Lsi04G010410 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi04G010410
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionCoffea canephora DH200=94 genomic scaffold, scaffold_78
Locationchr04 : 12193020 .. 12197889 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGTTGTCTCAATTCGTGGTTCCAATCTAATCGAGGTATCTTTCTATTTCATCGATTATGCTCCCTCTCTCTGATTTTGTCAATTATTTACTTCACCATCTTGCGCATCTGCTATTGCCTACTGCGTTGCATCAATCAATCTGAATGAAAAACTTCTTTAATTGCAGTTAATTATCCACCGATGTTTTGTTTTCAAAATTAAAAATTGTAGGTTTTAATTCTTGCACGTTTGATTGTGGGGTTGCGTTGTGTATTTGAGATATTTGCAAACTATTTAAATAAATGATTCTGATACGCTTGTTGTGTTGCAATTTCTTTGTAGAAATCATACTTCTAGTTAACCATTCATATGGAGCAAGCCATAACCTGTGCAGTTTCTCTGTTTCATGTGCAATAATTTGTTCATTTCTTTATTTTGTAGGAAACCAGGATGTATATTATTTGCCAATTATTTTAAGCGGGCTACTTTATTTTGTATTTTGGAAAATCTTTAATACCATTTGTATTCCTTCATCATCTCTAGGTAATGGATGCACAAGGCGAGAAATCACTGGCATTATTTCCTGCCAAGTTTCAAAAGAGTATGTGGATAAAACGAGGTATGTTCTATTACCCATTCTACTCAACTCATTGTTCCCATCGCATTAAATTGCCTTCCTAAGTAAGCAAGGTTCATTTTTTCTCACAGAAAGCTTTGTTTCTTTATTAAAAAAAAATCTACAAAATCAAGAGATCTTCTACTATCAAAAAGAAATGATAGAAGAAAAACAAAAGATCCCTTTTTGCATTTGCCTCACTCTTTATATCAAGGTTTTATGCAGTAAGCTTCACTGTGAACGTCTGGAAACTAGGCTATTTCATTTTCAGTGTTCTAGGAATTCATAAACTGCGGCTGTTGACTGTTAGTTATGACTGTTTCTTCCCCTTTCATTTAGTAGCTTTGACTATATTCATTATAACATAGAGATAGAGGTTATTTTGGATAATTTGTTAGGATCTCAATCTAACAACTAAAATTGTACTCCAATATTGAAGAGAAGTTATATTGCTCATAACCTTTCAGGAGGCTATCATATTGCTAATAGCCTTTCTAGAGGCTATCTCTCCCTCCTTTTGTTTTTTTTTTTTTGAAAAATAGACCGAACAGAAGGTCAGCTACACCTTGGTCTTCTGTTCCTAGAAGCCAAGCTGCCACTAGGGCATTGGCTACTCCAACATAAGGTTGCATCAAAACAAGGTGACCGGAGACTACAATGATGACACATTTGACGTTGCTGCAAACATTTCTTATGGTGATTGGATCGGGTTTAGAAATGGAGAGATTCGTGCTGTCGCCATGGAGGCTCTCCCACAATGACAATGGCATATGAGAACTTGTTCGACTTGACAAATCCCGCATCTAGGTTCTTGTTGTACACTACCTGTGTCGCAGGATTGGTCGTATTCTTCACAACATTGAGGATGGTAGTACCAACAGTGAGATCATTGTTGCTTTGACCCTACCATGTGATTGTCCATCCTCCACATTGATAGCCCAAGTTGTTGGCATGAGTCCCTGCAACTAGTGTCTTTCTAGCTTTTTTAGGAAGAGGAAGCAGTGACTCGTGACAGAGGGATCGTTCTTCAATAGCACAAGCGATTTTCTTACCGCCTCCCTAACCATTTCTCTATGTTTCTTGCTTCCAAGTTGGTTGGCTAGGCTGTTATTCGACAATGAGTTTTCAAAGAGACCCATAAGGAATTTTGTTCTTAATATCCTATGCATAGCATCATTGATCCTGCTCATTGGAATGATATTATTCTTCACCTGGTGAGTTAGTTCGTCGATGAACTCTATGTAGTTTTCAAGAACCATAATCATGTCAATTCCAGTACTAACTCTAGCTTGAACTGGATATGAAGAATTAGCATGTGGAGGAGAGGTGATCCTGCCAATCCTTTGCCAATCGAAAATGACAAAACCCTTGAACTTGAGCTTGTCCTTGAGGTAGCTAGTGATAAGGTCATGGTTGGCGTGCATTCTCACTCCATTCCAGCTCGAGTAAGATACCATTACTGTTGCAACTCCCCTCTTTTTATCGAGTTATAATATGCAGGCATGTGAATATTAAGCAATCCATTATAGTTAACCACAGTGTTATTTTCATTGATACTCCTAGTTGTGCCACCATCTACGAAGTGCTTAATACAGGCCTCGACATTTTGTTTTCCCGCAACAAAAGAAATCCCTTTTCGCGAATTAGAAGGAATTGCTCCTTGCAATCCAGGTATAATCTCAATCATTTGTTGAACAATCTTATGATCTTTGCTATAGCTCTCGTAGCATTGACCCCATCTAGGATCTCTGCACACCGCAATACATGGAGAAAAAACGTAAGGAATTCTAGTTGCTCTGATTTCAAGTGTTGTGGCATCCCCAATCCGCCTAAGAAGTTCCAAATCCCTAGTAACTCAAGACCAACAATTTGAGGAAAGATAGTGGCATTGTACACATTATTATGACCATGAACAACATCAATCCCATAAATCATAGGGATCTCAAGACGGGTGGCTAAAGGCCCCTATTGGATCTCATTCACCATATTGACCCAAGTCTCCGCCGTTGCTTTCTCCGCTAGTGCACTCCCTCCTCCGCTCAGTACACTCTCAATGAAATAGTTCTTCATGACGTCCGGGGTTGCAACTTTCTGTTCAATCTCAACCATTTGGCCAATTTTTTCTTCCAAAGTCATCCGACCCATAAGATCTTTGATTCTAGCACCCAATGGCTGTTTAGGGTCTTTGTATTTCAGGTAAGTTGCATCTGTAGTAACGGTCAGGCAGCAAAGCAGCAGCCAAAACCCCATCTAGGGTTTTAAGAACCGCATCATTTTGAGCTAGAATCAAAGATAATTCACAATGTGGTTAACTATCTCTCCCTCCTACAATTCACAATGGACTGATTTTCCAAAATTTTGTCTAATATATGAACTCCCCAACTCCCACTATTTATAACCACTCCACAAACTATCAAGTAATTATAATGTTAAATTACATGTCTAGTCTCTAAGCTTTTAAGTTTTTGTCCATTTGTTCCATGAACTTTAAAAGTATTTAATATGTCCCTGAACTTTTAGTTTCAGATTTGTATTTATTTGGTTCTTAAATTTATAAACTGCCTTATAGGTCCTTAAACTTTGAACTTTATGTCGCCTTTGAAATTTCAATTTTGTGTATAATAAGCCTTTGACCTATATAAGTTAATTTTTCATTTTATTAAAAAAATATGTTAGGAATCTATTAGACACAAAATTAAAAGTTGACTTGTTAGATATTTCTAAAGTTTAGGAATATTTTAGACATTTTTTAAATTTCATTGACCTTTTTGATACAGATTTGAAAGCTTAGGGACTAAACTTGTAATTTAACCTAATTATAATTATGCCACAATTAAGATTACTACTCTAACATAACTTTAGATCCTGCCTTTACTGATTGCTTCTGAAGTACTGAAATAGGTATTTGAAAGAAGTGTTGTTTGCTTTGCCATCATTGCAGGGAGTTTCGTTGTAGTTGATGAAAGTGGAAAGAAGAATGCTCTTGAATCTGGAAGCAAGGTGGCATGCATTGTTTCTCGAGTTCTATATTTTGAACAAGTTCGCGAGCTTCAAAAATCCCCAGAATGGTATGTTTTATTATATCAAATTTCAACGTATTCATTAAAATGGATTAGGCATTACTTGGTAAATTTTGGCGATTCTATTAATCGATGAAACAAATACGAGGGTCTTGCTTATGATCTAACAGATGTCCCTTTGCAAATATTTAGAAGCATGAAATTAACTTTGTTCTTAACTGTTGTGAAAAAGGTGAAGCAGATGGTTAATTTATTTATATGATTGAAATTCGATAAAGAAAACAACCAGATAGATATGCAACATTTTTATTTCTATTGCGTCTTGCACCAAAAAAATAGCTTGTTGGTATCACTATTACTAGTACATGTGGTGCCCTTGTGTCAATGCTTTTTTCTTCTACTACGGTGCAAGCTGAAACTGGAAATAAACCTACCACTCTAAATCATCCTAGGTTGGCCTAATGGCTAATATTGATCATGTAAATAATAAAATTAGAGAAAAATAGGGTCAATTCATGTCGGCCACCTATTTAAAATTTAATATATTACGAACTATCTTGACAATAAAAAAATGTAGTAGTCAGATTGTTTCATGAGAATGGTTAAAGTGCGCACACGTTGATCTGAACACACTCGGATATCCGATAAAACAATGGAAAATGTTAGTTGGTTTGGTTTGGATATCCGATATCCCTAGTCGTTCATGTGGGGAATTGATCTCCGAACAGAGATGAAAAATCCTCATGGAGACGTGGATGGGGTAGTGTATTCCAGTCCCAGCCCAGCCTGTTCTTAGATCTTAGAAAACTGGTTTCACGCACAACTTTTTGTTTTTCTAAAACTGGTAGGTTAATTTACCACACTATTTTTTTACCAATTATTGCAGGCCAGAAATCTTCAAGAATGCAATTGTTGGAGATCGAAATGAAAATCTGCAAGCACAGAATAATCGACAAGAAGAGGATGAGGTTGCTGAGGTCGACTCGAGTGATGATGATGGCCTTCCCCCTCTAGAAGCCAACACGAACAGAGCTAAACCATTAATATTACAACCAGATGCAGAATCAGAGTCTGATTCAGATTCTTAACTTGTATATTAATTTTAATTCCACACTTTTTGACTTAACAACTATGAATATTCATTTTGATCGTTTATTGTTAAATTTTAATTTTGTAAGTAACAGAAATTTCTGACTACCTAATTTTAAATCTGATATAATAAGTAATGATCTATGCAGTTTAGAATATCG

