MELO3C020110.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C020110.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Nucleic acid-binding, OB-fold
Location	chr10 : 12841805 .. 12845294 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCTCTAGTCTTCTCCAATCTTTCATAGTTCACCCCCTCCCCTACGATCAGACGACGCCGGCGACTGTAACTCCGATCAGTCCAACCGCAATTTCCCTTTGTTTTGGACTAGGTTTAAAGGATTTTCCCTTTGTTTTTCTTATCCTTTTTTCTGTATGAGGAATGTTTCAACTGGTTTGACAGAACACACATATAAACCCAATTAATCTTAATAGAAGCCATTGGATAAACCCTATCTCTTCTCATCTCACTTCAGTTGCCCCACCGTAGGTCGCCACTGTTCTCATCTCCCATCACCGGCTGCCGGAGGCTCCCCAACCGGCGCTCTAACCTCGTCTCGTCACTTATTAGAAGTAGGGTTGAAGCCAAATCTCTGTCAAAGTATGAAAGGTGGAAGAAAGAACTTACAGAGGGCATCAGAGCATCATATCGCGAGCCTCGAAGATGGTCATAGCATTATGCTGGTTGTCTCAATTCGTGGTTCCAATCTAATTGAGGTATCTTTCTATTTCATCGATGATGCTCGCTCTCTCTAATTTTGTCAATTATTTACTTAGCAATCTTCTGCTTTTCCTATTGCCTATTGTGTTGCGTTAATCAACCCGAACGAAACAACGTCTTTAATTGCAGTTAATTATCCACCAATGTTATGTTTTCGAACGTAAAAATAGTAGGTTTCAATTCTTGCATGTTTGATTCTGGGGTTACATTGTGTATTTGAGATATTTGCTAGCGATTAAAATAAATGATTCTGATATGCTTGTTGTGTTGCAATTTCTTTGTAGAAGTCATCCTTTTAGTTAAGCGTTCATATGGGGGAAACCATAACCTCTGCAGTTTCTCTATTTCGGGTGCAATAATTTGTTCGTTTCTTTATTTTGTAGGAAACCAAGATGTCTATTATTTGTCAATTATATTAAGCGGGCTGCTTTGCTTTATATTGTATTTTGGACGATCTTTAATACCATTTGTTTTCCTTCTTCATCTCTAGGTAATGGATGCACAAGGTGGGAAATCACTGGCATTATTTCCTGCCAAGTTTCAAAAGAGTATGTGGATAAAACGAGGTATGTTCTATTAACTATTCTACTCAACTCATTATTCCCATCGCAATACACTGCCTTCCGAAGTAAGCAAGGTTCATTATTTCTCACTAAAAGCTGTTTCTTTATTAAAAAAGATCTAGAAAATCAAGAGATCTTCTACCGTAAAAAAAAATGATAGATGAAAACATAAGATCCCATTTTGCATTTGCCTCGCTCTGTATGTCAAGGTTTTACGTGGTATGAGCGTCTGGAAACTATGCTATTTCATTTTAGTGTTGTAGGAATTCATAAAGTGTGGCCGTTGACTGTAGTTATGGCGGTTTTTTCCCCTTTTTGTTAGTAGCTTTGACTATAGCCGTTGAAACATAGACATAAAGATTATTTTGTACTTTTTAAAAATAGAAATAACGGCTGTTTAAAGAATACATGGGCGCGCAAAAATCCAAGCCAACAAAAAGCAGGGGACCCCTCTACAAGACCCCAACTATTCAAATTCAAGTTAAAAGATATTTACAAAAGATCTTTGAAATCAAAGCCCAATAAGTAGTGTTTTGAAAGGCGAGGCTTAAGACATAAGGCACGTGCCTTCTGGCGCCTTCCACGAAGAGTTGAGACGCACCTAGGCGTGCCTCGTAGGGTCTTTATTTTTTTTATTTTAGATATACCTCCCTTATTACATTTTAATGTAAAATATTATATATTTATAATTTTTAAAACCTAATTCATCATTGAAAAAAAAGTTATGTTTCTTCTTCAAAAAACAGAGGAGAAAGTCTTGTTCTTTTTGTTTCCAGCCACCATTACTTTGCTACCGCATTGGGATATTTGTTTTTTCATTAAAGAAAAAAAAAAGAAGAGAAAGGCTTGAAGACAAACAAAAAACTCCACAAAACAGCAGCCAATATTTAAATCATTAGGAGTTTAGAATTCTATTAAATCTTATCTATCTTTTAGTTTCTGTACAAGTCTTATTTCTACTCATATATGTTTTGCTTGTGTAAATAAACATGTATAGTATATATACATATATTTTTATATGTAGTGCACCTCACGAAAAAATCTTGTGCCTTCTTCACCCAGGCTCCAGAGGTTCATTGTGTGTTTGTGCGCCTCGGGTATTTTAAAACACTGCCAATGAGAAACATGAAATCTAAGAGGCCTTTGACCCATATAAATTAATTTTTTATTTTTTAAAAATATTTTAGGAATCTGTTAAAGTTAAAAGTTGACTTGTTAGATACTATTAAAGTTTAGGAACATTTTAGACATTTTAAAGTTCCTTGACATTTTTTATATAGACTTGAAAGCCTAGGGACTTAACCTATAATTTAACCTAACTATAATTATGCCCCAATAAAAATCACTACTCTAACATCCATCGCTGCAGGGAGTTTCGTTGTAGTTGATGAAAGTGGAAAGAAGAATGCTCTTGAATCTGGAAGCAAGGTGGCATGCATTGTTTCTCGAGTTCTATATTTTGAACAAGTTCGCGAGCTTCAAAAATCCCCAGGATGGTATGTTTTATTATATCAAATTTCAACCTATTCATGTTAAAATAGATTAAGCATTGCTTGATAATATTTTGGAAATTCAGTCGATCAAACAAATACGAGGGTCTTGCTTATGATTGACCAGATGTCCCTTCACAAATATTTAGAAGCTAGAAGATAACTTTGTTCTTAACTGTGTTTTGTAAAAGGTGAAGCAGATGGTAGATTTATTTATTTGGTTGAAATTTGTTGAAGATAAGAATCAGATAGATGTGCCACACTATTATTTCTATTGCGTCTGGCGCGACAAAAAAATAGCTTGCCAGTATCACTACTACTAGTACATGTGGCCTTGTGCCGATGCTTTTATATCTACCATGCGTGCAAGCTGAAATTGGAAATAAACCTACCGCTTTAAACCATCTAGGTTGGATTAACGACTAGGTTGGCCTAACGTTTGATATTAATCATGTAAGCAATGAAATTAGTGTAAAATAAGTTCAAGTCATGGTGGTCACCTACTTAAAATTTAAAATTCTCGTTCAGTCCAACCTAGCTTGTTTTTCTTAAACTGGGTTAATATTTCACACTTTTTTATCGATTAATTGTAGGCCAGAAATCTTCAAGAATGCAATTGTTGGAGATCGAAACGAAAATCTTCGAGCACAAAATAATCAATCAGAAGAGGATGAGGTCAATTCGAGTGATGATGATGGCCTTCCCCCTTTAGAAGCCAACACGAACAGAGCTAAACCATTAATATTACAACCGGATGGTGAATCAGAGTCTGATTCAGATTCTTAACTTGTATATTAGTTTTAACTCTACACTCTTTTATTTAATTACCATGGACATTCATATTGATCGTTTGTCCTACGATTAAAAATTTTAATTTTGTAATAAAATTTCTGAGTACCTATTTTTGAATCTGATGGGATAAGATATCTATTCAGC

