CsaV3_1G012710 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G012710
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1 : 7972373 .. 7973260 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAACAAGCCAAGATATGTAAAGGCATTTTCTTTCTCTTTAAAAGCCCATTTCATTTTCTTTAATTTCCCAATTTCCTAAGGTTCAAACAAGCTCAACCGCTGCCGTCAAATCCCCACATTCTCGGCCGCCTTCTTACTCCTTCACTCAATTTCCATTTCTTCCACCTATTCCCTCCATTTCAATGAATTCCATCAAGGACCCGAGGAAGCGGCAGGCGGAATTCCCGCCTCGACGGGGTTTGATCAAGATCAAGATCTTCCGGAGCATTTTCAGGACGGTCAAATCCATACCGGAAGGATTCGCAAGAAGCCGGCGGGAAGACGAAACTCCAACTTCCACTTCCACTTCCACTTCCACTTCCACTTCAACTTCGACAACGCCGGCTCCAGGTACTAGCGGGTATAACTCGGAAGCTCAGCCCGAGTCATGAGGAAGAGTTCCTGAGTCGATCGGAATCATGAACTTGCTCGTTGAATTTGTGGCCAATTTTTTATCGGGGTCTCGCTACCTACCTATGAACTTCACACCATAACGATAAACTTTTCCCTTTCTTCTTCTTCTTTAAAATTCTTTTTGTTTTTATTTGTTAAATGTATAATTCTTGAGACCCTCGTTTCTGTTGATTTAGGCTTAGATTGTAATTAATTTTAATTACACTATAATTTTTTTACACAACTTGAGTGGATCTTGTCTCTTGTTATGTGGATATTGTATTTGGAATTTTGGGAAGAATGTTTGAAAATTACCCATTGAATTAGATCGAGCTTAAAACACTCTCTGTTCAGTTCAAAACGAGATCGCAAGGGTGAAAAACAGTGTATTTTGAATTCAAAACTGTGAAACGGAATGCAATTTGTCATTATAAATTGGGCCTTAAACATTGCATC

mRNA sequence

ATGAATTCCATCAAGGACCCGAGGAAGCGGCAGGCGGAATTCCCGCCTCGACGGGGTTTGATCAAGATCAAGATCTTCCGGAGCATTTTCAGGACGGTCAAATCCATACCGGAAGGATTCGCAAGAAGCCGGCGGGAAGACGAAACTCCAACTTCCACTTCCACTTCCACTTCCACTTCCACTTCAACTTCGACAACGCCGGCTCCAGGTACTAGCGGGTATAACTCGGAAGCTCAGCCCGAGTCATGA

Coding sequence (CDS)

ATGAATTCCATCAAGGACCCGAGGAAGCGGCAGGCGGAATTCCCGCCTCGACGGGGTTTGATCAAGATCAAGATCTTCCGGAGCATTTTCAGGACGGTCAAATCCATACCGGAAGGATTCGCAAGAAGCCGGCGGGAAGACGAAACTCCAACTTCCACTTCCACTTCCACTTCCACTTCCACTTCAACTTCGACAACGCCGGCTCCAGGTACTAGCGGGTATAACTCGGAAGCTCAGCCCGAGTCATGA

Protein sequence

MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETPTSTSTSTSTSTSTSTTPAPGTSGYNSEAQPES

Homology

[Close]

BLAST of CsaV3_1G012710 vs. NCBI nr
Match: KGN64717.1 (hypothetical protein Csa_1G077190 [Cucumis sativus])

HSP 1 Score: 95.9 bits (237), Expect = 6.9e-17
Identity = 76/82 (92.68%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 1  MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSXXXXXXXXXXXXXXXXX 60
          MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARS      XXXXXXXXXXX
Sbjct: 1  MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARS------XXXXXXXXXXX 60

Query: 61 XXXXXXXXXXXSGYNSEAQPES 83
          XXXXXXXXXXXSGYNSEAQPES
Sbjct: 61 XXXXXXXXXXXSGYNSEAQPES 76

[Close]

BLAST of CsaV3_1G012710 vs. TrEMBL
Match: tr|A0A0A0LV79|A0A0A0LV79_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077190 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 4.5e-17
Identity = 76/82 (92.68%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 1  MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSXXXXXXXXXXXXXXXXX 60
          MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARS      XXXXXXXXXXX
Sbjct: 1  MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARS------XXXXXXXXXXX 60

Query: 61 XXXXXXXXXXXSGYNSEAQPES 83
          XXXXXXXXXXXSGYNSEAQPES
Sbjct: 61 XXXXXXXXXXXSGYNSEAQPES 76

The following BLAST results are available for this feature:

BLAST of CsaV3_1G012710 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64717.1	6.9e-17	92.68	hypothetical protein Csa_1G077190 [Cucumis sativus]	[more]

BLAST of CsaV3_1G012710 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G012710 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G012710 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LV79\|A0A0A0LV79_CUCSA	4.5e-17	92.68	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077190 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G012710.1	CsaV3_1G012710.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..82

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G012710	CSPI01G12520	Wild cucumber (PI 183967)	cpicucB001
CsaV3_1G012710	Cucsa.127070	Cucumber (Gy14) v1	cgycucB174
CsaV3_1G012710	Cp4.1LG02g13040	Cucurbita pepo (Zucchini)	cpecucB0657
CsaV3_1G012710	CsGy1G012550	Cucumber (Gy14) v2	cgybcucB002
CsaV3_1G012710	Cla008296	Watermelon (97103) v1	cucwmB015
CsaV3_1G012710	MELO3C026846	Melon (DHL92) v3.5.1	cucmeB010
CsaV3_1G012710	ClCG03G002060	Watermelon (Charleston Gray)	cucwcgB040
CsaV3_1G012710	MELO3C026846.2	Melon (DHL92) v3.6.1	cucmedB009
CsaV3_1G012710	Cla97C03G053060	Watermelon (97103) v2	cucwmbB032
CsaV3_1G012710	Bhi08G000298	Wax gourd	cucwgoB045

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None