MELO3C026846.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C026846.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr12 : 3417672 .. 3418313 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTCATAAATTATTTATCAACGATTCCCTAATTTCTCTTCCTCCCAAAAAGAAATTATCTTTTTTTTTTTATATATATTTTTATATTTTATATCAATAAATTTCCCAATTTCCCTCCGTTCAAACCAACCTCACCCGCCGCCCCCCATCAAATCCCCTGATTCTCGCCCCCTTCTTACTCCTTCACTCTACTCCACTTCATCCACCATTTCAACCGCAATTTCAATGAATTCGAACAAGGAACCCAGGAAACGGATGCCGGAATTTCCGCCTCGACGGGGTTTAATCAAGATCAAGATCTTCCGGAGCATTTTCAGGACGGTGAAATCCATACCGGAAGGATTCGCGAGAAGCCGGCGAGAAGACGAAACTCTAACTTCGACTTCGACAACGCCGGCTCCAGGTACTAGCGGGTATAACTCGGAAGCTCAGTCCGAGTCATGAAGAAGAGTTTGTGACTCGAAATCATGAACTCGATCGTTGAATTGGTGGTAAATTTTTCATAGGGGTCTCGCTACCTTTCAACTTCACACCATATTAATTATTTTGTATTTGTTAAATGTATAGTTCTTGAGACCCTGTTTCTGTTGATTTAGGCTTAGATTGTAATTAATATTAAATATACTATAATTTTGTTACCTA

mRNA sequence

ATTTCATAAATTATTTATCAACGATTCCCTAATTTCTCTTCCTCCCAAAAAGAAATTATCTTTTTTTTTTTATATATATTTTTATATTTTATATCAATAAATTTCCCAATTTCCCTCCGTTCAAACCAACCTCACCCGCCGCCCCCCATCAAATCCCCTGATTCTCGCCCCCTTCTTACTCCTTCACTCTACTCCACTTCATCCACCATTTCAACCGCAATTTCAATGAATTCGAACAAGGAACCCAGGAAACGGATGCCGGAATTTCCGCCTCGACGGGGTTTAATCAAGATCAAGATCTTCCGGAGCATTTTCAGGACGGTGAAATCCATACCGGAAGGATTCGCGAGAAGCCGGCGAGAAGACGAAACTCTAACTTCGACTTCGACAACGCCGGCTCCAGGTACTAGCGGGTATAACTCGGAAGCTCAGTCCGAGTCATGAAGAAGAGTTTGTGACTCGAAATCATGAACTCGATCGTTGAATTGGTGGTAAATTTTTCATAGGGGTCTCGCTACCTTTCAACTTCACACCATATTAATTATTTTGTATTTGTTAAATGTATAGTTCTTGAGACCCTGTTTCTGTTGATTTAGGCTTAGATTGTAATTAATATTAAATATACTATAATTTTGTTACCTA

Coding sequence (CDS)

ATGAATTCGAACAAGGAACCCAGGAAACGGATGCCGGAATTTCCGCCTCGACGGGGTTTAATCAAGATCAAGATCTTCCGGAGCATTTTCAGGACGGTGAAATCCATACCGGAAGGATTCGCGAGAAGCCGGCGAGAAGACGAAACTCTAACTTCGACTTCGACAACGCCGGCTCCAGGTACTAGCGGGTATAACTCGGAAGCTCAGTCCGAGTCATGA

Protein sequence

MNSNKEPRKRMPEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETLTSTSTTPAPGTSGYNSEAQSES

Homology

[Close]

BLAST of MELO3C026846.2 vs. NCBI nr
Match: KGN64717.1 (hypothetical protein Csa_1G077190 [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 4.4e-12
Identity = 49/76 (64.47%), Postives = 50/76 (65.79%), Query Frame = 0


Query: 1  MNSNKEPRKRMPEFPPRRGLIKIKIFRSIFRTVKSIPEGFARS----RREDETLTSTSTT 60
          MNS K+PRKR  EFPPRRGLIKIKIFRSIFRTVKSIPEGFARS                 
Sbjct: 1  MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSXXXXXXXXXXXXXXXXX 60

Query: 61 PAPGTSGYNSEAQSES 73
               SGYNSEAQ ES
Sbjct: 61 XXXXXSGYNSEAQPES 76

[Close]

BLAST of MELO3C026846.2 vs. TrEMBL
Match: tr|A0A0A0LV79|A0A0A0LV79_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077190 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.9e-12
Identity = 49/76 (64.47%), Postives = 50/76 (65.79%), Query Frame = 0


Query: 1  MNSNKEPRKRMPEFPPRRGLIKIKIFRSIFRTVKSIPEGFARS----RREDETLTSTSTT 60
          MNS K+PRKR  EFPPRRGLIKIKIFRSIFRTVKSIPEGFARS                 
Sbjct: 1  MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSXXXXXXXXXXXXXXXXX 60

Query: 61 PAPGTSGYNSEAQSES 73
               SGYNSEAQ ES
Sbjct: 61 XXXXXSGYNSEAQPES 76

[Close]

BLAST of MELO3C026846.2 vs. TrEMBL
Match: tr|A0A2G9FZK3|A0A2G9FZK3_9LAMI (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_29020 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 8.5e-04
Identity = 32/55 (58.18%), Postives = 39/55 (70.91%), Query Frame = 0


Query: 13 EFPPRRGLIKIKIFRSIFRTVKSIPEGFARS-RREDETLTSTSTTPAPGTSGYNS 67
          +FPP RG IKIKIFRS+   VKS+ + F  S RR+ + L+STSTTP    SGYNS
Sbjct: 12 KFPPERGQIKIKIFRSL---VKSVGQFFDESKRRKGKALSSTSTTPHETPSGYNS 63

The following BLAST results are available for this feature:

BLAST of MELO3C026846.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64717.1	4.4e-12	64.47	hypothetical protein Csa_1G077190 [Cucumis sativus]	[more]

BLAST of MELO3C026846.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C026846.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C026846.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LV79\|A0A0A0LV79_CUCSA	2.9e-12	64.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077190 PE=4 SV=1	[more]
tr\|A0A2G9FZK3\|A0A2G9FZK3_9LAMI	8.5e-04	58.18	Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_29020 P...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C026846.2.1	MELO3C026846.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..72

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C026846.2	Csa1G077190	Cucumber (Chinese Long) v2	cumedB010
MELO3C026846.2	CSPI01G12520	Wild cucumber (PI 183967)	cpimedB011
MELO3C026846.2	Cucsa.127070	Cucumber (Gy14) v1	cgymedB196
MELO3C026846.2	Cp4.1LG20g08930	Cucurbita pepo (Zucchini)	cpemedB561
MELO3C026846.2	Cp4.1LG02g13040	Cucurbita pepo (Zucchini)	cpemedB581
MELO3C026846.2	CsGy1G012550	Cucumber (Gy14) v2	cgybmedB009
MELO3C026846.2	Cla008296	Watermelon (97103) v1	medwmB143
MELO3C026846.2	ClCG03G002060	Watermelon (Charleston Gray)	medwcgB141
MELO3C026846.2	Cla97C03G053060	Watermelon (97103) v2	medwmbB142
MELO3C026846.2	Bhi08G000298	Wax gourd	medwgoB170
MELO3C026846.2	CsaV3_1G012710	Cucumber (Chinese Long) v3	cucmedB009

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C026846.2	Cucurbita maxima (Rimu)	cmamedB215
MELO3C026846.2	Cucurbita maxima (Rimu)	cmamedB451
MELO3C026846.2	Cucurbita moschata (Rifu)	cmomedB203
MELO3C026846.2	Cucurbita moschata (Rifu)	cmomedB439
MELO3C026846.2	Bottle gourd (USVL1VR-Ls)	lsimedB183
MELO3C026846.2	Silver-seed gourd	carmedB0451
MELO3C026846.2	Silver-seed gourd	carmedB0734