTGACCAAAGCTTCTTTGAAGCCACCGGAAGAGGAGAGTTTTAA

Protein sequence

MSQFHKSDQQKVLEAPEAPEHGDRSTEEGRGEALKAAEHDDGESCRTPTSPQHRIPIAQSCPTTPRKQRVVRKRKFSDQSFFEATGRGEF*

Homology

[Close]

BLAST of Csa1G135270 vs. TrEMBL
Match: A0A0A0LV74_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G135270 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 3.1e-45
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1


Query: 1  MSQFHKSDQQKVLEAPEAPEHGDRSTEEGRGEALKAAEHDDGESCRTPTSPQHRIPIAQS 60
          MSQFHKSDQQKVLEAPEAPEHGDRSTEEGRGEALKAAEHDDGESCRTPTSPQHRIPIAQS
Sbjct: 1  MSQFHKSDQQKVLEAPEAPEHGDRSTEEGRGEALKAAEHDDGESCRTPTSPQHRIPIAQS 60

Query: 61 CPTTPRKQRVVRKRKFSDQSFFEATGRGEF 91
          CPTTPRKQRVVRKRKFSDQSFFEATGRGEF
Sbjct: 61 CPTTPRKQRVVRKRKFSDQSFFEATGRGEF 90

[Close]

BLAST of Csa1G135270 vs. TrEMBL
Match: V4RSW1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029845mg PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.6e-09
Identity = 39/80 (48.75%), Postives = 47/80 (58.75%), Query Frame = 1


Query: 13 LEAPEAPEHGDRSTEEGRGEALKAAEHD-DGESCRTPTSPQHRIPIAQSCPTTPRKQRVV 72
          +  P+        TEE  GE ++AA  D   E C+TPTS  H+IP  QSCPTTPRK+  V
Sbjct: 16 INLPKLKPSSKIQTEEEAGEEIQAASEDYTNEDCKTPTSSDHKIPKIQSCPTTPRKKVQV 75

Query: 73 --RKRKFSDQSFFEATGRGE 90
             KRK  +  FFEATGR E
Sbjct: 76 SFHKRKMHEFLFFEATGREE 95

[Close]

BLAST of Csa1G135270 vs. TrEMBL
Match: A0A067F2H9_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0381851mg PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.6e-09
Identity = 39/80 (48.75%), Postives = 47/80 (58.75%), Query Frame = 1


Query: 13  LEAPEAPEHGDRSTEEGRGEALKAAEHD-DGESCRTPTSPQHRIPIAQSCPTTPRKQRVV 72
           +  P+        TEE  GE ++AA  D   E C+TPTS  H+IP  QSCPTTPRK+  V
Sbjct: 25  INLPKLKPSSKIQTEEEAGEEIQAASEDYTNEDCKTPTSSDHKIPKIQSCPTTPRKKVQV 84

Query: 73  --RKRKFSDQSFFEATGRGE 90
              KRK  +  FFEATGR E
Sbjct: 85  SFHKRKMHEFLFFEATGREE 104

[Close]

BLAST of Csa1G135270 vs. TrEMBL
Match: M5W3L3_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa019744mg PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.1e-07
Identity = 38/88 (43.18%), Postives = 49/88 (55.68%), Query Frame = 1


Query: 7  SDQQKVLEA---PEAPEHGDRSTEEGRGEALKAAEHDDGESCRTPTSPQHRIPIAQSCPT 66
          SDQ +VL      + P  G +  ++     ++     +G+ CRTPTS  H+IP  QSCPT
Sbjct: 4  SDQHQVLSIFHDHQQPPQGLKEKDDNSEPIIR----KEGDDCRTPTSRDHKIPTIQSCPT 63

Query: 67 TPRK--QRVVRKRKFSDQSFFEATGRGE 90
          TPRK  Q  V KRK +   FFE TGR E
Sbjct: 64 TPRKKGQAFVCKRKLAVFDFFERTGREE 87

[Close]

BLAST of Csa1G135270 vs. TrEMBL
Match: A0A0D2N8G9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G117700 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.3e-07
Identity = 34/86 (39.53%), Postives = 47/86 (54.65%), Query Frame = 1


Query: 6   KSDQQKVLEAPEAPEHGDRSTEEGRGEALKAA-----EHDDGESCRTPTSPQHRIPIAQS 65
           K  Q+K  E  E  E G    ++   E    +     + D+GE C+TP+S  H+ P  QS
Sbjct: 18  KQQQRKQDEEDEEKEKGIGKDDDDEEEVTVTSRKLDDDEDEGEECKTPSSRDHKTPAIQS 77