mRNA sequence

ATGCAGGAAACCAGGATGCCAGAAATCTTCAAGAATGCAATTGTTGGAGATCGAAATGAAAATCTGCAAGCACAGAATAATCGACAAGAAGAGGATGAGGTTGCTGAGGTCGACTCGAGTGATGATGATGGCCTTCCCCCTCTAGAAGCCAACACGAACAGAGCTAAACCATTAATATTACAACCAGATGCAGAATCAGAGTCTGATTCAGATTCTTAACTTGTATATTAATTTTAATTCCACACTTTTTGACTTAACAACTATGAATATTCATTTTGATCGTTTATTGTTAAATTTTAATTTTGTAAGTAACAGAAATTTCTGACTACCTAATTTTAAATCTGATATAATAAGTAATGATCTATGCAGTTTAGAATATCG

Coding sequence (CDS)

ATGCAGGAAACCAGGATGCCAGAAATCTTCAAGAATGCAATTGTTGGAGATCGAAATGAAAATCTGCAAGCACAGAATAATCGACAAGAAGAGGATGAGGTTGCTGAGGTCGACTCGAGTGATGATGATGGCCTTCCCCCTCTAGAAGCCAACACGAACAGAGCTAAACCATTAATATTACAACCAGATGCAGAATCAGAGTCTGATTCAGATTCTTAA

Protein sequence

MQETRMPEIFKNAIVGDRNENLQAQNNRQEEDEVAEVDSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS
Homology
[Close]
BLAST of Lsi04G010410 vs. TrEMBL
Match: A0A0A0KM30_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G218810 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 4.2e-21
Identity = 59/66 (89.39%), Postives = 61/66 (92.42%), Query Frame = 1 

Query: 7   PEIFKNAIVGDRNENLQAQNNRQEEDEVAEVDSSDDDGLPPLEANTNRAKPLILQPDAES 66
           PEIFKNAIVGDRNENLQAQNN+  EDEV   +SSDDDGLPPLEANTNRAKPLILQPDAES
Sbjct: 107 PEIFKNAIVGDRNENLQAQNNQPGEDEV---NSSDDDGLPPLEANTNRAKPLILQPDAES 166

Query: 67  ESDSDS 73
           ESDSDS
Sbjct: 167 ESDSDS 169

[Close]
BLAST of Lsi04G010410 vs. TrEMBL
Match: A0A067JCS2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03302 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.0e-08
Identity = 38/66 (57.58%), Postives = 45/66 (68.18%), Query Frame = 1 

