Csa1G077190 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G077190
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 7911554 .. 7912127 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCAAACAAGCTCAACCGCTGCCGTCAAATCCCCACATTCTCGGCCGCCTTCTTACTCCTTCACTCAATTTCCATTTCTTCCACCTATTCCCTCCATTTCAATGAATTCCATCAAGGACCCGAGGAAGCGGCAGGCGGAATTCCCGCCTCGACGGGGTTTGATCAAGATCAAGATCTTCCGGAGCATTTTCAGGACGGTCAAATCCATACCGGAAGGATTCGCAAGAAGCCGGCGGGAAGACGAAACTCCAACTTCCACTTCCACTTCCACTTCCACAACGCCGGCTCCAGGTACTAGCGGGTATAACTCGGAAGCTCAGCCCGAGTCATGAGGAAGAGTTCCTGAGTCGATCGGAATCATGAACTTGCTCGTTGAATTTGTGGCCAATTTTTTATCGGGGTCTCGCTACCTACCTATGAACTTCACACCATAACGATAAACTTTTCCCTTTCTTCTTCTTCTTTAAAATTCTTTTTGTTTTTATTTGTTAAATGTATAATTCTTGAGACCCTCGTTTCTGTTGATTTAGGCTTAGATTGTAATTAATTTTAATTACACTATAATTTTTTTACAC

mRNA sequence

ATGAATTCCATCAAGGACCCGAGGAAGCGGCAGGCGGAATTCCCGCCTCGACGGGGTTTGATCAAGATCAAGATCTTCCGGAGCATTTTCAGGACGGTCAAATCCATACCGGAAGGATTCGCAAGAAGCCGGCGGGAAGACGAAACTCCAACTTCCACTTCCACTTCCACTTCCACAACGCCGGCTCCAGGTACTAGCGGGTATAACTCGGAAGCTCAGCCCGAGTCATGA

Coding sequence (CDS)

ATGAATTCCATCAAGGACCCGAGGAAGCGGCAGGCGGAATTCCCGCCTCGACGGGGTTTGATCAAGATCAAGATCTTCCGGAGCATTTTCAGGACGGTCAAATCCATACCGGAAGGATTCGCAAGAAGCCGGCGGGAAGACGAAACTCCAACTTCCACTTCCACTTCCACTTCCACAACGCCGGCTCCAGGTACTAGCGGGTATAACTCGGAAGCTCAGCCCGAGTCATGA

Protein sequence

MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETPTSTSTSTSTTPAPGTSGYNSEAQPES*
Homology
[Close]
BLAST of Csa1G077190 vs. TrEMBL
Match: A0A0A0LV79_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G077190 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 9.2e-35
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1 

Query: 1  MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETPTSTSTSTSTT 60
          MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETPTSTSTSTSTT
Sbjct: 1  MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETPTSTSTSTSTT 60

Query: 61 PAPGTSGYNSEAQPES 77
          PAPGTSGYNSEAQPES
Sbjct: 61 PAPGTSGYNSEAQPES 76

[Close]
BLAST of Csa1G077190 vs. NCBI nr
Match: gi|700209621|gb|KGN64717.1| (hypothetical protein Csa_1G077190 [Cucumis sativus])

HSP 1 Score: 153.7 bits (387), Expect = 1.3e-34
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1 

Query: 1  MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETPTSTSTSTSTT 60
          MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETPTSTSTSTSTT
Sbjct: 1  MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETPTSTSTSTSTT 60

Query: 61 PAPGTSGYNSEAQPES 77
          PAPGTSGYNSEAQPES
Sbjct: 61 PAPGTSGYNSEAQPES 76

The following BLAST results are available for this feature:
BLAST of Csa1G077190 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LV79_CUCSA9.2e-35100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G077190 PE=4 SV=1[more]
BLAST of Csa1G077190 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209621|gb|KGN64717.1|1.3e-34100.00hypothetical protein Csa_1G077190 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU130824cucumber EST collection version 3.0transcribed_cluster
CU165913cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G077190.1Csa1G077190.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU130824CU130824transcribed_cluster
CU165913CU165913transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G077190Cla008296Watermelon (97103) v1cuwmB010
Csa1G077190MELO3C026846Melon (DHL92) v3.5.1cumeB001
Csa1G077190ClCG03G002060Watermelon (Charleston Gray)cuwcgB037
Csa1G077190MELO3C026846.2Melon (DHL92) v3.6.1cumedB010
Csa1G077190Cla97C03G053060Watermelon (97103) v2cuwmbB034
Csa1G077190Bhi08G000298Wax gourdcuwgoB042
Csa1G077190CSPI01G12520Wild cucumber (PI 183967)cpicuB000
Csa1G077190Cucsa.127070Cucumber (Gy14) v1cgycuB170
Csa1G077190CsGy1G012550Cucumber (Gy14) v2cgybcuB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G077190Bottle gourd (USVL1VR-Ls)culsiB024