Query: 66  CPTTPRKQRVVR-KRKFSDQSFFEAT 86
           CP TPRK+ ++R KRK S+  FFE T
Sbjct: 78  CPLTPRKKPMMRMKRKVSELQFFETT 103

[Close]

BLAST of Csa1G135270 vs. NCBI nr
Match: gi|700209773|gb|KGN64869.1| (hypothetical protein Csa_1G135270 [Cucumis sativus])

HSP 1 Score: 188.7 bits (478), Expect = 4.4e-45
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1


Query: 1  MSQFHKSDQQKVLEAPEAPEHGDRSTEEGRGEALKAAEHDDGESCRTPTSPQHRIPIAQS 60
          MSQFHKSDQQKVLEAPEAPEHGDRSTEEGRGEALKAAEHDDGESCRTPTSPQHRIPIAQS
Sbjct: 1  MSQFHKSDQQKVLEAPEAPEHGDRSTEEGRGEALKAAEHDDGESCRTPTSPQHRIPIAQS 60

Query: 61 CPTTPRKQRVVRKRKFSDQSFFEATGRGEF 91
          CPTTPRKQRVVRKRKFSDQSFFEATGRGEF
Sbjct: 61 CPTTPRKQRVVRKRKFSDQSFFEATGRGEF 90

[Close]

BLAST of Csa1G135270 vs. NCBI nr
Match: gi|985462831|ref|XP_015388774.1| (PREDICTED: cyclin-dependent protein kinase inhibitor SMR2 [Citrus sinensis])

HSP 1 Score: 70.9 bits (172), Expect = 1.3e-09
Identity = 39/80 (48.75%), Postives = 47/80 (58.75%), Query Frame = 1


Query: 13 LEAPEAPEHGDRSTEEGRGEALKAAEHD-DGESCRTPTSPQHRIPIAQSCPTTPRKQRVV 72
          +  P+        TEE  GE ++AA  D   E C+TPTS  H+IP  QSCPTTPRK+  V
Sbjct: 10 INLPKLKPSSKIQTEEEAGEEIQAASEDYTNEDCKTPTSSDHKIPKIQSCPTTPRKKGQV 69

Query: 73 --RKRKFSDQSFFEATGRGE 90
             KRK  +  FFEATGR E
Sbjct: 70 SFHKRKMHEVLFFEATGREE 89

[Close]

BLAST of Csa1G135270 vs. NCBI nr
Match: gi|641841397|gb|KDO60310.1| (hypothetical protein CISIN_1g0381851mg, partial [Citrus sinensis])

HSP 1 Score: 70.1 bits (170), Expect = 2.3e-09
Identity = 39/80 (48.75%), Postives = 47/80 (58.75%), Query Frame = 1


Query: 13  LEAPEAPEHGDRSTEEGRGEALKAAEHD-DGESCRTPTSPQHRIPIAQSCPTTPRKQRVV 72
           +  P+        TEE  GE ++AA  D   E C+TPTS  H+IP  QSCPTTPRK+  V
Sbjct: 25  INLPKLKPSSKIQTEEEAGEEIQAASEDYTNEDCKTPTSSDHKIPKIQSCPTTPRKKVQV 84

Query: 73  --RKRKFSDQSFFEATGRGE 90
              KRK  +  FFEATGR E
Sbjct: 85  SFHKRKMHEFLFFEATGREE 104

[Close]

BLAST of Csa1G135270 vs. NCBI nr
Match: gi|567863538|ref|XP_006424423.1| (hypothetical protein CICLE_v10029845mg [Citrus clementina])

HSP 1 Score: 70.1 bits (170), Expect = 2.3e-09
Identity = 39/80 (48.75%), Postives = 47/80 (58.75%), Query Frame = 1


Query: 13 LEAPEAPEHGDRSTEEGRGEALKAAEHD-DGESCRTPTSPQHRIPIAQSCPTTPRKQRVV 72
          +  P+        TEE  GE ++AA  D   E C+TPTS  H+IP  QSCPTTPRK+  V
Sbjct: 16 INLPKLKPSSKIQTEEEAGEEIQAASEDYTNEDCKTPTSSDHKIPKIQSCPTTPRKKVQV 75

Query: 73 --RKRKFSDQSFFEATGRGE 90
             KRK  +  FFEATGR E
Sbjct: 76 SFHKRKMHEFLFFEATGREE 95

[Close]

