Csa5G218810 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa5G218810
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Putative RNA-binding protein EIF1AD; contains IPR001253 (Translation initiation factor 1A (eIF-1A))
Location	Chr5 : 9829019 .. 9831802 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCGCTCTAATCTCATCTCGTCACTTCTTAGAATTACGGTTCTCTTTCAAAGTATGAAAGGTGGGAGAAAGAACTTACAGCGGGCATCGGAGCATCATATCGCAAGCCTCGAAGATGGTCATAGTATTATGCAGGTTGTCTCAATTCGTGGTTCCAATCTAATTGAGGTATCCTTCTATTTCATCGATCATGCTCGCTCTCTCTAATTTTGTCAACTTTTTACTCCACAATCTTGTGCTTTTCCTATTGCCTATTGTGTTAATTGCGTTAATCAACCTGAATGAACAACTCCTTTAATTGCAGTTAATCATCCACTAATGTTTTGTTTTCGAAAGTAAAAATAGTAGGTTTCAATTCTTGCTGTTTGATTGTGTGGTTACATTGTGTATTTGAGATATTTGCTAACGATTTAAATAAATGATTCTGATATGCTTGTTGTATTGCAATTTCTTTGTACAAGTCATCCTTTTAGTTAAGCGTTCATATGGGGGAAACCATAACCTCTGCAGTTTCTCTATTTCGGGTGCAATAATTTGTTTGTTTCTTTATTTTTTAGGAAACCAAGATGTGTATTATTTGTCAATTATATTCAGTGGGCTGCTTTGCTTTATTTTGTATTTTGGACAATCTTTAAAATTTTTCTTCATCCTCTCTAGGTAATGGATGCACAAGGTGAGAAATCACTGGCATTATTTCCTGCCAAGTTTCAAAAGAGTATGTGGATAAAACGAGGTATGTTCTACTAACCATTCTACTCAACTCATTATTCCTGTTGCATTACATTGCCTTCCGAAGTAAGCAAGGTTCATTAATTCTCACTAAAAAAGCTGTTTCTTATTAAAAAGAAAAATCTGCAAAATCAAGAGATCTTCTACCATAAAAAATAAATGATAGAAGAAAAACATAAGATCCCATTTTGCATTTGCCTCGCTCTTTATGTCAAGGTTTTACGTGGTATGAGCGTCTGGAAACTATGCTATTTCATTTTCAGTGTTGTAGGAATTTATAAACTGTGGCCGTTGACTGTTAGATATGGTGTTTTTTCCCCTTTTCAGTTAGTAGGGTTTAGGGTTGAAAACAAACAAAGAACTTCACAAAACAGCAGCCAATATTTAAATCTTTAGGATTTTAGAATTCTATTCAATCTTATCTATCTTTTAGTTTCTGTACAAGTCTCATTTCTACTCATCTATGTTTTGCTTGTGTAAATAAACCATGTATAATATATATACATATATTTTTATATATAGTGCGTCTCACAAAAAGAATCTTGTGCCTTCTTGTGCACCTTGCGCCTAGGCTCCAGAGTTTCATTGTGTCTTTGTGCGTCTCGGGCATCTCCAATGAAACATGAAATCTAATAGGTCTTTGACCCATATAAATTAATTTTTCAGTTTTTGAAAATATTTTAGGAATCTGTTAGACACAAAGTTAAAAGTTGACTTGGTAGATACTTTATAAACATTTTAGACATTTTTAAAGTTCCTTGACATTTTTGGTATCGACTTGAAAGCCTAAGGACTAAACTTATAATTTAACCCAACTATAATTATTCCCCAATTAAAATCACTACTCTAACATAACTTTAGATCCTGCTTTTATTGATTGCTTTTGAAGTGTCTGCTTTGCCATCATTGTAGGGAGTTTCGTTGTAGTTGATGAAAGTGGAAAGAAGAATGCTCTTGAATCTGGAAGCAAGGTGGCATGCATTGTTTCTCGAGTTCTATATTTTGAACAAATTCGTGAGCTTCAAAAATCCCCAGAATGGTATGTTTTATTATATCAAATTTCAACCTATTCACGTTTAAATGGATTAGGCATTGCTTGATAAATTTTTGAATTCCATTAATCGATCAAACAAATATGAGGGTCTTGCTTATGATCGAGCAGATGTCCCTTCACAAATATTTAGAAGCAAGAATTAACTTTGTTCTTAACTGTGTGAAAACGGTGAAGCAGATGGTAAATTTATTTATATGATTGAAATTAGATAAAGATAACAATCAAATAGATGTGCCACGCTATTAATTCTATCGCGTTCTTGCATGACAAAAATATCACTGTTAGTAGTTTATGTCGTGCCCTTGTGTCATTGCTTTTTTCCTCTACTGTGCGTGCAGGCTGAAATTGGAAATAAACCTACCACTTTAAACCACCTAGGCTGGACTAATGGTCAATATTAATCATACAAGTAATGAAATTAGAGAAAATAGGTTCAATTCATAACCGTCACCTACTTAAAATGTAATATCTTATGAACTATCTTGTCAATAGAAAAATGAACTAGAGTTGGATTGTTTTATGAAAATAGCTAAAAGTGTATACAAGTTGATTTGGACACACTCGGATATCCATAAGAAAAACACCAATTAAATTGAGTTGGACATATTTGTTTGAAAATTTCTTACCCCAGCCCAGCTTGTTTTTCTTAAACTGGTGGGTTAATATTCCACACCTTTTTGTACCAATGAATTGCAGGCCAGAAATCTTCAAGAATGCAATTGTTGGAGATCGAAACGAAAATCTTCAAGCACAAAATAATCAACCAGGGGAGGATGAGGTCAATTCAAGTGATGATGATGGCCTTCCCCCTCTAGAAGCCAACACGAACAGAGCTAAACCGTTAATATTACAACCGGATGCAGAATCAGAGTCTGATTCAGATTCTTAACTTGTATATTAATTTTAACTCTACACTTTTTTATTTAATTACCATGAGCATTCATTTTGATTGTTTGTACTACAATTAAAAATTTTAATTTTGTAATTAACAGAAATTTCTGA

