CmoCh13G002730 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh13G002730
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionCyclin-dependent protein kinase inhibitor Siamese
LocationCmo_Chr13 : 2223015 .. 2223338 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCAATTTCACAAATCCGATCACCAAAAGGTAAAAGAACCACCAAAGCCACCGGAAGAAGGTGATCGGAGCAAGGAGGAAGACGGCGGCGGAGAAGCAGTGGATTGTGGTGGAGAGAGCTGCCGAACTCCGACATCTCTCCGACATCGAATTCCCACCGCACGAAGCTACCCGACGACACCGAGAAAGCGGAAGGTTGCGAGCAAGAGGAAATTTTCAGATCAAAGCTTCTTCGAGGTCACCGGACGGGGAGAGGTAGAATCCTTGTTTGCCTTATTTTACAGGGTTTCTTCTGCCAAAAGAAGATTTACAAATATATAA

mRNA sequence

ATGTCTCAATTTCACAAATCCGATCACCAAAAGGTAAAAGAACCACCAAAGCCACCGGAAGAAGGTGATCGGAGCAAGGAGGAAGACGGCGGCGGAGAAGCAGTGGATTGTGGTGGAGAGAGCTGCCGAACTCCGACATCTCTCCGACATCGAATTCCCACCGCACGAAGCTACCCGACGACACCGAGAAAGCGGAAGGTTGCGAGCAAGAGGAAATTTTCAGATCAAAGCTTCTTCGAGGTCACCGGACGGGGAGAGGTAGAATCCTTGTTTGCCTTATTTTACAGGGTTTCTTCTGCCAAAAGAAGATTTACAAATATATAA

Coding sequence (CDS)

ATGTCTCAATTTCACAAATCCGATCACCAAAAGGTAAAAGAACCACCAAAGCCACCGGAAGAAGGTGATCGGAGCAAGGAGGAAGACGGCGGCGGAGAAGCAGTGGATTGTGGTGGAGAGAGCTGCCGAACTCCGACATCTCTCCGACATCGAATTCCCACCGCACGAAGCTACCCGACGACACCGAGAAAGCGGAAGGTTGCGAGCAAGAGGAAATTTTCAGATCAAAGCTTCTTCGAGGTCACCGGACGGGGAGAGGTAGAATCCTTGTTTGCCTTATTTTACAGGGTTTCTTCTGCCAAAAGAAGATTTACAAATATATAA
Homology
[Close]
BLAST of CmoCh13G002730 vs. TrEMBL
Match: A0A0A0LV74_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G135270 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 5.6e-22
Identity = 63/90 (70.00%), Postives = 69/90 (76.67%), Query Frame = 1 

Query: 1  MSQFHKSDHQKVKEPPKPPEEGDRSKEEDGGGEAVDCG----GESCRTPTSLRHRIPTAR 60
          MSQFHKSD QKV E P+ PE GDRS EE G GEA+       GESCRTPTS +HRIP A+
Sbjct: 1  MSQFHKSDQQKVLEAPEAPEHGDRSTEE-GRGEALKAAEHDDGESCRTPTSPQHRIPIAQ 60

Query: 61 SYPTTPRKRKVASKRKFSDQSFFEVTGRGE 87
          S PTTPRK++V  KRKFSDQSFFE TGRGE
Sbjct: 61 SCPTTPRKQRVVRKRKFSDQSFFEATGRGE 89

[Close]
BLAST of CmoCh13G002730 vs. TrEMBL
Match: M5W3L3_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa019744mg PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.9e-07
Identity = 49/111 (44.14%), Postives = 63/111 (56.76%), Query Frame = 1 

Query: 1   MSQFHKSDHQKVKEPPKPPEEGDRSKEEDGGGEAVDCGGESCRTPTSLRHRIPTARSYPT 60
           +S FH  DHQ   +PP+  +E D + E       +   G+ CRTPTS  H+IPT +S PT
Sbjct: 10  LSIFH--DHQ---QPPQGLKEKDDNSEP-----IIRKEGDDCRTPTSRDHKIPTIQSCPT 69

Query: 61  TPRKRKVA--SKRKFSDQSFFEVTGRGEVESLFALFYRVSS--AKRRFTNI 108
           TPRK+  A   KRK +   FFE TGR EVES F   +   S   K+R T+I
Sbjct: 70  TPRKKGQAFVCKRKLAVFDFFERTGREEVESFFRSCFESPSPRVKKRCTSI 110

[Close]
BLAST of CmoCh13G002730 vs. TrEMBL
Match: W9S3U9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011762 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 8.7e-07
Identity = 34/72 (47.22%), Postives = 44/72 (61.11%), Query Frame = 1 

Query: 40  ESCRTPTSLRHRIPTARSYPTTPRK----RKVASKRKFSDQSFFEVTGRGEVESLFALFY 99
           + C+TPTS   +IPT +S P TPRK    R    KRKFS+  FFE TGR EVES F   +
Sbjct: 61  DDCKTPTSEDQKIPTTQSCPPTPRKPASDRVFLRKRKFSEFHFFESTGREEVESFFRSTF 120

Query: 100 RVSSAKRRFTNI 108
           + S  K+R  ++
Sbjct: 121 KFSGLKKRCKSV 132

[Close]
BLAST of CmoCh13G002730 vs. TrEMBL
Match: A5BGU0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_025690 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.3e-06
Identity = 39/75 (52.00%), Postives = 48/75 (64.00%), Query Frame = 1 