Query: 7   PEIFKNAIVGDRNENLQAQNNRQEEDEVAEVDSSDDDGLPPLEANTNRAKPLILQPDAES 66
           PEIFK+    D N +L    ++QE+DE    DSSDDDGLPPLEAN NR KP   Q DAES
Sbjct: 107 PEIFKSTTSDDSNGSLHKSTSQQEDDEF---DSSDDDGLPPLEANMNRIKPPEFQSDAES 166

Query: 67  ESDSDS 73
           +S SD+
Sbjct: 167 KSGSDT 169

[Close]
BLAST of Lsi04G010410 vs. TrEMBL
Match: V4TCA9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032334mg PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.3e-08
Identity = 37/71 (52.11%), Postives = 49/71 (69.01%), Query Frame = 1 

Query: 2   QETRMPEIFKNAIVGDRNENLQAQNNRQEEDEVAEVDSSDDDGLPPLEANTNRAKPLILQ 61
           + T  PEIFK+    D N +L+ Q    EE++ +E D  DDDGLPPLEANTNR KP+ LQ
Sbjct: 212 KSTEWPEIFKSTNSDDANGSLERQACNHEENDQSESD--DDDGLPPLEANTNRMKPMELQ 271

Query: 62  PDAESESDSDS 73
             +ES+S+SD+
Sbjct: 272 TQSESDSESDT 280

[Close]
BLAST of Lsi04G010410 vs. TrEMBL
Match: A0A068UZC3_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00039023001 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 9.0e-08
Identity = 35/66 (53.03%), Postives = 46/66 (69.70%), Query Frame = 1 

Query: 7   PEIFKNAIVGDRNENLQAQNNRQEEDEVAEVDSSDDDGLPPLEANTNRAKPLILQPDAES 66
           PE+FK A +G+  ++LQ+  +  EE++    +SSDDDGLPPLEANTNR +P     D ES
Sbjct: 107 PEVFKAATLGNSKQDLQSHTSNMEEND----NSSDDDGLPPLEANTNRLRPFQSHSDTES 166

Query: 67  ESDSDS 73
            SDSDS
Sbjct: 167 ASDSDS 168

[Close]
BLAST of Lsi04G010410 vs. TrEMBL
Match: A0A067FN38_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030718mg PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.5e-07
Identity = 36/71 (50.70%), Postives = 49/71 (69.01%), Query Frame = 1 

Query: 2   QETRMPEIFKNAIVGDRNENLQAQNNRQEEDEVAEVDSSDDDGLPPLEANTNRAKPLILQ 61
           + T  PEIFK+    D N +L+ Q    EE++ +E D  DDDGLPPLEAN NR KP+ LQ
Sbjct: 102 KSTEWPEIFKSTNSDDANGSLERQACNHEENDQSESD--DDDGLPPLEANINRMKPMELQ 161

Query: 62  PDAESESDSDS 73
            ++ES+S+SD+
Sbjct: 162 TESESDSESDT 170

[Close]
BLAST of Lsi04G010410 vs. TAIR10
Match: AT2G40780.1 (AT2G40780.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 50.1 bits (118), Expect = 6.8e-07
Identity = 34/69 (49.28%), Postives = 48/69 (69.57%), Query Frame = 1 

Query: 7   PEIFKNA--IVGDRNENLQAQNNRQEEDEVAEVDSS-DDDGLPPLEANTNRAKPLILQPD 66
           PEIFK+   I  +++  ++     Q ED+  EVDSS DDDG+PPL+ANTNR +P  ++ D
Sbjct: 107 PEIFKDTRPIPAEKSSPIE-----QHEDD-GEVDSSDDDDGMPPLQANTNRLRPFGVKCD 166

Query: 67  AESESDSDS 73
           AE++S SDS
Sbjct: 167 AETDSGSDS 169

[Close]
BLAST of Lsi04G010410 vs. NCBI nr
Match: gi|659114116|ref|XP_008456911.1| (PREDICTED: probable RNA-binding protein EIF1AD [Cucumis melo])

HSP 1 Score: 108.2 bits (269), Expect = 6.0e-21
Identity = 58/66 (87.88%), Postives = 61/66 (92.42%), Query Frame = 1 