mRNA sequence

ACCTCTAGTCTTCTCCAATCTTTCATAGTTCACCCCCTCCCCTACGATCAGACGACGCCGGCGACTGTAACTCCGATCAGTCCAACCGCAATTTCCCTTTGTTTTGGACTAGGTTTAAAGGATTTTCCCTTTGTTTTTCTTATCCTTTTTTCTGTATGAGGAATGTTTCAACTGGTTTGACAGAACACACATATAAACCCAATTAATCTTAATAGAAGCCATTGGATAAACCCTATCTCTTCTCATCTCACTTCAGTTGCCCCACCGTAGGTCGCCACTGTTCTCATCTCCCATCACCGGCTGCCGGAGGCTCCCCAACCGGCGCTCTAACCTCGTCTCGTCACTTATTAGAAGTAGGGTTGAAGCCAAATCTCTGTCAAAGTATGAAAGGTGGAAGAAAGAACTTACAGAGGGCATCAGAGCATCATATCGCGAGCCTCGAAGATGGTCATAGCATTATGCTGGTTGTCTCAATTCGTGGTTCCAATCTAATTGAGGTAATGGATGCACAAGGTGGGAAATCACTGGCATTATTTCCTGCCAAGTTTCAAAAGAGTATGTGGATAAAACGAGGGAGTTTCGTTGTAGTTGATGAAAGTGGAAAGAAGAATGCTCTTGAATCTGGAAGCAAGGTGGCATGCATTGTTTCTCGAGTTCTATATTTTGAACAAGTTCGCGAGCTTCAAAAATCCCCAGGATGGCCAGAAATCTTCAAGAATGCAATTGTTGGAGATCGAAACGAAAATCTTCGAGCACAAAATAATCAATCAGAAGAGGATGAGGTCAATTCGAGTGATGATGATGGCCTTCCCCCTTTAGAAGCCAACACGAACAGAGCTAAACCATTAATATTACAACCGGATGGTGAATCAGAGTCTGATTCAGATTCTTAACTTGTATATTAGTTTTAACTCTACACTCTTTTATTTAATTACCATGGACATTCATATTGATCGTTTGTCCTACGATTAAAAATTTTAATTTTGTAATAAAATTTCTGAGTACCTATTTTTGAATCTGATGGGATAAGATATCTATTCAGC

