Cp4.1LG20g07400 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG20g07400
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG20 : 6129524 .. 6129847 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCAATTTCACAAATCCGATCACCAAAAGGTAAAAGAACCACCAAAGCCACCGGAGGAAGGTGATCGGAGCAAGGAGGAAGACGGCGGCGGAGAAGCAGTGGATTGTGGTGGAGAGAGCTGCCGAACTCCGACATCTCTCCAACATCGAATTCCCACCGCACGAAGCTACCCGACGACGCCGAGAAAGCGGAAGGTTGCGAGCAAGAGGAAATTTTCAGATCAAAGCTTCTTCGAGGTCGCCGGACGGGGAGAGGTAGAATCCTTGTTTGCCTTATTTTACAGGGTCTCTTCTACCAAAAGAAGATTTACAAATATATAA

mRNA sequence

ATGTCTCAATTTCACAAATCCGATCACCAAAAGGTAAAAGAACCACCAAAGCCACCGGAGGAAGGTGATCGGAGCAAGGAGGAAGACGGCGGCGGAGAAGCAGTGGATTGTGGTGGAGAGAGCTGCCGAACTCCGACATCTCTCCAACATCGAATTCCCACCGCACGAAGCTACCCGACGACGCCGAGAAAGCGGAAGGTTGCGAGCAAGAGGAAATTTTCAGATCAAAGCTTCTTCGAGGTCGCCGGACGGGGAGAGGTAGAATCCTTGTTTGCCTTATTTTACAGGGTCTCTTCTACCAAAAGAAGATTTACAAATATATAA

Coding sequence (CDS)

ATGTCTCAATTTCACAAATCCGATCACCAAAAGGTAAAAGAACCACCAAAGCCACCGGAGGAAGGTGATCGGAGCAAGGAGGAAGACGGCGGCGGAGAAGCAGTGGATTGTGGTGGAGAGAGCTGCCGAACTCCGACATCTCTCCAACATCGAATTCCCACCGCACGAAGCTACCCGACGACGCCGAGAAAGCGGAAGGTTGCGAGCAAGAGGAAATTTTCAGATCAAAGCTTCTTCGAGGTCGCCGGACGGGGAGAGGTAGAATCCTTGTTTGCCTTATTTTACAGGGTCTCTTCTACCAAAAGAAGATTTACAAATATATAA

Protein sequence

MSQFHKSDHQKVKEPPKPPEEGDRSKEEDGGGEAVDCGGESCRTPTSLQHRIPTARSYPTTPRKRKVASKRKFSDQSFFEVAGRGEVESLFALFYRVSSTKRRFTNI
BLAST of Cp4.1LG20g07400 vs. TrEMBL
Match: A0A0A0LV74_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G135270 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 7.3e-22
Identity = 63/90 (70.00%), Postives = 68/90 (75.56%), Query Frame = 1

Query: 1  MSQFHKSDHQKVKEPPKPPEEGDRSKEEDGGGEAVDCG----GESCRTPTSLQHRIPTAR 60
          MSQFHKSD QKV E P+ PE GDRS EE G GEA+       GESCRTPTS QHRIP A+
Sbjct: 1  MSQFHKSDQQKVLEAPEAPEHGDRSTEE-GRGEALKAAEHDDGESCRTPTSPQHRIPIAQ 60

Query: 61 SYPTTPRKRKVASKRKFSDQSFFEVAGRGE 87
          S PTTPRK++V  KRKFSDQSFFE  GRGE
Sbjct: 61 SCPTTPRKQRVVRKRKFSDQSFFEATGRGE 89

BLAST of Cp4.1LG20g07400 vs. TrEMBL
Match: M5W3L3_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa019744mg PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 8.7e-07
Identity = 48/111 (43.24%), Postives = 62/111 (55.86%), Query Frame = 1

Query: 1   MSQFHKSDHQKVKEPPKPPEEGDRSKEEDGGGEAVDCGGESCRTPTSLQHRIPTARSYPT 60
           +S FH  DHQ   +PP+  +E D + E       +   G+ CRTPTS  H+IPT +S PT
Sbjct: 10  LSIFH--DHQ---QPPQGLKEKDDNSEP-----IIRKEGDDCRTPTSRDHKIPTIQSCPT 69

Query: 61  TPRKRKVA--SKRKFSDQSFFEVAGRGEVESLFALFYRVSS--TKRRFTNI 108
           TPRK+  A   KRK +   FFE  GR EVES F   +   S   K+R T+I
Sbjct: 70  TPRKKGQAFVCKRKLAVFDFFERTGREEVESFFRSCFESPSPRVKKRCTSI 110

BLAST of Cp4.1LG20g07400 vs. TrEMBL
Match: W9S3U9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011762 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.9e-06
Identity = 33/72 (45.83%), Postives = 43/72 (59.72%), Query Frame = 1

Query: 40  ESCRTPTSLQHRIPTARSYPTTPRK----RKVASKRKFSDQSFFEVAGRGEVESLFALFY 99
           + C+TPTS   +IPT +S P TPRK    R    KRKFS+  FFE  GR EVES F   +
Sbjct: 61  DDCKTPTSEDQKIPTTQSCPPTPRKPASDRVFLRKRKFSEFHFFESTGREEVESFFRSTF 120

Query: 100 RVSSTKRRFTNI 108
           + S  K+R  ++
Sbjct: 121 KFSGLKKRCKSV 132

BLAST of Cp4.1LG20g07400 vs. TrEMBL
Match: A5BGU0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_025690 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 7.3e-06
Identity = 38/75 (50.67%), Postives = 47/75 (62.67%), Query Frame = 1