Query: 7   PEIFKNAIVGDRNENLQAQNNRQEEDEVAEVDSSDDDGLPPLEANTNRAKPLILQPDAES 66
           PEIFKNAIVGDRNENL+AQNN+ EEDEV   +SSDDDGLPPLEANTNRAKPLILQPD ES
Sbjct: 107 PEIFKNAIVGDRNENLRAQNNQSEEDEV---NSSDDDGLPPLEANTNRAKPLILQPDGES 166

Query: 67  ESDSDS 73
           ESDSDS
Sbjct: 167 ESDSDS 169

[Close]
BLAST of Lsi04G010410 vs. NCBI nr
Match: gi|449457427|ref|XP_004146450.1| (PREDICTED: probable RNA-binding protein EIF1AD [Cucumis sativus])

HSP 1 Score: 108.2 bits (269), Expect = 6.0e-21
Identity = 59/66 (89.39%), Postives = 61/66 (92.42%), Query Frame = 1 

Query: 7   PEIFKNAIVGDRNENLQAQNNRQEEDEVAEVDSSDDDGLPPLEANTNRAKPLILQPDAES 66
           PEIFKNAIVGDRNENLQAQNN+  EDEV   +SSDDDGLPPLEANTNRAKPLILQPDAES
Sbjct: 107 PEIFKNAIVGDRNENLQAQNNQPGEDEV---NSSDDDGLPPLEANTNRAKPLILQPDAES 166

Query: 67  ESDSDS 73
           ESDSDS
Sbjct: 167 ESDSDS 169

[Close]
BLAST of Lsi04G010410 vs. NCBI nr
Match: gi|645265835|ref|XP_008238340.1| (PREDICTED: probable RNA-binding protein EIF1AD [Prunus mume])

HSP 1 Score: 68.2 bits (165), Expect = 6.8e-09
Identity = 39/66 (59.09%), Postives = 47/66 (71.21%), Query Frame = 1 

Query: 7   PEIFKNAIVGDRNENLQAQNNRQEEDEVAEVDSSDDDGLPPLEANTNRAKPLILQPDAES 66
           PEIFK+AI    N +LQ     Q+E+   E+DSSDDDGLPPLEANTNR KP+  + D ES
Sbjct: 68  PEIFKSAIPDGCNASLQGDTTSQQEEN--ELDSSDDDGLPPLEANTNRMKPVDWKSDTES 127

Query: 67  ESDSDS 73
            SDSD+
Sbjct: 128 NSDSDT 131

[Close]
BLAST of Lsi04G010410 vs. NCBI nr
Match: gi|645256904|ref|XP_008234164.1| (PREDICTED: probable RNA-binding protein EIF1AD [Prunus mume])

HSP 1 Score: 66.6 bits (161), Expect = 2.0e-08
Identity = 37/66 (56.06%), Postives = 48/66 (72.73%), Query Frame = 1 

Query: 7   PEIFKNAIVGDRNENLQAQNNRQEEDEVAEVDSSDDDGLPPLEANTNRAKPLILQPDAES 66
           PEIFK+ +    + +LQ   ++QEE+E   +DSSDDDGLPPLEANTNR KP+  + D ES
Sbjct: 107 PEIFKSTVSDGCHASLQGDTSQQEENE---LDSSDDDGLPPLEANTNRMKPVDWKSDTES 166

Query: 67  ESDSDS 73
            SDSD+
Sbjct: 167 NSDSDT 169

[Close]
BLAST of Lsi04G010410 vs. NCBI nr
Match: gi|802778340|ref|XP_012091122.1| (PREDICTED: probable RNA-binding protein EIF1AD [Jatropha curcas])

HSP 1 Score: 65.1 bits (157), Expect = 5.8e-08
Identity = 38/66 (57.58%), Postives = 45/66 (68.18%), Query Frame = 1 

Query: 7   PEIFKNAIVGDRNENLQAQNNRQEEDEVAEVDSSDDDGLPPLEANTNRAKPLILQPDAES 66
           PEIFK+    D N +L    ++QE+DE    DSSDDDGLPPLEAN NR KP   Q DAES
Sbjct: 107 PEIFKSTTSDDSNGSLHKSTSQQEDDEF---DSSDDDGLPPLEANMNRIKPPEFQSDAES 166