Coding sequence (CDS)

ATGAAAGGTGGAAGAAAGAACTTACAGAGGGCATCAGAGCATCATATCGCGAGCCTCGAAGATGGTCATAGCATTATGCTGGTTGTCTCAATTCGTGGTTCCAATCTAATTGAGGTAATGGATGCACAAGGTGGGAAATCACTGGCATTATTTCCTGCCAAGTTTCAAAAGAGTATGTGGATAAAACGAGGGAGTTTCGTTGTAGTTGATGAAAGTGGAAAGAAGAATGCTCTTGAATCTGGAAGCAAGGTGGCATGCATTGTTTCTCGAGTTCTATATTTTGAACAAGTTCGCGAGCTTCAAAAATCCCCAGGATGGCCAGAAATCTTCAAGAATGCAATTGTTGGAGATCGAAACGAAAATCTTCGAGCACAAAATAATCAATCAGAAGAGGATGAGGTCAATTCGAGTGATGATGATGGCCTTCCCCCTTTAGAAGCCAACACGAACAGAGCTAAACCATTAATATTACAACCGGATGGTGAATCAGAGTCTGATTCAGATTCTTAA

Protein sequence

MKGGRKNLQRASEHHIASLEDGHSIMLVVSIRGSNLIEVMDAQGGKSLALFPAKFQKSMWIKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPGWPEIFKNAIVGDRNENLRAQNNQSEEDEVNSSDDDGLPPLEANTNRAKPLILQPDGESESDSDS

Homology

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BLAST of MELO3C020110.2 vs. NCBI nr
Match: XP_008456911.1 (PREDICTED: probable RNA-binding protein EIF1AD [Cucumis melo] >XP_008456912.1 PREDICTED: probable RNA-binding protein EIF1AD [Cucumis melo])

HSP 1 Score: 330.5 bits (846), Expect = 3.4e-87
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0


Query: 1   MKGGRKNLQRASEHHIASLEDGHSIMLVVSIRGSNLIEVMDAQGGKSLALFPAKFQKSMW 60
           MKGGRKNLQRASEHHIASLEDGHSIMLVVSIRGSNLIEVMDAQGGKSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLQRASEHHIASLEDGHSIMLVVSIRGSNLIEVMDAQGGKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPGWPEIFKNAIVGDRNE 120
           IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPGWPEIFKNAIVGDRNE
Sbjct: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPGWPEIFKNAIVGDRNE 120

Query: 121 NLRAQNNQSEEDEVNSSDDDGLPPLEANTNRAKPLILQPDGESESDSDS 170
           NLRAQNNQSEEDEVNSSDDDGLPPLEANTNRAKPLILQPDGESESDSDS
Sbjct: 121 NLRAQNNQSEEDEVNSSDDDGLPPLEANTNRAKPLILQPDGESESDSDS 169

[Close]

BLAST of MELO3C020110.2 vs. NCBI nr
Match: XP_004146450.1 (PREDICTED: probable RNA-binding protein EIF1AD [Cucumis sativus] >KGN50715.1 hypothetical protein Csa_5G218810 [Cucumis sativus])

HSP 1 Score: 313.2 bits (801), Expect = 5.6e-82
Identity = 161/169 (95.27%), Postives = 163/169 (96.45%), Query Frame = 0


Query: 1   MKGGRKNLQRASEHHIASLEDGHSIMLVVSIRGSNLIEVMDAQGGKSLALFPAKFQKSMW 60
           MKGGRKNLQRASEHHIASLEDGHSIM VVSIRGSNLIEVMDAQG KSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLQRASEHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPGWPEIFKNAIVGDRNE 120
           IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQ+RELQKSP WPEIFKNAIVGDRNE
Sbjct: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE 120

Query: 121 NLRAQNNQSEEDEVNSSDDDGLPPLEANTNRAKPLILQPDGESESDSDS 170
           NL+AQNNQ  EDEVNSSDDDGLPPLEANTNRAKPLILQPD ESESDSDS
Sbjct: 121 NLQAQNNQPGEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS 169

[Close]

BLAST of MELO3C020110.2 vs. NCBI nr
Match: XP_023547328.1 (probable RNA-binding protein EIF1AD [Cucurbita pepo subsp. pepo])

HSP 1 Score: 297.0 bits (759), Expect = 4.1e-77
Identity = 151/169 (89.35%), Postives = 159/169 (94.08%), Query Frame = 0


