CsGy1G012550 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G012550
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr1 : 7971456 .. 7971935 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCCTTAAAGTTTAAAACATTGTAAAAAGTATCCACACTCTTAAAACACTGTAGAACTCTTGTTGAACAAGCCAAGATATGTAAAGGCATTTTCTTTCTCTTTAAAAGCCCATTTCATTTTCTTTAATTTCCCAATTTCCTAAGGTTCAAACAAGCTCAACCGCTGCCGTCAAATCCCCACATTCTCGGCCGCCTTCTTACTCCTTCACTCAATTTCCATTTCTTCCACCTATTCCCTCCATTTCAATGAATTCCATCAAGGACCCGAGGAAGCGGCAGGCGGAATTCCCGCCTCGACGGGGTTTGATCAAGATCAAGATCTTCCGGAGCATTTTCAGGACGGTCAAATCCATACCGGAAGGATTCGCAAGAAGCCGGCGGGAAGACGAAACTCCAACTTCCACTTCCACTTCAACTTCGACAACGCCGGCTCCAGGTACTAGCGGGTATAACTCGGAAGCTCAGCCCGAGTCATGA

mRNA sequence

ATGACCCTTAAAGTTCAAACAAGCTCAACCGCTGCCGTCAAATCCCCACATTCTCGGCCGCCTTCTTACTCCTTCACTCAATTTCCATTTCTTCCACCTATTCCCTCCATTTCAATGAATTCCATCAAGGACCCGAGGAAGCGGCAGGCGGAATTCCCGCCTCGACGGGGTTTGATCAAGATCAAGATCTTCCGGAGCATTTTCAGGACGGTCAAATCCATACCGGAAGGATTCGCAAGAAGCCGGCGGGAAGACGAAACTCCAACTTCCACTTCCACTTCAACTTCGACAACGCCGGCTCCAGGTACTAGCGGGTATAACTCGGAAGCTCAGCCCGAGTCATGA

Coding sequence (CDS)

ATGACCCTTAAAGTTCAAACAAGCTCAACCGCTGCCGTCAAATCCCCACATTCTCGGCCGCCTTCTTACTCCTTCACTCAATTTCCATTTCTTCCACCTATTCCCTCCATTTCAATGAATTCCATCAAGGACCCGAGGAAGCGGCAGGCGGAATTCCCGCCTCGACGGGGTTTGATCAAGATCAAGATCTTCCGGAGCATTTTCAGGACGGTCAAATCCATACCGGAAGGATTCGCAAGAAGCCGGCGGGAAGACGAAACTCCAACTTCCACTTCCACTTCAACTTCGACAACGCCGGCTCCAGGTACTAGCGGGTATAACTCGGAAGCTCAGCCCGAGTCATGA

Protein sequence

MTLKVQTSSTAAVKSPHSRPPSYSFTQFPFLPPIPSISMNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETPTSTSTSTSTTPAPGTSGYNSEAQPES

Homology

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BLAST of CsGy1G012550 vs. NCBI nr
Match: KGN64717.1 (hypothetical protein Csa_1G077190 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 1.0e-18
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 39  MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSXXXXXXXXXXXXXXXXX 98
           MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSXXXXXXXXXXXXXXXXX
Sbjct: 1   MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSXXXXXXXXXXXXXXXXX 60

Query: 99  XXXXXSGYNSEAQPES 115
           XXXXXSGYNSEAQPES
Sbjct: 61  XXXXXSGYNSEAQPES 76

[Close]

BLAST of CsGy1G012550 vs. TrEMBL
Match: tr|A0A0A0LV79|A0A0A0LV79_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077190 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 6.7e-19
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 39  MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSXXXXXXXXXXXXXXXXX 98
           MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSXXXXXXXXXXXXXXXXX
Sbjct: 1   MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSXXXXXXXXXXXXXXXXX 60

Query: 99  XXXXXSGYNSEAQPES 115
           XXXXXSGYNSEAQPES
Sbjct: 61  XXXXXSGYNSEAQPES 76

The following BLAST results are available for this feature:

BLAST of CsGy1G012550 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64717.1	1.0e-18	100.00	hypothetical protein Csa_1G077190 [Cucumis sativus]	[more]

BLAST of CsGy1G012550 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy1G012550 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G012550 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LV79\|A0A0A0LV79_CUCSA	6.7e-19	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077190 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G012550.1	CsGy1G012550.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..114
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..114

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G012550	Cla008296	Watermelon (97103) v1	cgybwmB012
CsGy1G012550	Csa1G077190	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G012550	MELO3C026846	Melon (DHL92) v3.5.1	cgybmeB010
CsGy1G012550	ClCG03G002060	Watermelon (Charleston Gray)	cgybwcgB035
CsGy1G012550	CSPI01G12520	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G012550	Cp4.1LG20g08930	Cucurbita pepo (Zucchini)	cgybcpeB084
CsGy1G012550	Cp4.1LG02g13040	Cucurbita pepo (Zucchini)	cgybcpeB090
CsGy1G012550	MELO3C026846.2	Melon (DHL92) v3.6.1	cgybmedB009
CsGy1G012550	CsaV3_1G012710	Cucumber (Chinese Long) v3	cgybcucB002
CsGy1G012550	Cla97C03G053060	Watermelon (97103) v2	cgybwmbB034
CsGy1G012550	Bhi08G000298	Wax gourd	cgybwgoB039

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G012550	Bottle gourd (USVL1VR-Ls)	cgyblsiB020