Bhi08G000298 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi08G000298
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Unknown protein
Location	chr8 : 12368235 .. 12369156 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGACTTCGTAAACAAGCTAAGCAAGGGAAATCCCCAATTTACCCATCTCCCTCTATAAAACCCCCCCTTTTATCTCACATTCTTTATCGACAATTTTCCTTCCCCAAAAAAGAAATATATATTTCCAGGCTCAGCCGACGCCCGCCATCCGCCGCCGTCGCCGCAGCTTCTCGCTGCCTTCTTACTCCTTCACTCTGCTCCAATCACTCAATTCGCCAATTCTCTCACCAATTTCACCGTTTCGGACCTCAATTTCAATGAATTCGAACAAAGAACGGTTGAAGCGGCCGTCGGAGCTGCCGCCGAGACGAGGTTTGATCAAGATCAGAATTTTCCGAAGCATCTTCAGAACAGTGAAATCGATACCGGAAGGATTCGCAAGAGGACGGAGAGAAGACGAAACCCTAACCTCGACTTCGACCACGCCGGCTCCAGGTACTAGCGGCTACAACTCGGAAGCTCAGTCCGAGTCATGAAGAAGAGTGAGCGAGTTCTTGACTCCGAATCATGAACTCGCTCACTAAGCTTCTGGTAAATTCTCGCTCGGGGTGTCTCGCTCTGTATGAAATCAGATGTAGTGTATTATTTTAGCATTTACTCTACACCATAACCTTAAGCTTTTCCCCTTTTTCTTCTCTTTTTATTCTTTTTGTTCTGATTAATTATTTTGTTTTATTTTCCTTCTTTTTGTTAAAATGTGTAATTCTTGAGACCCCTGTTTCTGTTACTTTAGGTTGAGATTATGATTAATTTCATAAATTGAAATCGAATTTGTTTACATATTTGATGGATCTTGGCTCTTGCCCTGTGCTCTGTGGATTTGGAAGTAGTTTGGTAATAATGTTATGAAACTTTTTGTTGGGAATCACTTCAGCAAAAAAGTAGCTTCCAAATTATAGCTGTGCTGAAAATAGAAACTTC

mRNA sequence

CAGACTTCGTAAACAAGCTAAGCAAGGGAAATCCCCAATTTACCCATCTCCCTCTATAAAACCCCCCCTTTTATCTCACATTCTTTATCGACAATTTTCCTTCCCCAAAAAAGAAATATATATTTCCAGGCTCAGCCGACGCCCGCCATCCGCCGCCGTCGCCGCAGCTTCTCGCTGCCTTCTTACTCCTTCACTCTGCTCCAATCACTCAATTCGCCAATTCTCTCACCAATTTCACCGTTTCGGACCTCAATTTCAATGAATTCGAACAAAGAACGGTTGAAGCGGCCGTCGGAGCTGCCGCCGAGACGAGGTTTGATCAAGATCAGAATTTTCCGAAGCATCTTCAGAACAGTGAAATCGATACCGGAAGGATTCGCAAGAGGACGGAGAGAAGACGAAACCCTAACCTCGACTTCGACCACGCCGGCTCCAGGTACTAGCGGCTACAACTCGGAAGCTCAGTCCGAGTCATGAAGAAGAGTGAGCGAGTTCTTGACTCCGAATCATGAACTCGCTCACTAAGCTTCTGGTAAATTCTCGCTCGGGGTGTCTCGCTCTGTATGAAATCAGATGTAGTGTATTATTTTAGCATTTACTCTACACCATAACCTTAAGCTTTTCCCCTTTTTCTTCTCTTTTTATTCTTTTTGTTCTGATTAATTATTTTGTTTTATTTTCCTTCTTTTTGTTAAAATGTGTAATTCTTGAGACCCCTGTTTCTGTTACTTTAGGTTGAGATTATGATTAATTTCATAAATTGAAATCGAATTTGTTTACATATTTGATGGATCTTGGCTCTTGCCCTGTGCTCTGTGGATTTGGAAGTAGTTTGGTAATAATGTTATGAAACTTTTTGTTGGGAATCACTTCAGCAAAAAAGTAGCTTCCAAATTATAGCTGTGCTGAAAATAGAAACTTC

Coding sequence (CDS)

ATGAATTCGAACAAAGAACGGTTGAAGCGGCCGTCGGAGCTGCCGCCGAGACGAGGTTTGATCAAGATCAGAATTTTCCGAAGCATCTTCAGAACAGTGAAATCGATACCGGAAGGATTCGCAAGAGGACGGAGAGAAGACGAAACCCTAACCTCGACTTCGACCACGCCGGCTCCAGGTACTAGCGGCTACAACTCGGAAGCTCAGTCCGAGTCATGA