Query: 1   MKGGRKNLQRASEHHIASLEDGHSIMLVVSIRGSNLIEVMDAQGGKSLALFPAKFQKSMW 60
           MKGGRKNLQRAS  HI  LEDGHSIM VVSIRGSNLIEVMDAQG KSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLQRASNQHIVGLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPGWPEIFKNAIVGDRNE 120
           IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSP WPEIFKNAI GD+NE
Sbjct: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAITGDQNE 120

Query: 121 NLRAQNNQSEEDEVNSSDDDGLPPLEANTNRAKPLILQPDGESESDSDS 170
           NL+A+NN+ EEDE++SSDDDGLPPLEANTNRAKPLILQP+ E+ESDSDS
Sbjct: 121 NLQAENNRQEEDEIDSSDDDGLPPLEANTNRAKPLILQPEEETESDSDS 169

[Close]

BLAST of MELO3C020110.2 vs. NCBI nr
Match: XP_022942753.1 (probable RNA-binding protein EIF1AD [Cucurbita moschata])

HSP 1 Score: 294.3 bits (752), Expect = 2.7e-76
Identity = 149/169 (88.17%), Postives = 158/169 (93.49%), Query Frame = 0


Query: 1   MKGGRKNLQRASEHHIASLEDGHSIMLVVSIRGSNLIEVMDAQGGKSLALFPAKFQKSMW 60
           MKGGRKNLQRAS  HI  LEDGHSIM VVSIRGSNLIEVMDAQG KSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLQRASNQHIVGLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPGWPEIFKNAIVGDRNE 120
           IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVR+LQKSP WPEIFKNAI GD+NE
Sbjct: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRQLQKSPEWPEIFKNAITGDQNE 120

Query: 121 NLRAQNNQSEEDEVNSSDDDGLPPLEANTNRAKPLILQPDGESESDSDS 170
           NL+ +NN+ EEDE++SSDDDGLPPLEANTNRAKPLILQP+ E+ESDSDS
Sbjct: 121 NLQTENNRQEEDEIDSSDDDGLPPLEANTNRAKPLILQPEEETESDSDS 169

[Close]

BLAST of MELO3C020110.2 vs. NCBI nr
Match: XP_022146732.1 (probable RNA-binding protein EIF1AD [Momordica charantia])

HSP 1 Score: 287.3 bits (734), Expect = 3.3e-74
Identity = 146/167 (87.43%), Postives = 154/167 (92.22%), Query Frame = 0


Query: 1   MKGGRKNLQRASEHHIASLEDGHSIMLVVSIRGSNLIEVMDAQGGKSLALFPAKFQKSMW 60
           MKGGRKNLQRASE HI SLEDGH IM VVSIRGSNLIEVMDAQG KSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLQRASEQHIISLEDGHGIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPGWPEIFKNAIVGDRNE 120
           IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQK P WPE+FKNAIVGDRNE
Sbjct: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKWPEWPEVFKNAIVGDRNE 120

Query: 121 NLRAQNNQSEEDEVNSSDDDGLPPLEANTNRAKPLILQPDGESESDS 168
           NL+ +N+Q E+DEVNSS+DD LPPLEANTNRAKP +LQ D ES+SDS
Sbjct: 121 NLQVKNDQQEQDEVNSSEDDDLPPLEANTNRAKPFVLQSDAESDSDS 167

[Close]

BLAST of MELO3C020110.2 vs. TAIR10
Match: AT2G40780.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 177.6 bits (449), Expect = 6.6e-45
Identity = 95/171 (55.56%), Postives = 126/171 (73.68%), Query Frame = 0


Query: 1   MKGGRKNLQRASEHHIASLEDGHSIMLVVSIRGSNLIEVMDAQGGKSLALFPAKFQKSMW 60
           M  GR+NL++A+     +LE+  SI  VVS+RGSN IE+MDA+G  SLALFPAKF++SMW
Sbjct: 1   MNRGRRNLKQAASDQDFTLEECQSIAQVVSLRGSNQIEIMDAKGENSLALFPAKFRESMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPGWPEIFKNA--IVGDR 120
           I+RGSFVV+D +GK+ A ESGSKV  IV +VL+FEQVR LQKSP WPEIFK+   I  ++
Sbjct: 61  IRRGSFVVIDHTGKEKAQESGSKVTSIVCKVLFFEQVRLLQKSPEWPEIFKDTRPIPAEK 120

Query: 121 NENLRAQNNQSEEDEVNSSDDDGLPPLEANTNRAKPLILQPDGESESDSDS 170
           +  +    +  E D  +S DDDG+PPL+ANTNR +P  ++ D E++S SDS
Sbjct: 121 SSPIEQHEDDGEVD--SSDDDDGMPPLQANTNRLRPFGVKCDAETDSGSDS 169

[Close]

BLAST of MELO3C020110.2 vs. TAIR10
Match: AT2G40910.1 (F-box and associated interaction domains-containing protein)

