CSPI01G12520 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G12520
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 7968076 .. 7968919 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCTTCTTTCTCTTTAAAAGCCCATTTCATTTTCTTTAATTTCCCCATTTCCTAAGGTTCAAACAAGCTCAACCGCTGCCGTCAAATCCCCACATTCTCGGCCGCCTTCTTACTCCTTCACTCAATTTCCATTTCTTCCACCTATTCCCTCCATTTCAATGAATTCCATCAAGGACCCGAGGAAGCGGCAGGCGGAATTCCCGCCTCGACGGGGTTTGATCAAGATCAAGATCTTCCGGAGCATTTTCAGGACGGTCAAATCCATACCGGAAGGATTCGCAAGAAGCCGGCGGGAAGACGAAACTCCAACTTCCACTTCCACTTCCACTTCCACTTCAACTTCGACAACGCCGGCTCCAGGTACTAGCGGGTATAACTCGGAAGCTCAGCCCGAGTCATGAGGAAGAGTTCCTGAGTCGATCGGAATCATGAACTTGCTCTTTGAATTTGTGGCCAATTTTTTATCGGGGTCTCGCTACCTACCTATGAACTTCACACCATAACCATAAACTTTTCCCTTTCTTCTTCTTCTTTAAAATTCTTTTTGTTTTTATTTGTTAAATGTATAATTCTTGAGACCCCCGTTTCTGTTGATTTAGGCTTAGATTGTAATTAATTTTAATTACACTATAATTTTTTTACACAACTTGAGTGGATCTTGTCTCTTGTTATGTGGATATTGTATTTGGAATTTTGGGAAGAATGTTTGAAAATTACCCATTGAATTAGATCGAGCTAAAAACACTCTCTGTTCAGTTCAAAACGAGATCGCAAGGGTGAAAAACAGTGTATTTTGAATTCAAAACTGTGAAACGGAATGCAATTTGTCATTATAAATTGGGCC

mRNA sequence

ATGAATTCCATCAAGGACCCGAGGAAGCGGCAGGCGGAATTCCCGCCTCGACGGGGTTTGATCAAGATCAAGATCTTCCGGAGCATTTTCAGGACGGTCAAATCCATACCGGAAGGATTCGCAAGAAGCCGGCGGGAAGACGAAACTCCAACTTCCACTTCCACTTCCACTTCCACTTCAACTTCGACAACGCCGGCTCCAGGTACTAGCGGGTATAACTCGGAAGCTCAGCCCGAGTCATGA

Coding sequence (CDS)

ATGAATTCCATCAAGGACCCGAGGAAGCGGCAGGCGGAATTCCCGCCTCGACGGGGTTTGATCAAGATCAAGATCTTCCGGAGCATTTTCAGGACGGTCAAATCCATACCGGAAGGATTCGCAAGAAGCCGGCGGGAAGACGAAACTCCAACTTCCACTTCCACTTCCACTTCCACTTCAACTTCGACAACGCCGGCTCCAGGTACTAGCGGGTATAACTCGGAAGCTCAGCCCGAGTCATGA
Homology
[Close]
BLAST of CSPI01G12520 vs. TrEMBL
Match: A0A0A0LV79_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G077190 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 4.2e-30
Identity = 76/80 (95.00%), Postives = 76/80 (95.00%), Query Frame = 1 

Query: 1  MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETPTSTSTSTSTS 60
          MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETP    TSTSTS
Sbjct: 1  MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETP----TSTSTS 60

Query: 61 TSTTPAPGTSGYNSEAQPES 81
          TSTTPAPGTSGYNSEAQPES
Sbjct: 61 TSTTPAPGTSGYNSEAQPES 76

[Close]
BLAST of CSPI01G12520 vs. NCBI nr
Match: gi|700209621|gb|KGN64717.1| (hypothetical protein Csa_1G077190 [Cucumis sativus])

HSP 1 Score: 138.3 bits (347), Expect = 6.1e-30
Identity = 76/80 (95.00%), Postives = 76/80 (95.00%), Query Frame = 1 

Query: 1  MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETPTSTSTSTSTS 60
          MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETP    TSTSTS
Sbjct: 1  MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETP----TSTSTS 60

Query: 61 TSTTPAPGTSGYNSEAQPES 81
          TSTTPAPGTSGYNSEAQPES
Sbjct: 61 TSTTPAPGTSGYNSEAQPES 76

The following BLAST results are available for this feature:
BLAST of CSPI01G12520 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G12520 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LV79_CUCSA4.2e-3095.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G077190 PE=4 SV=1[more]
BLAST of CSPI01G12520 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G12520 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209621|gb|KGN64717.1|6.1e-3095.00hypothetical protein Csa_1G077190 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G12520.1CSPI01G12520.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G12520Cla008296Watermelon (97103) v1cpiwmB012
CSPI01G12520Csa1G077190Cucumber (Chinese Long) v2cpicuB000
CSPI01G12520MELO3C026846Melon (DHL92) v3.5.1cpimeB011
CSPI01G12520ClCG03G002060Watermelon (Charleston Gray)cpiwcgB040
CSPI01G12520MELO3C026846.2Melon (DHL92) v3.6.1cpimedB011
CSPI01G12520CsaV3_1G012710Cucumber (Chinese Long) v3cpicucB001
CSPI01G12520Cla97C03G053060Watermelon (97103) v2cpiwmbB034
CSPI01G12520Bhi08G000298Wax gourdcpiwgoB042
CSPI01G12520Cucsa.127070Cucumber (Gy14) v1cgycpiB172
CSPI01G12520Cp4.1LG02g13040Cucurbita pepo (Zucchini)cpecpiB530
CSPI01G12520CsGy1G012550Cucumber (Gy14) v2cgybcpiB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G12520Bottle gourd (USVL1VR-Ls)cpilsiB023