Cp4.1LG02g13040 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG02g13040
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG02 : 11413093 .. 11413551 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCCCTAAATTTCCAATAATTGCAAAATGCCCCCTCTCTTACTCTAGAAGCCTTCCTAAACAAGCTAATGTAAGGGCGAAATACCCAATTCGCCCTTTTTTTCCCTATTTAAGCTTCCTGATTCATTTCTAATTCAATATTCTCATAATTCCCCAATTTCCATCTTTTCAGACCATCTCCAGCGCCGCCTCCTCCCACCGCTACTGCAACTTCTTACTCCTCTTAACTCTACTTCCATCAATGGATTCCAAAGAACCGAAGCAGCGATTCTCAGAGCTGCCGCCGAGAAGAGGTAAGATCCTGATCGGGATCTTCAAAAGCATCTTCAGAACTGTTAAACCGATGCCGGAAGGATTCGAAAGTGATCGGAGAAAAAACGAATCCCTAACTTCGTCTCCGATCACTCCGGCTACGAATTCCAGTGGCTACAACTCGGAAGTTCAGTCCGAGTCATGA

mRNA sequence

ATGACCCCTAAATTTCCAATAATTGCAAAATGCCCCCTCTCTTACTCTAGAAGCCTTCCTAAACAAGCTAATACCATCTCCAGCGCCGCCTCCTCCCACCGCTACTGCAACTTCTTACTCCTCTTAACTCTACTTCCATCAATGGATTCCAAAGAACCGAAGCAGCGATTCTCAGAGCTGCCGCCGAGAAGAGGTAAGATCCTGATCGGGATCTTCAAAAGCATCTTCAGAACTGTTAAACCGATGCCGGAAGGATTCGAAAGTGATCGGAGAAAAAACGAATCCCTAACTTCGTCTCCGATCACTCCGGCTACGAATTCCAGTGGCTACAACTCGGAAGTTCAGTCCGAGTCATGA

Coding sequence (CDS)

ATGACCCCTAAATTTCCAATAATTGCAAAATGCCCCCTCTCTTACTCTAGAAGCCTTCCTAAACAAGCTAATACCATCTCCAGCGCCGCCTCCTCCCACCGCTACTGCAACTTCTTACTCCTCTTAACTCTACTTCCATCAATGGATTCCAAAGAACCGAAGCAGCGATTCTCAGAGCTGCCGCCGAGAAGAGGTAAGATCCTGATCGGGATCTTCAAAAGCATCTTCAGAACTGTTAAACCGATGCCGGAAGGATTCGAAAGTGATCGGAGAAAAAACGAATCCCTAACTTCGTCTCCGATCACTCCGGCTACGAATTCCAGTGGCTACAACTCGGAAGTTCAGTCCGAGTCATGA

Protein sequence

MTPKFPIIAKCPLSYSRSLPKQANTISSAASSHRYCNFLLLLTLLPSMDSKEPKQRFSELPPRRGKILIGIFKSIFRTVKPMPEGFESDRRKNESLTSSPITPATNSSGYNSEVQSES
Homology
[Close]
BLAST of Cp4.1LG02g13040 vs. TrEMBL
Match: A0A0A0LV79_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G077190 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.9e-11
Identity = 41/72 (56.94%), Postives = 52/72 (72.22%), Query Frame = 1 

Query: 51  KEPKQRFSELPPRRGKILIGIFKSIFRTVKPMPEGFESDRRKNE----SLTSSPITPATN 110
           K+P++R +E PPRRG I I IF+SIFRTVK +PEGF   RR++E    + TS+  TPA  
Sbjct: 5   KDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETPTSTSTSTSTTPAPG 64

Query: 111 SSGYNSEVQSES 119
           +SGYNSE Q ES
Sbjct: 65  TSGYNSEAQPES 76

[Close]
BLAST of Cp4.1LG02g13040 vs. NCBI nr
Match: gi|700209621|gb|KGN64717.1| (hypothetical protein Csa_1G077190 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 4.1e-11
Identity = 41/72 (56.94%), Postives = 52/72 (72.22%), Query Frame = 1 