HSP 1 Score: 43.1 bits (100), Expect = 2.0e-04
Identity = 24/59 (40.68%), Postives = 38/59 (64.41%), Query Frame = 0


Query: 1  MKGGRKNLQRASEHHIASLEDGHSIMLVVSIRGSNLIEVMDAQGGKSLALFPAKFQKSM 60
          MK  R++L++A+E   +  E+  S+  VVS+R S+ +++MD +G  SLAL PAK    M
Sbjct: 1  MKRRRRDLKQAAE---SEQEECQSVPQVVSLRDSDQLQIMDEKGDNSLALLPAKLPMRM 56

[Close]

BLAST of MELO3C020110.2 vs. Swiss-Prot
Match: sp|Q58CY2|EIF1A_BOVIN (Probable RNA-binding protein EIF1AD OS=Bos taurus OX=9913 GN=EIF1AD PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 9.9e-14
Identity = 45/111 (40.54%), Postives = 61/111 (54.95%), Query Frame = 0


Query: 13  EHHIASLEDGHSIMLVVSIRGSNLIEVMDAQGGKSLALFPAKFQKSMWIKRGSFVVVDES 72
           EH + S  D   I+ V+   G+NL EV  AQG + L   P+K++K++WIKRG F++VD  
Sbjct: 17  EHMVPS--DQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVD-- 76

Query: 73  GKKNALESGSKVACIVSRVLYFEQVRELQKSPGWPEIFKNAIVGDRNENLR 124
                +E G KV   +S VL  + VR LQK   WPE F      D N+  R
Sbjct: 77  ----PIEEGEKVKAEISFVLCKDHVRSLQKDGHWPEAFSQVTEKDNNDRNR 119

[Close]

BLAST of MELO3C020110.2 vs. Swiss-Prot
Match: sp|Q5RD29|EIF1A_PONAB (Probable RNA-binding protein EIF1AD OS=Pongo abelii OX=9601 GN=EIF1AD PE=2 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.9e-13
Identity = 47/118 (39.83%), Postives = 66/118 (55.93%), Query Frame = 0


Query: 13  EHHIASLEDGHSIMLVVSIRGSNLIEVMDAQGGKSLALFPAKFQKSMWIKRGSFVVVDES 72
           EH + S  D   I+ V+   G+NL EV  AQG + L   P+K++K++WIKRG F++VD  
Sbjct: 17  EHIVPS--DQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVD-- 76

Query: 73  GKKNALESGSKVACIVSRVLYFEQVRELQKSPGWPEIFKNAIVGDRNENLRAQNNQSE 131
                +E G KV   +S VL  + VR LQK   WPE F    V +++ N R +  Q E
Sbjct: 77  ----PIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAFSE--VAEKHNNNRNRQTQPE 124

[Close]

BLAST of MELO3C020110.2 vs. Swiss-Prot
Match: sp|Q8N9N8|EIF1A_HUMAN (Probable RNA-binding protein EIF1AD OS=Homo sapiens OX=9606 GN=EIF1AD PE=1 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.9e-13
Identity = 46/123 (37.40%), Postives = 65/123 (52.85%), Query Frame = 0


Query: 13  EHHIASLEDGHSIMLVVSIRGSNLIEVMDAQGGKSLALFPAKFQKSMWIKRGSFVVVDES 72
           EH + S  D   I+ V+   G+NL EV  AQG + L   P+K++K++WIKRG F++VD  
Sbjct: 17  EHIVPS--DQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVD-- 76

Query: 73  GKKNALESGSKVACIVSRVLYFEQVRELQKSPGWPEIFKNAIVGDRNENLRAQNNQSEED 132
                +E G KV   +S VL  + VR LQK   WPE F        N N + Q     E 
Sbjct: 77  ----PIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAFSEVAEKHNNRNRQTQPELPAEP 131

Query: 133 EVN 136
           +++
Sbjct: 137 QLS 131

[Close]

BLAST of MELO3C020110.2 vs. Swiss-Prot
Match: sp|Q4R354|EIF1A_MACFA (Probable RNA-binding protein EIF1AD OS=Macaca fascicularis OX=9541 GN=EIF1AD PE=2 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.9e-13
Identity = 46/123 (37.40%), Postives = 65/123 (52.85%), Query Frame = 0


Query: 13  EHHIASLEDGHSIMLVVSIRGSNLIEVMDAQGGKSLALFPAKFQKSMWIKRGSFVVVDES 72
           EH + S  D   I+ V+   G+NL EV  AQG + L   P+K++K++WIKRG F++VD  
Sbjct: 17  EHIVPS--DQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVD-- 76

Query: 73  GKKNALESGSKVACIVSRVLYFEQVRELQKSPGWPEIFKNAIVGDRNENLRAQNNQSEED 132
                +E G KV   +S VL  + VR LQK   WPE F        N N + Q     E 
Sbjct: 77  ----PIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAFSEVAEKHNNRNRQTQPELPAEP 131