Protein sequence

MNSNKERLKRPSELPPRRGLIKIRIFRSIFRTVKSIPEGFARGRREDETLTSTSTTPAPGTSGYNSEAQSES

Homology

[Close]

BLAST of Bhi08G000298 vs. TrEMBL
Match: tr|A0A0A0LV79|A0A0A0LV79_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077190 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.0e-09
Identity = 44/76 (57.89%), Postives = 47/76 (61.84%), Query Frame = 0


Query: 1  MNSNKERLKRPSELPPRRGLIKIRIFRSIFRTVKSIPEGFARG----RREDETLTSTSTT 60
          MNS K+  KR +E PPRRGLIKI+IFRSIFRTVKSIPEGFAR                  
Sbjct: 1  MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSXXXXXXXXXXXXXXXXX 60

Query: 61 PAPGTSGYNSEAQSES 73
               SGYNSEAQ ES
Sbjct: 61 XXXXXSGYNSEAQPES 76

[Close]

BLAST of Bhi08G000298 vs. NCBI nr
Match: KGN64717.1 (hypothetical protein Csa_1G077190 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 4.6e-09
Identity = 44/76 (57.89%), Postives = 47/76 (61.84%), Query Frame = 0


Query: 1  MNSNKERLKRPSELPPRRGLIKIRIFRSIFRTVKSIPEGFARG----RREDETLTSTSTT 60
          MNS K+  KR +E PPRRGLIKI+IFRSIFRTVKSIPEGFAR                  
Sbjct: 1  MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSXXXXXXXXXXXXXXXXX 60

Query: 61 PAPGTSGYNSEAQSES 73
               SGYNSEAQ ES
Sbjct: 61 XXXXXSGYNSEAQPES 76

The following BLAST results are available for this feature:

BLAST of Bhi08G000298 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi08G000298 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi08G000298 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LV79\|A0A0A0LV79_CUCSA	3.0e-09	57.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077190 PE=4 SV=1	[more]

BLAST of Bhi08G000298 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64717.1	4.6e-09	57.89	hypothetical protein Csa_1G077190 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi08M000298	Bhi08M000298	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..72

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi08G000298	Csa1G077190	Cucumber (Chinese Long) v2	cuwgoB042
Bhi08G000298	MELO3C026846	Melon (DHL92) v3.5.1	mewgoB168
Bhi08G000298	ClCG03G002060	Watermelon (Charleston Gray)	wcgwgoB348
Bhi08G000298	CSPI01G12520	Wild cucumber (PI 183967)	cpiwgoB042
Bhi08G000298	Cucsa.127070	Cucumber (Gy14) v1	cgywgoB234
Bhi08G000298	Cp4.1LG20g08930	Cucurbita pepo (Zucchini)	cpewgoB0658
Bhi08G000298	Cp4.1LG02g13040	Cucurbita pepo (Zucchini)	cpewgoB0704
Bhi08G000298	CsGy1G012550	Cucumber (Gy14) v2	cgybwgoB039
Bhi08G000298	MELO3C026846.2	Melon (DHL92) v3.6.1	medwgoB170
Bhi08G000298	CsaV3_1G012710	Cucumber (Chinese Long) v3	cucwgoB045
Bhi08G000298	Cla008296	Watermelon (97103) v1	wgowmB479
Bhi08G000298	Cla97C03G053060	Watermelon (97103) v2	wgowmbB478

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi08G000298	Cucumber (Gy14) v2	cgybwgoB038
Bhi08G000298	Cucurbita maxima (Rimu)	cmawgoB0589
Bhi08G000298	Cucurbita moschata (Rifu)	cmowgoB0252
Bhi08G000298	Cucurbita moschata (Rifu)	cmowgoB0253
Bhi08G000298	Cucurbita moschata (Rifu)	cmowgoB0586
Bhi08G000298	Cucurbita pepo (Zucchini)	cpewgoB0636
Bhi08G000298	Cucurbita pepo (Zucchini)	cpewgoB0708
Bhi08G000298	Bottle gourd (USVL1VR-Ls)	lsiwgoB093
Bhi08G000298	Bottle gourd (USVL1VR-Ls)	lsiwgoB259
Bhi08G000298	Melon (DHL92) v3.5.1	mewgoB145
Bhi08G000298	Watermelon (Charleston Gray)	wcgwgoB317
Bhi08G000298	Watermelon (97103) v2	wgowmbB469
Bhi08G000298	Watermelon (97103) v1	wgowmB522
Bhi08G000298	Silver-seed gourd	carwgoB0533
Bhi08G000298	Silver-seed gourd	carwgoB0860