Cucsa.127070.1 (mRNA) Cucumber (Gy14) v1

Overview
NameCucsa.127070.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold01017 : 880445 .. 881139 (+)
Sequence length695
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTCAAACAAGCTCAACCGCTGCCGTCAAATCCCCACATTCTCGGCCGCCTTCTTACTCCTTCACTCAATTTCCATTTCTTCCACCTATTCCCTCCATTTCAATGAATTCCATCAAGGACCCGAGGAAGCGGCAGGCGGAATTCCCGCCTCGACGGGGTTTGATCAAGATCAAGATCTTCCGGAGCATTTTCAGGACGGTCAAATCCATACCGGAAGGATTCGCAAGAAGCCGGCGGGAAGACGAAACTCCAACTTCCACTTCCACTTCCACTTCCACTTCCACTTCAACTTCGACAACGCCGGCTCCAGGTACTAGCGGGTATAACTCGGAAGCTCAGCCCGAGTCATGAGGAAGAGTTCCTGAGTCGATCGGAATCATGAACTTGCTCGTTGAATTTGTGGCCAATTTTTTATCGGGGTCTCGCTACCTACCTATGAACTTCACACCATAACGATAAACTTTTCCCTTTCTTCTTCTTCTTTAAAATTCTTTTTGTTTTtATTTGTTAAATGTATAATTCTTGAGACCCTCGTTTCTGTTGATTTAGGCTTAGATTGTAATTAATTTTAATTACACTATAATTTTTTtACACAACTTGAGTGGATCTTGTCTCTTGTTATGTGGATATTGTATTTGGAATTTTGGGAAGAATGTTTGAAAATTACCCATTGAATTAGATCGAGCTTAAAACAC

mRNA sequence

GTTCAAACAAGCTCAACCGCTGCCGTCAAATCCCCACATTCTCGGCCGCCTTCTTACTCCTTCACTCAATTTCCATTTCTTCCACCTATTCCCTCCATTTCAATGAATTCCATCAAGGACCCGAGGAAGCGGCAGGCGGAATTCCCGCCTCGACGGGGTTTGATCAAGATCAAGATCTTCCGGAGCATTTTCAGGACGGTCAAATCCATACCGGAAGGATTCGCAAGAAGCCGGCGGGAAGACGAAACTCCAACTTCCACTTCCACTTCCACTTCCACTTCCACTTCAACTTCGACAACGCCGGCTCCAGGTACTAGCGGGTATAACTCGGAAGCTCAGCCCGAGTCATGAGGAAGAGTTCCTGAGTCGATCGGAATCATGAACTTGCTCGTTGAATTTGTGGCCAATTTTTTATCGGGGTCTCGCTACCTACCTATGAACTTCACACCATAACGATAAACTTTTCCCTTTCTTCTTCTTCTTTAAAATTCTTTTTGTTTTTATTTGTTAAATGTATAATTCTTGAGACCCTCGTTTCTGTTGATTTAGGCTTAGATTGTAATTAATTTTAATTACACTATAATTTTTTTACACAACTTGAGTGGATCTTGTCTCTTGTTATGTGGATATTGTATTTGGAATTTTGGGAAGAATGTTTGAAAATTACCCATTGAATTAGATCGAGCTTAAAACAC

Coding sequence (CDS)

ATGAATTCCATCAAGGACCCGAGGAAGCGGCAGGCGGAATTCCCGCCTCGACGGGGTTTGATCAAGATCAAGATCTTCCGGAGCATTTTCAGGACGGTCAAATCCATACCGGAAGGATTCGCAAGAAGCCGGCGGGAAGACGAAACTCCAACTTCCACTTCCACTTCCACTTCCACTTCCACTTCAACTTCGACAACGCCGGCTCCAGGTACTAGCGGGTATAACTCGGAAGCTCAGCCCGAGTCATGA

Protein sequence

MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETPTSTSTSTSTSTSTSTTPAPGTSGYNSEAQPES*
Homology
[Close]
BLAST of Cucsa.127070.1 vs. TrEMBL
Match: A0A0A0LV79_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G077190 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 9.3e-33
Identity = 76/82 (92.68%), Postives = 76/82 (92.68%), Query Frame = 1 

Query: 1  MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETPTSTSTSTSTS 60
          MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETP      TSTS
Sbjct: 1  MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETP------TSTS 60

Query: 61 TSTSTTPAPGTSGYNSEAQPES 83
          TSTSTTPAPGTSGYNSEAQPES
Sbjct: 61 TSTSTTPAPGTSGYNSEAQPES 76

[Close]
BLAST of Cucsa.127070.1 vs. NCBI nr
Match: gi|700209621|gb|KGN64717.1| (hypothetical protein Csa_1G077190 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 1.3e-32
Identity = 76/82 (92.68%), Postives = 76/82 (92.68%), Query Frame = 1 

Query: 1  MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETPTSTSTSTSTS 60
          MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETP      TSTS
Sbjct: 1  MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETP------TSTS 60

Query: 61 TSTSTTPAPGTSGYNSEAQPES 83
          TSTSTTPAPGTSGYNSEAQPES
Sbjct: 61 TSTSTTPAPGTSGYNSEAQPES 76

The following BLAST results are available for this feature:
BLAST of Cucsa.127070.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LV79_CUCSA9.3e-3392.68Uncharacterized protein OS=Cucumis sativus GN=Csa_1G077190 PE=4 SV=1[more]
BLAST of Cucsa.127070.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209621|gb|KGN64717.1|1.3e-3292.68hypothetical protein Csa_1G077190 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsa.127070Cucsa.127070gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsa.127070.1Cucsa.127070.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsa.127070.1.five_prime_UTR.1Cucsa.127070.1.five_prime_UTR.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsa.127070.1.CDS.1Cucsa.127070.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsa.127070.1.three_prime_UTR.1Cucsa.127070.1.three_prime_UTR.1three_prime_UTR