Query: 133 EVN 136
           +++
Sbjct: 137 QLS 131

[Close]

BLAST of MELO3C020110.2 vs. Swiss-Prot
Match: sp|Q3THJ3|EIF1A_MOUSE (Probable RNA-binding protein EIF1AD OS=Mus musculus OX=10090 GN=Eif1ad PE=1 SV=2)

HSP 1 Score: 75.5 bits (184), Expect = 6.4e-13
Identity = 46/123 (37.40%), Postives = 64/123 (52.03%), Query Frame = 0


Query: 13  EHHIASLEDGHSIMLVVSIRGSNLIEVMDAQGGKSLALFPAKFQKSMWIKRGSFVVVDES 72
           EH + S  D   I+ V+   G+NL EV  AQG + L   P+K++K++WIKRG F++VD  
Sbjct: 17  EHMVPS--DHQQIVKVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVD-- 76

Query: 73  GKKNALESGSKVACIVSRVLYFEQVRELQKSPGWPEIFKNAIVGDRNENLRAQNNQSEED 132
                +E G KV   +S VL    VR LQK   WPE F        N N  +Q     E 
Sbjct: 77  ----PIEEGEKVKAEISFVLCKNHVRSLQKEGHWPEAFSEVAEKQNNMNRESQPELPAEP 131

Query: 133 EVN 136
           +++
Sbjct: 137 QLS 131

[Close]

BLAST of MELO3C020110.2 vs. TrEMBL
Match: tr|A0A1S3C3W3|A0A1S3C3W3_CUCME (probable RNA-binding protein EIF1AD OS=Cucumis melo OX=3656 GN=LOC103496721 PE=4 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 2.2e-87
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0


Query: 1   MKGGRKNLQRASEHHIASLEDGHSIMLVVSIRGSNLIEVMDAQGGKSLALFPAKFQKSMW 60
           MKGGRKNLQRASEHHIASLEDGHSIMLVVSIRGSNLIEVMDAQGGKSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLQRASEHHIASLEDGHSIMLVVSIRGSNLIEVMDAQGGKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPGWPEIFKNAIVGDRNE 120
           IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPGWPEIFKNAIVGDRNE
Sbjct: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPGWPEIFKNAIVGDRNE 120

Query: 121 NLRAQNNQSEEDEVNSSDDDGLPPLEANTNRAKPLILQPDGESESDSDS 170
           NLRAQNNQSEEDEVNSSDDDGLPPLEANTNRAKPLILQPDGESESDSDS
Sbjct: 121 NLRAQNNQSEEDEVNSSDDDGLPPLEANTNRAKPLILQPDGESESDSDS 169

[Close]

BLAST of MELO3C020110.2 vs. TrEMBL
Match: tr|A0A0A0KM30|A0A0A0KM30_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G218810 PE=4 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 3.7e-82
Identity = 161/169 (95.27%), Postives = 163/169 (96.45%), Query Frame = 0


Query: 1   MKGGRKNLQRASEHHIASLEDGHSIMLVVSIRGSNLIEVMDAQGGKSLALFPAKFQKSMW 60
           MKGGRKNLQRASEHHIASLEDGHSIM VVSIRGSNLIEVMDAQG KSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLQRASEHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPGWPEIFKNAIVGDRNE 120
           IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQ+RELQKSP WPEIFKNAIVGDRNE
Sbjct: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE 120

Query: 121 NLRAQNNQSEEDEVNSSDDDGLPPLEANTNRAKPLILQPDGESESDSDS 170
           NL+AQNNQ  EDEVNSSDDDGLPPLEANTNRAKPLILQPD ESESDSDS
Sbjct: 121 NLQAQNNQPGEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS 169

[Close]

BLAST of MELO3C020110.2 vs. TrEMBL
Match: tr|A0A2P5BLX6|A0A2P5BLX6_PARAD (Translation initiation factor 1A (eIF-1A) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_227570 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 5.4e-57
Identity = 115/169 (68.05%), Postives = 138/169 (81.66%), Query Frame = 0


Query: 1   MKGGRKNLQRASEHHIASLEDGHSIMLVVSIRGSNLIEVMDAQGGKSLALFPAKFQKSMW 60
           MKGGRKNL+R  E    +LEDGH+I  V+S+RGSNLIEVMD QG KSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLKREKEEGSLNLEDGHTIRQVLSLRGSNLIEVMDLQGEKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPGWPEIFKNAIVGDRNE 120
           IKRGSFVVVD+SGK+ ALESGSKV CIVS+VL++EQVR LQKSP WPE+F++A++ D N 
Sbjct: 61  IKRGSFVVVDDSGKEKALESGSKVTCIVSKVLFYEQVRTLQKSPKWPEVFRSAVLDDSNG 120