Query: 51  KEPKQRFSELPPRRGKILIGIFKSIFRTVKPMPEGFESDRRKNE----SLTSSPITPATN 110
           K+P++R +E PPRRG I I IF+SIFRTVK +PEGF   RR++E    + TS+  TPA  
Sbjct: 5   KDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETPTSTSTSTSTTPAPG 64

Query: 111 SSGYNSEVQSES 119
           +SGYNSE Q ES
Sbjct: 65  TSGYNSEAQPES 76

The following BLAST results are available for this feature:
BLAST of Cp4.1LG02g13040 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG02g13040 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LV79_CUCSA2.9e-1156.94Uncharacterized protein OS=Cucumis sativus GN=Csa_1G077190 PE=4 SV=1[more]
BLAST of Cp4.1LG02g13040 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG02g13040 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209621|gb|KGN64717.1|4.1e-1156.94hypothetical protein Csa_1G077190 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG02g13040.1Cp4.1LG02g13040.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG02g13040Cla008296Watermelon (97103) v1cpewmB548
Cp4.1LG02g13040MELO3C026846Melon (DHL92) v3.5.1cpemeB490
Cp4.1LG02g13040ClCG03G002060Watermelon (Charleston Gray)cpewcgB500
Cp4.1LG02g13040CSPI01G12520Wild cucumber (PI 183967)cpecpiB530
Cp4.1LG02g13040MELO3C026846.2Melon (DHL92) v3.6.1cpemedB581
Cp4.1LG02g13040CsaV3_1G012710Cucumber (Chinese Long) v3cpecucB0657
Cp4.1LG02g13040Bhi08G000298Wax gourdcpewgoB0704
Cp4.1LG02g13040CsGy1G012550Cucumber (Gy14) v2cgybcpeB090
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG02g13040Silver-seed gourdcarcpeB0427
Cp4.1LG02g13040Silver-seed gourdcarcpeB0471
Cp4.1LG02g13040Silver-seed gourdcarcpeB0472
Cp4.1LG02g13040Silver-seed gourdcarcpeB0622
Cp4.1LG02g13040Silver-seed gourdcarcpeB1023
Cp4.1LG02g13040Cucumber (Chinese Long) v3cpecucB0725
Cp4.1LG02g13040Wax gourdcpewgoB0691
Cp4.1LG02g13040Wax gourdcpewgoB0695
Cp4.1LG02g13040Wax gourdcpewgoB0708
Cp4.1LG02g13040Cucurbita pepo (Zucchini)cpecpeB299
Cp4.1LG02g13040Cucurbita pepo (Zucchini)cpecpeB300
Cp4.1LG02g13040Cucurbita pepo (Zucchini)cpecpeB432
Cp4.1LG02g13040Cucurbita pepo (Zucchini)cpecpeB457
Cp4.1LG02g13040Cucurbita pepo (Zucchini)cpecpeB458
Cp4.1LG02g13040Cucurbita maxima (Rimu)cmacpeB237
Cp4.1LG02g13040Cucurbita maxima (Rimu)cmacpeB491
Cp4.1LG02g13040Cucurbita maxima (Rimu)cmacpeB637
Cp4.1LG02g13040Cucurbita moschata (Rifu)cmocpeB205
Cp4.1LG02g13040Cucurbita moschata (Rifu)cmocpeB449
Cp4.1LG02g13040Cucurbita moschata (Rifu)cmocpeB587
Cp4.1LG02g13040Bottle gourd (USVL1VR-Ls)cpelsiB435
Cp4.1LG02g13040Bottle gourd (USVL1VR-Ls)cpelsiB440
Cp4.1LG02g13040Watermelon (Charleston Gray)cpewcgB498
Cp4.1LG02g13040Watermelon (97103) v1cpewmB580
Cp4.1LG02g13040Cucumber (Gy14) v2cgybcpeB824
Cp4.1LG02g13040Melon (DHL92) v3.6.1cpemedB578