Cucsa.127070 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.127070
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold01017 : 880445 .. 881139 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTCAAACAAGCTCAACCGCTGCCGTCAAATCCCCACATTCTCGGCCGCCTTCTTACTCCTTCACTCAATTTCCATTTCTTCCACCTATTCCCTCCATTTCAATGAATTCCATCAAGGACCCGAGGAAGCGGCAGGCGGAATTCCCGCCTCGACGGGGTTTGATCAAGATCAAGATCTTCCGGAGCATTTTCAGGACGGTCAAATCCATACCGGAAGGATTCGCAAGAAGCCGGCGGGAAGACGAAACTCCAACTTCCACTTCCACTTCCACTTCCACTTCCACTTCAACTTCGACAACGCCGGCTCCAGGTACTAGCGGGTATAACTCGGAAGCTCAGCCCGAGTCATGAGGAAGAGTTCCTGAGTCGATCGGAATCATGAACTTGCTCGTTGAATTTGTGGCCAATTTTTTATCGGGGTCTCGCTACCTACCTATGAACTTCACACCATAACGATAAACTTTTCCCTTTCTTCTTCTTCTTTAAAATTCTTTTTGTTTTtATTTGTTAAATGTATAATTCTTGAGACCCTCGTTTCTGTTGATTTAGGCTTAGATTGTAATTAATTTTAATTACACTATAATTTTTTtACACAACTTGAGTGGATCTTGTCTCTTGTTATGTGGATATTGTATTTGGAATTTTGGGAAGAATGTTTGAAAATTACCCATTGAATTAGATCGAGCTTAAAACAC

mRNA sequence

GTTCAAACAAGCTCAACCGCTGCCGTCAAATCCCCACATTCTCGGCCGCCTTCTTACTCCTTCACTCAATTTCCATTTCTTCCACCTATTCCCTCCATTTCAATGAATTCCATCAAGGACCCGAGGAAGCGGCAGGCGGAATTCCCGCCTCGACGGGGTTTGATCAAGATCAAGATCTTCCGGAGCATTTTCAGGACGGTCAAATCCATACCGGAAGGATTCGCAAGAAGCCGGCGGGAAGACGAAACTCCAACTTCCACTTCCACTTCCACTTCCACTTCCACTTCAACTTCGACAACGCCGGCTCCAGGTACTAGCGGGTATAACTCGGAAGCTCAGCCCGAGTCATGAGGAAGAGTTCCTGAGTCGATCGGAATCATGAACTTGCTCGTTGAATTTGTGGCCAATTTTTTATCGGGGTCTCGCTACCTACCTATGAACTTCACACCATAACGATAAACTTTTCCCTTTCTTCTTCTTCTTTAAAATTCTTTTTGTTTTTATTTGTTAAATGTATAATTCTTGAGACCCTCGTTTCTGTTGATTTAGGCTTAGATTGTAATTAATTTTAATTACACTATAATTTTTTTACACAACTTGAGTGGATCTTGTCTCTTGTTATGTGGATATTGTATTTGGAATTTTGGGAAGAATGTTTGAAAATTACCCATTGAATTAGATCGAGCTTAAAACAC

Coding sequence (CDS)

ATGAATTCCATCAAGGACCCGAGGAAGCGGCAGGCGGAATTCCCGCCTCGACGGGGTTTGATCAAGATCAAGATCTTCCGGAGCATTTTCAGGACGGTCAAATCCATACCGGAAGGATTCGCAAGAAGCCGGCGGGAAGACGAAACTCCAACTTCCACTTCCACTTCCACTTCCACTTCCACTTCAACTTCGACAACGCCGGCTCCAGGTACTAGCGGGTATAACTCGGAAGCTCAGCCCGAGTCATGA

Protein sequence

MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETPTSTSTSTSTSTSTSTTPAPGTSGYNSEAQPES*
Homology
[Close]
BLAST of Cucsa.127070 vs. TrEMBL
Match: A0A0A0LV79_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G077190 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 9.3e-33
Identity = 76/82 (92.68%), Postives = 76/82 (92.68%), Query Frame = 1 

Query: 1  MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETPTSTSTSTSTS 60
          MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETP      TSTS
Sbjct: 1  MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETP------TSTS 60

Query: 61 TSTSTTPAPGTSGYNSEAQPES 83
          TSTSTTPAPGTSGYNSEAQPES
Sbjct: 61 TSTSTTPAPGTSGYNSEAQPES 76

[Close]
BLAST of Cucsa.127070 vs. NCBI nr
Match: gi|700209621|gb|KGN64717.1| (hypothetical protein Csa_1G077190 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 1.3e-32
Identity = 76/82 (92.68%), Postives = 76/82 (92.68%), Query Frame = 1 

Query: 1  MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETPTSTSTSTSTS 60
          MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETP      TSTS
Sbjct: 1  MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETP------TSTS 60

Query: 61 TSTSTTPAPGTSGYNSEAQPES 83
          TSTSTTPAPGTSGYNSEAQPES
Sbjct: 61 TSTSTTPAPGTSGYNSEAQPES 76

The following BLAST results are available for this feature:
BLAST of Cucsa.127070 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LV79_CUCSA9.3e-3392.68Uncharacterized protein OS=Cucumis sativus GN=Csa_1G077190 PE=4 SV=1[more]
BLAST of Cucsa.127070 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209621|gb|KGN64717.1|1.3e-3292.68hypothetical protein Csa_1G077190 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.127070.1Cucsa.127070.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.127070Cla008296Watermelon (97103) v1cgywmB206
Cucsa.127070Csa1G077190Cucumber (Chinese Long) v2cgycuB170
Cucsa.127070MELO3C026846Melon (DHL92) v3.5.1cgymeB197
Cucsa.127070ClCG03G002060Watermelon (Charleston Gray)cgywcgB204
Cucsa.127070CSPI01G12520Wild cucumber (PI 183967)cgycpiB172
Cucsa.127070MELO3C026846.2Melon (DHL92) v3.6.1cgymedB196
Cucsa.127070CsaV3_1G012710Cucumber (Chinese Long) v3cgycucB174
Cucsa.127070Cla97C03G053060Watermelon (97103) v2cgywmbB201
Cucsa.127070Bhi08G000298Wax gourdcgywgoB234
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.127070Bottle gourd (USVL1VR-Ls)cgylsiB195