mRNA sequence

ATGAAAGGTGGGAGAAAGAACTTACAGCGGGCATCGGAGCATCATATCGCAAGCCTCGAAGATGGTCATAGTATTATGCAGGTTGTCTCAATTCGTGGTTCCAATCTAATTGAGGTAATGGATGCACAAGGTGAGAAATCACTGGCATTATTTCCTGCCAAGTTTCAAAAGAGTATGTGGATAAAACGAGGGAGTTTCGTTGTAGTTGATGAAAGTGGAAAGAAGAATGCTCTTGAATCTGGAAGCAAGGTGGCATGCATTGTTTCTCGAGTTCTATATTTTGAACAAATTCGTGAGCTTCAAAAATCCCCAGAATGGCCAGAAATCTTCAAGAATGCAATTGTTGGAGATCGAAACGAAAATCTTCAAGCACAAAATAATCAACCAGGGGAGGATGAGGTCAATTCAAGTGATGATGATGGCCTTCCCCCTCTAGAAGCCAACACGAACAGAGCTAAACCGTTAATATTACAACCGGATGCAGAATCAGAGTCTGATTCAGATTCTTAA

Coding sequence (CDS)

ATGAAAGGTGGGAGAAAGAACTTACAGCGGGCATCGGAGCATCATATCGCAAGCCTCGAAGATGGTCATAGTATTATGCAGGTTGTCTCAATTCGTGGTTCCAATCTAATTGAGGTAATGGATGCACAAGGTGAGAAATCACTGGCATTATTTCCTGCCAAGTTTCAAAAGAGTATGTGGATAAAACGAGGGAGTTTCGTTGTAGTTGATGAAAGTGGAAAGAAGAATGCTCTTGAATCTGGAAGCAAGGTGGCATGCATTGTTTCTCGAGTTCTATATTTTGAACAAATTCGTGAGCTTCAAAAATCCCCAGAATGGCCAGAAATCTTCAAGAATGCAATTGTTGGAGATCGAAACGAAAATCTTCAAGCACAAAATAATCAACCAGGGGAGGATGAGGTCAATTCAAGTGATGATGATGGCCTTCCCCCTCTAGAAGCCAACACGAACAGAGCTAAACCGTTAATATTACAACCGGATGCAGAATCAGAGTCTGATTCAGATTCTTAA

Protein sequence

MKGGRKNLQRASEHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMWIKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNENLQAQNNQPGEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS*

Homology

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BLAST of Csa5G218810 vs. Swiss-Prot
Match: EIF1A_DANRE (Probable RNA-binding protein EIF1AD OS=Danio rerio GN=eif1ad PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.5e-19
Identity = 59/158 (37.34%), Postives = 88/158 (55.70%), Query Frame = 1


Query: 13  EHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMWIKRGSFVVVDES 72
           E ++   ED   IM+V+   G+NL E +   GE+ L   P KF+K++WIKRG FV+VD  
Sbjct: 16  EDYVTPTED-QQIMRVLGSNGNNLHEAVTGSGERFLLSMPTKFRKNIWIKRGDFVIVD-- 75

Query: 73  GKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIF-KNAIVGDRNENLQAQNNQPGE 132
                ++ G KV   +S +LY + I+ L+K   WPE F ++   G+RNE  Q + ++  E
Sbjct: 76  ----PIKEGGKVKGEISFILYRDHIQHLRKLGVWPEGFQEDRTSGERNEGTQKERSEEKE 135