Query: 121 NLRAQNNQSEEDEVNSSDDDGLPPLEANTNRAKPLILQPDGESESDSDS 170
           ++  +  Q EE+E+ S DDDGLPPLEANTNR +P  L  + +S SDSDS
Sbjct: 121 SIERETCQQEEEELESRDDDGLPPLEANTNRIRPFELHVESDSGSDSDS 169

[Close]

BLAST of MELO3C020110.2 vs. TrEMBL
Match: tr|A0A2N9FN72|A0A2N9FN72_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16412 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 7.0e-57
Identity = 118/168 (70.24%), Postives = 137/168 (81.55%), Query Frame = 0


Query: 1   MKGGRKNLQRASEHHIASLEDGHSIMLVVSIRGSNLIEVMDAQGGKSLALFPAKFQKSMW 60
           MKGGRKNL+RA+E    SL+DGH+IM VVS+RGSNLIEVM AQG KSLALFPAKFQKSMW
Sbjct: 2   MKGGRKNLKRAAEEDKFSLQDGHTIMQVVSLRGSNLIEVMGAQGEKSLALFPAKFQKSMW 61

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPGWPEIFKNAIVGDRNE 120
           IKRGSFVVVD SGK+ ALESGSKVACIVS+VL++EQVR LQKSP WPE+FK+ I+ D NE
Sbjct: 62  IKRGSFVVVDISGKEKALESGSKVACIVSQVLFYEQVRSLQKSPEWPEVFKSTILDDSNE 121

Query: 121 NLRAQNNQSEEDEVNSSDDDGLPPLEANTNRAKPLILQPDGESESDSD 169
           +L  Q +Q        SDD+GLPP+EANTNR +P  +Q D ES+S SD
Sbjct: 122 SLHKQTSQEXXXXXXXSDDEGLPPIEANTNRIRPFEVQSDVESDSSSD 169

[Close]

BLAST of MELO3C020110.2 vs. TrEMBL
Match: tr|A0A2I4G9E2|A0A2I4G9E2_9ROSI (probable RNA-binding protein EIF1AD OS=Juglans regia OX=51240 GN=LOC109005875 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 1.2e-56
Identity = 116/168 (69.05%), Postives = 140/168 (83.33%), Query Frame = 0


Query: 1   MKGGRKNLQRASEHHIASLEDGHSIMLVVSIRGSNLIEVMDAQGGKSLALFPAKFQKSMW 60
           MKGGRKNL+RA+E    +L+DG +IM V+S+RGSNLIEVMD QG KSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLKRAAEDEKFNLQDGQTIMQVLSLRGSNLIEVMDGQGDKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPGWPEIFKNAIVGDRNE 120
           I+RGSFVVVD SGK+ ALESGSKVAC+VS+VL++EQVR LQKSP WPEIFK+  + D N 
Sbjct: 61  IRRGSFVVVDISGKEKALESGSKVACLVSQVLFYEQVRPLQKSPEWPEIFKSTHLEDSNG 120

Query: 121 NLRAQNNQSEEDEVNSSDDDGLPPLEANTNRAKPLILQPDGESESDSD 169
           +LR Q +Q EE+E+ SSD++GLPP+E NTNR KP+ L  D ES+S SD
Sbjct: 121 SLRGQTSQQEENELESSDEEGLPPIEVNTNRIKPVELLSDAESDSGSD 168

The following BLAST results are available for this feature:

BLAST of MELO3C020110.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008456911.1	3.4e-87	100.00	PREDICTED: probable RNA-binding protein EIF1AD [Cucumis melo] >XP_008456912.1 PR...	[more]
XP_004146450.1	5.6e-82	95.27	PREDICTED: probable RNA-binding protein EIF1AD [Cucumis sativus] >KGN50715.1 hyp...	[more]
XP_023547328.1	4.1e-77	89.35	probable RNA-binding protein EIF1AD [Cucurbita pepo subsp. pepo]	[more]
XP_022942753.1	2.7e-76	88.17	probable RNA-binding protein EIF1AD [Cucurbita moschata]	[more]
XP_022146732.1	3.3e-74	87.43	probable RNA-binding protein EIF1AD [Momordica charantia]	[more]

BLAST of MELO3C020110.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G40780.1	6.6e-45	55.56	Nucleic acid-binding, OB-fold-like protein	[more]
AT2G40910.1	2.0e-04	40.68	F-box and associated interaction domains-containing protein	[more]