Query: 67  ESDSDS 73
           +S SD+
Sbjct: 167 KSGSDT 169

The following BLAST results are available for this feature:
BLAST of Lsi04G010410 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi04G010410 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KM30_CUCSA4.2e-2189.39Uncharacterized protein OS=Cucumis sativus GN=Csa_5G218810 PE=4 SV=1[more]
A0A067JCS2_JATCU4.0e-0857.58Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03302 PE=4 SV=1[more]
V4TCA9_9ROSI5.3e-0852.11Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032334mg PE=4 SV=1[more]
A0A068UZC3_COFCA9.0e-0853.03Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00039023001 PE=4 SV=1[more]
A0A067FN38_CITSI1.5e-0750.70Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030718mg PE=4 SV=1[more]
BLAST of Lsi04G010410 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G40780.16.8e-0749.28 Nucleic acid-binding, OB-fold-like protein[more]
BLAST of Lsi04G010410 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659114116|ref|XP_008456911.1|6.0e-2187.88PREDICTED: probable RNA-binding protein EIF1AD [Cucumis melo][more]
gi|449457427|ref|XP_004146450.1|6.0e-2189.39PREDICTED: probable RNA-binding protein EIF1AD [Cucumis sativus][more]
gi|645265835|ref|XP_008238340.1|6.8e-0959.09PREDICTED: probable RNA-binding protein EIF1AD [Prunus mume][more]
gi|645256904|ref|XP_008234164.1|2.0e-0856.06PREDICTED: probable RNA-binding protein EIF1AD [Prunus mume][more]
gi|802778340|ref|XP_012091122.1|5.8e-0857.58PREDICTED: probable RNA-binding protein EIF1AD [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0006626 protein targeting to mitochondrion
biological_process GO:0006413 translational initiation
cellular_component GO:0005840 ribosome
cellular_component GO:0005575 cellular_component
molecular_function GO:0003743 translation initiation factor activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G010410.1Lsi04G010410.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 12..32
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi04G010410Csa5G218810Cucumber (Chinese Long) v2culsiB369
Lsi04G010410CSPI05G11320Wild cucumber (PI 183967)cpilsiB373
Lsi04G010410Cucsa.144150Cucumber (Gy14) v1cgylsiB232
Lsi04G010410CmaCh04G010800Cucurbita maxima (Rimu)cmalsiB672
Lsi04G010410CmoCh04G011450Cucurbita moschata (Rifu)cmolsiB662
Lsi04G010410MELO3C020110Melon (DHL92) v3.5.1lsimeB282
Lsi04G010410ClCG07G004830Watermelon (Charleston Gray)lsiwcgB297
Lsi04G010410MELO3C020110.2Melon (DHL92) v3.6.1lsimedB300
Lsi04G010410Cla97C07G133250Watermelon (97103) v2lsiwmbB298
Lsi04G010410Bhi07G000437Wax gourdlsiwgoB381
Lsi04G010410Cp4.1LG01g11540Cucurbita pepo (Zucchini)cpelsiB354
Lsi04G010410CsGy5G008590Cucumber (Gy14) v2cgyblsiB338
Lsi04G010410Carg00182Silver-seed gourdcarlsiB605
Lsi04G010410CsaV3_5G010740Cucumber (Chinese Long) v3cuclsiB394
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi04G010410Bottle gourd (USVL1VR-Ls)lsilsiB128
Lsi04G010410Cucurbita maxima (Rimu)cmalsiB285
Lsi04G010410Cucurbita maxima (Rimu)cmalsiB671
Lsi04G010410Cucurbita moschata (Rifu)cmolsiB274
Lsi04G010410Cucurbita moschata (Rifu)cmolsiB663
Lsi04G010410Cucurbita pepo (Zucchini)cpelsiB149
Lsi04G010410Cucurbita pepo (Zucchini)cpelsiB355
Lsi04G010410Wild cucumber (PI 183967)cpilsiB465
Lsi04G010410Cucumber (Chinese Long) v2culsiB458
Lsi04G010410Watermelon (Charleston Gray)lsiwcgB263
Lsi04G010410Watermelon (97103) v1lsiwmB306
Lsi04G010410Cucumber (Gy14) v2cgyblsiB424
Lsi04G010410Silver-seed gourdcarlsiB242
Lsi04G010410Silver-seed gourdcarlsiB828
Lsi04G010410Cucumber (Chinese Long) v3cuclsiB487
Lsi04G010410Watermelon (97103) v2lsiwmbB270
Lsi04G010410Wax gourdlsiwgoB362