Query: 40  ESCRTPTSLRHRIPTARSYPTTPRKR-KVAS-KRKFSDQSFFEVTGRGEVESLFAL---F 99
           E CRTPTS  H+IP+  S P  P+KR KV S KRKF +  FFE TG  EV+SLF      
Sbjct: 30  EGCRTPTSRDHKIPSILSCPPAPKKRGKVLSQKRKFQEVQFFEFTGGDEVDSLFKSSFEL 89

Query: 100 YRVSS---AKRRFTN 107
           +RVSS    K+R+T+
Sbjct: 90  FRVSSRSVKKKRYTS 104

[Close]
BLAST of CmoCh13G002730 vs. NCBI nr
Match: gi|700209773|gb|KGN64869.1| (hypothetical protein Csa_1G135270 [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 8.0e-22
Identity = 63/90 (70.00%), Postives = 69/90 (76.67%), Query Frame = 1 

Query: 1  MSQFHKSDHQKVKEPPKPPEEGDRSKEEDGGGEAVDCG----GESCRTPTSLRHRIPTAR 60
          MSQFHKSD QKV E P+ PE GDRS EE G GEA+       GESCRTPTS +HRIP A+
Sbjct: 1  MSQFHKSDQQKVLEAPEAPEHGDRSTEE-GRGEALKAAEHDDGESCRTPTSPQHRIPIAQ 60

Query: 61 SYPTTPRKRKVASKRKFSDQSFFEVTGRGE 87
          S PTTPRK++V  KRKFSDQSFFE TGRGE
Sbjct: 61 SCPTTPRKQRVVRKRKFSDQSFFEATGRGE 89

[Close]
BLAST of CmoCh13G002730 vs. NCBI nr
Match: gi|595835729|ref|XP_007207110.1| (hypothetical protein PRUPE_ppa019744mg, partial [Prunus persica])

HSP 1 Score: 62.4 bits (150), Expect = 5.6e-07
Identity = 49/111 (44.14%), Postives = 63/111 (56.76%), Query Frame = 1 

Query: 1   MSQFHKSDHQKVKEPPKPPEEGDRSKEEDGGGEAVDCGGESCRTPTSLRHRIPTARSYPT 60
           +S FH  DHQ   +PP+  +E D + E       +   G+ CRTPTS  H+IPT +S PT
Sbjct: 10  LSIFH--DHQ---QPPQGLKEKDDNSEP-----IIRKEGDDCRTPTSRDHKIPTIQSCPT 69

Query: 61  TPRKRKVA--SKRKFSDQSFFEVTGRGEVESLFALFYRVSS--AKRRFTNI 108
           TPRK+  A   KRK +   FFE TGR EVES F   +   S   K+R T+I
Sbjct: 70  TPRKKGQAFVCKRKLAVFDFFERTGREEVESFFRSCFESPSPRVKKRCTSI 110

[Close]
BLAST of CmoCh13G002730 vs. NCBI nr
Match: gi|703150667|ref|XP_010109920.1| (hypothetical protein L484_011762 [Morus notabilis])

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-06
Identity = 34/72 (47.22%), Postives = 44/72 (61.11%), Query Frame = 1 

Query: 40  ESCRTPTSLRHRIPTARSYPTTPRK----RKVASKRKFSDQSFFEVTGRGEVESLFALFY 99
           + C+TPTS   +IPT +S P TPRK    R    KRKFS+  FFE TGR EVES F   +
Sbjct: 61  DDCKTPTSEDQKIPTTQSCPPTPRKPASDRVFLRKRKFSEFHFFESTGREEVESFFRSTF 120

Query: 100 RVSSAKRRFTNI 108
           + S  K+R  ++
Sbjct: 121 KFSGLKKRCKSV 132

[Close]
BLAST of CmoCh13G002730 vs. NCBI nr
Match: gi|147864041|emb|CAN78956.1| (hypothetical protein VITISV_025690 [Vitis vinifera])

HSP 1 Score: 59.3 bits (142), Expect = 4.7e-06
Identity = 39/75 (52.00%), Postives = 48/75 (64.00%), Query Frame = 1 

Query: 40  ESCRTPTSLRHRIPTARSYPTTPRKR-KVAS-KRKFSDQSFFEVTGRGEVESLFAL---F 99
           E CRTPTS  H+IP+  S P  P+KR KV S KRKF +  FFE TG  EV+SLF      
Sbjct: 30  EGCRTPTSRDHKIPSILSCPPAPKKRGKVLSQKRKFQEVQFFEFTGGDEVDSLFKSSFEL 89

Query: 100 YRVSS---AKRRFTN 107
           +RVSS    K+R+T+
Sbjct: 90  FRVSSRSVKKKRYTS 104

The following BLAST results are available for this feature:
BLAST of CmoCh13G002730 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh13G002730 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LV74_CUCSA5.6e-2270.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G135270 PE=4 SV=1[more]
M5W3L3_PRUPE3.9e-0744.14Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa019744mg PE=4 S... [more]
W9S3U9_9ROSA8.7e-0747.22Uncharacterized protein OS=Morus notabilis GN=L484_011762 PE=4 SV=1[more]
A5BGU0_VITVI3.3e-0652.00Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_025690 PE=4 SV=1[more]
BLAST of CmoCh13G002730 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh13G002730 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209773|gb|KGN64869.1|8.0e-2270.00hypothetical protein Csa_1G135270 [Cucumis sativus][more]
gi|595835729|ref|XP_007207110.1|5.6e-0744.14hypothetical protein PRUPE_ppa019744mg, partial [Prunus persica][more]
gi|703150667|ref|XP_010109920.1|1.2e-0647.22hypothetical protein L484_011762 [Morus notabilis][more]
gi|147864041|emb|CAN78956.1|4.7e-0652.00hypothetical protein VITISV_025690 [Vitis vinifera][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G002730.1CmoCh13G002730.1mRNA