BLAST of MELO3C020110.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q58CY2\|EIF1A_BOVIN	9.9e-14	40.54	Probable RNA-binding protein EIF1AD OS=Bos taurus OX=9913 GN=EIF1AD PE=2 SV=1	[more]
sp\|Q5RD29\|EIF1A_PONAB	2.9e-13	39.83	Probable RNA-binding protein EIF1AD OS=Pongo abelii OX=9601 GN=EIF1AD PE=2 SV=1	[more]
sp\|Q8N9N8\|EIF1A_HUMAN	4.9e-13	37.40	Probable RNA-binding protein EIF1AD OS=Homo sapiens OX=9606 GN=EIF1AD PE=1 SV=1	[more]
sp\|Q4R354\|EIF1A_MACFA	4.9e-13	37.40	Probable RNA-binding protein EIF1AD OS=Macaca fascicularis OX=9541 GN=EIF1AD PE=...	[more]
sp\|Q3THJ3\|EIF1A_MOUSE	6.4e-13	37.40	Probable RNA-binding protein EIF1AD OS=Mus musculus OX=10090 GN=Eif1ad PE=1 SV=2	[more]

BLAST of MELO3C020110.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C3W3\|A0A1S3C3W3_CUCME	2.2e-87	100.00	probable RNA-binding protein EIF1AD OS=Cucumis melo OX=3656 GN=LOC103496721 PE=4...	[more]
tr\|A0A0A0KM30\|A0A0A0KM30_CUCSA	3.7e-82	95.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G218810 PE=4 SV=1	[more]
tr\|A0A2P5BLX6\|A0A2P5BLX6_PARAD	5.4e-57	68.05	Translation initiation factor 1A (eIF-1A) OS=Parasponia andersonii OX=3476 GN=Pa...	[more]
tr\|A0A2N9FN72\|A0A2N9FN72_FAGSY	7.0e-57	70.24	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16412 PE=4 SV=1	[more]
tr\|A0A2I4G9E2\|A0A2I4G9E2_9ROSI	1.2e-56	69.05	probable RNA-binding protein EIF1AD OS=Juglans regia OX=51240 GN=LOC109005875 PE...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0003743	translation initiation factor activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006413	translational initiation

Vocabulary: **INTERPRO**
Term	Definition
IPR012340	NA-bd_OB-fold
IPR039294	EIF1AD
IPR006196	RNA-binding_domain_S1_IF1
IPR001253	TIF_eIF-1A

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
biological_process	GO:0006626	protein targeting to mitochondrion
biological_process	GO:0006446	regulation of translational initiation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003743	translation initiation factor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C020110.2.1	MELO3C020110.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001253	Translation initiation factor 1A (eIF-1A)	SMART	SM00652	eIF1neu4	coord: 18..107 e-value: 5.8E-26 score: 102.2
IPR006196	RNA-binding domain, S1, IF1 type	PFAM	PF01176	eIF-1a	coord: 23..72 e-value: 2.5E-9 score: 36.7
IPR006196	RNA-binding domain, S1, IF1 type	PROSITE	PS50832	S1_IF1_TYPE	coord: 12..92 score: 9.314
None	No IPR available	GENE3D	G3DSA:2.40.50.140		coord: 1..141 e-value: 2.1E-24 score: 87.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..169
IPR039294	Probable RNA-binding protein EIF1AD	PANTHER	PTHR21641	TRANSLATION INITIATION FACTOR-RELATED	coord: 1..168
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	SSF50249	Nucleic acid-binding proteins	coord: 9..140

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C020110.2	Csa5G218810	Cucumber (Chinese Long) v2	cumedB349
MELO3C020110.2	CSPI05G11320	Wild cucumber (PI 183967)	cpimedB351
MELO3C020110.2	Cucsa.144150	Cucumber (Gy14) v1	cgymedB238
MELO3C020110.2	CmaCh04G010800	Cucurbita maxima (Rimu)	cmamedB742
MELO3C020110.2	CmoCh04G011450	Cucurbita moschata (Rifu)	cmomedB738
MELO3C020110.2	Lsi04G010410	Bottle gourd (USVL1VR-Ls)	lsimedB300
MELO3C020110.2	Cp4.1LG01g11540	Cucurbita pepo (Zucchini)	cpemedB441
MELO3C020110.2	CsGy5G008590	Cucumber (Gy14) v2	cgybmedB311
MELO3C020110.2	Cla007268	Watermelon (97103) v1	medwmB053
MELO3C020110.2	ClCG07G004830	Watermelon (Charleston Gray)	medwcgB065
MELO3C020110.2	Cla97C07G133250	Watermelon (97103) v2	medwmbB062
MELO3C020110.2	Bhi07G000437	Wax gourd	medwgoB084
MELO3C020110.2	Carg00182	Silver-seed gourd	carmedB0671
MELO3C020110.2	CsaV3_5G010740	Cucumber (Chinese Long) v3	cucmedB363

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C020110.2	Cucurbita maxima (Rimu)	cmamedB743
MELO3C020110.2	Cucurbita moschata (Rifu)	cmomedB739
MELO3C020110.2	Cucurbita pepo (Zucchini)	cpemedB442
MELO3C020110.2	Silver-seed gourd	carmedB0903