BLAST of Csa1G135270 vs. NCBI nr
Match: gi|595835729|ref|XP_007207110.1| (hypothetical protein PRUPE_ppa019744mg, partial [Prunus persica])

HSP 1 Score: 63.9 bits (154), Expect = 1.6e-07
Identity = 38/88 (43.18%), Postives = 49/88 (55.68%), Query Frame = 1


Query: 7  SDQQKVLEA---PEAPEHGDRSTEEGRGEALKAAEHDDGESCRTPTSPQHRIPIAQSCPT 66
          SDQ +VL      + P  G +  ++     ++     +G+ CRTPTS  H+IP  QSCPT
Sbjct: 4  SDQHQVLSIFHDHQQPPQGLKEKDDNSEPIIR----KEGDDCRTPTSRDHKIPTIQSCPT 63

Query: 67 TPRK--QRVVRKRKFSDQSFFEATGRGE 90
          TPRK  Q  V KRK +   FFE TGR E
Sbjct: 64 TPRKKGQAFVCKRKLAVFDFFERTGREE 87

The following BLAST results are available for this feature:

BLAST of Csa1G135270 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LV74_CUCSA	3.1e-45	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G135270 PE=4 SV=1	[more]
V4RSW1_9ROSI	1.6e-09	48.75	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029845mg PE=4 SV=1	[more]
A0A067F2H9_CITSI	1.6e-09	48.75	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0381851mg PE=4 ...	[more]
M5W3L3_PRUPE	1.1e-07	43.18	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa019744mg PE=4 S...	[more]
A0A0D2N8G9_GOSRA	4.3e-07	39.53	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G117700 PE=4 SV=1	[more]

BLAST of Csa1G135270 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209773\|gb\|KGN64869.1\|	4.4e-45	100.00	hypothetical protein Csa_1G135270 [Cucumis sativus]	[more]
gi\|985462831\|ref\|XP_015388774.1\|	1.3e-09	48.75	PREDICTED: cyclin-dependent protein kinase inhibitor SMR2 [Citrus sinensis]	[more]
gi\|641841397\|gb\|KDO60310.1\|	2.3e-09	48.75	hypothetical protein CISIN_1g0381851mg, partial [Citrus sinensis]	[more]
gi\|567863538\|ref\|XP_006424423.1\|	2.3e-09	48.75	hypothetical protein CICLE_v10029845mg [Citrus clementina]	[more]
gi\|595835729\|ref\|XP_007207110.1\|	1.6e-07	43.18	hypothetical protein PRUPE_ppa019744mg, partial [Prunus persica]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G135270.1	Csa1G135270.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G135270	Cla001050	Watermelon (97103) v1	cuwmB047
Csa1G135270	ClCG01G013950	Watermelon (Charleston Gray)	cuwcgB014
Csa1G135270	Lsi03G000650	Bottle gourd (USVL1VR-Ls)	culsiB044
Csa1G135270	MELO3C035553.2	Melon (DHL92) v3.6.1	cumedB010
Csa1G135270	Cla97C01G012920	Watermelon (97103) v2	cuwmbB002
Csa1G135270	Bhi08G000110	Wax gourd	cuwgoB049
Csa1G135270	CSPI01G14050	Wild cucumber (PI 183967)	cpicuB000
Csa1G135270	CmaCh12G008100	Cucurbita maxima (Rimu)	cmacuB163
Csa1G135270	CmaCh13G002660	Cucurbita maxima (Rimu)	cmacuB203
Csa1G135270	CmoCh13G002730	Cucurbita moschata (Rifu)	cmocuB188
Csa1G135270	Cp4.1LG07g06750	Cucurbita pepo (Zucchini)	cpecuB805
Csa1G135270	Cp4.1LG20g07400	Cucurbita pepo (Zucchini)	cpecuB516
Csa1G135270	CsGy1G014040	Cucumber (Gy14) v2	cgybcuB001
Csa1G135270	Carg23699	Silver-seed gourd	carcuB0185

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G135270	Watermelon (97103) v2	cuwmbB026
Csa1G135270	Cucumber (Gy14) v1	cgycuB305
Csa1G135270	Cucurbita maxima (Rimu)	cmacuB579
Csa1G135270	Cucurbita moschata (Rifu)	cmocuB148
Csa1G135270	Melon (DHL92) v3.5.1	cumeB015
Csa1G135270	Watermelon (Charleston Gray)	cuwcgB028
Csa1G135270	Watermelon (97103) v1	cuwmB065
Csa1G135270	Bottle gourd (USVL1VR-Ls)	culsiB005