Query: 40  ESCRTPTSLQHRIPTARSYPTTPRKR-KVAS-KRKFSDQSFFEVAGRGEVESLFAL---F 99
           E CRTPTS  H+IP+  S P  P+KR KV S KRKF +  FFE  G  EV+SLF      
Sbjct: 30  EGCRTPTSRDHKIPSILSCPPAPKKRGKVLSQKRKFQEVQFFEFTGGDEVDSLFKSSFEL 89

Query: 100 YRVSS---TKRRFTN 107
           +RVSS    K+R+T+
Sbjct: 90  FRVSSRSVKKKRYTS 104

BLAST of Cp4.1LG20g07400 vs. NCBI nr
Match: gi|700209773|gb|KGN64869.1| (hypothetical protein Csa_1G135270 [Cucumis sativus])

HSP 1 Score: 111.3 bits (277), Expect = 1.0e-21
Identity = 63/90 (70.00%), Postives = 68/90 (75.56%), Query Frame = 1

Query: 1  MSQFHKSDHQKVKEPPKPPEEGDRSKEEDGGGEAVDCG----GESCRTPTSLQHRIPTAR 60
          MSQFHKSD QKV E P+ PE GDRS EE G GEA+       GESCRTPTS QHRIP A+
Sbjct: 1  MSQFHKSDQQKVLEAPEAPEHGDRSTEE-GRGEALKAAEHDDGESCRTPTSPQHRIPIAQ 60

Query: 61 SYPTTPRKRKVASKRKFSDQSFFEVAGRGE 87
          S PTTPRK++V  KRKFSDQSFFE  GRGE
Sbjct: 61 SCPTTPRKQRVVRKRKFSDQSFFEATGRGE 89

BLAST of Cp4.1LG20g07400 vs. NCBI nr
Match: gi|595835729|ref|XP_007207110.1| (hypothetical protein PRUPE_ppa019744mg, partial [Prunus persica])

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-06
Identity = 48/111 (43.24%), Postives = 62/111 (55.86%), Query Frame = 1

Query: 1   MSQFHKSDHQKVKEPPKPPEEGDRSKEEDGGGEAVDCGGESCRTPTSLQHRIPTARSYPT 60
           +S FH  DHQ   +PP+  +E D + E       +   G+ CRTPTS  H+IPT +S PT
Sbjct: 10  LSIFH--DHQ---QPPQGLKEKDDNSEP-----IIRKEGDDCRTPTSRDHKIPTIQSCPT 69

Query: 61  TPRKRKVA--SKRKFSDQSFFEVAGRGEVESLFALFYRVSS--TKRRFTNI 108
           TPRK+  A   KRK +   FFE  GR EVES F   +   S   K+R T+I
Sbjct: 70  TPRKKGQAFVCKRKLAVFDFFERTGREEVESFFRSCFESPSPRVKKRCTSI 110

BLAST of Cp4.1LG20g07400 vs. NCBI nr
Match: gi|703150667|ref|XP_010109920.1| (hypothetical protein L484_011762 [Morus notabilis])

HSP 1 Score: 60.1 bits (144), Expect = 2.8e-06
Identity = 33/72 (45.83%), Postives = 43/72 (59.72%), Query Frame = 1

Query: 40  ESCRTPTSLQHRIPTARSYPTTPRK----RKVASKRKFSDQSFFEVAGRGEVESLFALFY 99
           + C+TPTS   +IPT +S P TPRK    R    KRKFS+  FFE  GR EVES F   +
Sbjct: 61  DDCKTPTSEDQKIPTTQSCPPTPRKPASDRVFLRKRKFSEFHFFESTGREEVESFFRSTF 120

Query: 100 RVSSTKRRFTNI 108
           + S  K+R  ++
Sbjct: 121 KFSGLKKRCKSV 132

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LV74_CUCSA7.3e-2270.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G135270 PE=4 SV=1[more]
M5W3L3_PRUPE8.7e-0743.24Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa019744mg PE=4 S... [more]
W9S3U9_9ROSA1.9e-0645.83Uncharacterized protein OS=Morus notabilis GN=L484_011762 PE=4 SV=1[more]
A5BGU0_VITVI7.3e-0650.67Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_025690 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|700209773|gb|KGN64869.1|1.0e-2170.00hypothetical protein Csa_1G135270 [Cucumis sativus][more]
gi|595835729|ref|XP_007207110.1|1.2e-0643.24hypothetical protein PRUPE_ppa019744mg, partial [Prunus persica][more]
gi|703150667|ref|XP_010109920.1|2.8e-0645.83hypothetical protein L484_011762 [Morus notabilis][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG20g07400.1Cp4.1LG20g07400.1mRNA


The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG20g07400Cp4.1LG07g06750Cucurbita pepo (Zucchini)cpecpeB446
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG20g07400Watermelon (97103) v1cpewmB515
Cp4.1LG20g07400Melon (DHL92) v3.5.1cpemeB480
Cp4.1LG20g07400Cucumber (Gy14) v2cgybcpeB076
Cp4.1LG20g07400Silver-seed gourdcarcpeB1278
Cp4.1LG20g07400Cucumber (Chinese Long) v3cpecucB0631
Cp4.1LG20g07400Wax gourdcpewgoB0660
Cp4.1LG20g07400Cucumber (Gy14) v1cgycpeB0565
Cp4.1LG20g07400Cucurbita moschata (Rifu)cmocpeB165