Query: 133 DEVNSSD-DDGLPPLEANTNRAKPLILQPDAESESDSD 169
           +E   S+ +D    L  NTNRA   +L  ++E E+D D
Sbjct: 136 EEEGDSESEDDDSDLFVNTNRA--TVLYSESEEETDED 164

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BLAST of Csa5G218810 vs. Swiss-Prot
Match: EIF1A_BOVIN (Probable RNA-binding protein EIF1AD OS=Bos taurus GN=EIF1AD PE=2 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 6.5e-18
Identity = 61/161 (37.89%), Postives = 85/161 (52.80%), Query Frame = 1


Query: 13  EHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMWIKRGSFVVVDES 72
           EH + S  D   I++V+   G+NL EV  AQG++ L   P+K++K++WIKRG F++VD  
Sbjct: 17  EHMVPS--DQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVD-- 76

Query: 73  GKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE-NLQAQNNQPGE 132
                +E G KV   +S VL  + +R LQK   WPE F      D N+ N Q Q   P E
Sbjct: 77  ----PIEEGEKVKAEISFVLCKDHVRSLQKDGHWPEAFSQVTEKDNNDRNRQTQPELPAE 136

Query: 133 ----DEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSD 169
                E +SS+DD    L  NTNR +      ++E ES+ +
Sbjct: 137 PQSSGEESSSEDDS--DLFVNTNRRQ----YHESEEESEEE 163

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BLAST of Csa5G218810 vs. Swiss-Prot
Match: EIF1A_MACFA (Probable RNA-binding protein EIF1AD OS=Macaca fascicularis GN=EIF1AD PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 8.5e-18
Identity = 60/160 (37.50%), Postives = 83/160 (51.88%), Query Frame = 1


Query: 13  EHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMWIKRGSFVVVDES 72
           EH + S  D   I++V+   G+NL EV  AQG++ L   P+K++K++WIKRG F++VD  
Sbjct: 17  EHIVPS--DQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVD-- 76

Query: 73  GKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNENLQAQNNQPGE- 132
                +E G KV   +S VL  + +R LQK   WPE F        N N Q Q   P E 
Sbjct: 77  ----PIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAFSEVAEKHNNRNRQTQPELPAEP 136

Query: 133 ---DEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSD 169
               E +SS+DD    L  NTNR +      ++E ES+ +
Sbjct: 137 QLSGEESSSEDDS--DLFVNTNRRQ----YHESEEESEEE 162

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BLAST of Csa5G218810 vs. Swiss-Prot
Match: EIF1A_HUMAN (Probable RNA-binding protein EIF1AD OS=Homo sapiens GN=EIF1AD PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 8.5e-18
Identity = 60/160 (37.50%), Postives = 83/160 (51.88%), Query Frame = 1


Query: 13  EHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMWIKRGSFVVVDES 72
           EH + S  D   I++V+   G+NL EV  AQG++ L   P+K++K++WIKRG F++VD  
Sbjct: 17  EHIVPS--DQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVD-- 76

Query: 73  GKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNENLQAQNNQPGE- 132
                +E G KV   +S VL  + +R LQK   WPE F        N N Q Q   P E 
Sbjct: 77  ----PIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAFSEVAEKHNNRNRQTQPELPAEP 136

Query: 133 ---DEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSD 169
               E +SS+DD    L  NTNR +      ++E ES+ +
Sbjct: 137 QLSGEESSSEDDS--DLFVNTNRRQ----YHESEEESEEE 162

[Close]

BLAST of Csa5G218810 vs. Swiss-Prot
Match: EIF1A_MOUSE (Probable RNA-binding protein EIF1AD OS=Mus musculus GN=Eif1ad PE=1 SV=2)

HSP 1 Score: 90.9 bits (224), Expect = 1.5e-17
Identity = 58/160 (36.25%), Postives = 83/160 (51.88%), Query Frame = 1


Query: 13  EHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMWIKRGSFVVVDES 72
           EH + S  D   I++V+   G+NL EV  AQG++ L   P+K++K++WIKRG F++VD  
Sbjct: 17  EHMVPS--DHQQIVKVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVD-- 76

Query: 73  GKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNENLQAQNNQPGED 132
                +E G KV   +S VL    +R LQK   WPE F        N N ++Q   P E 
Sbjct: 77  ----PIEEGEKVKAEISFVLCKNHVRSLQKEGHWPEAFSEVAEKQNNMNRESQPELPAEP 136

Query: 133 EV----NSSDDDGLPPLEANTNRAKPLILQPDAESESDSD 169
           ++    +SS+DD    L  NTN  +      ++E ES+ D
Sbjct: 137 QLSGEGSSSEDDS--DLFVNTNHRQ----YHESEEESEED 162

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BLAST of Csa5G218810 vs. TrEMBL
Match: A0A0A0KM30_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G218810 PE=4 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 2.2e-89
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 1


Query: 1   MKGGRKNLQRASEHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           MKGGRKNLQRASEHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLQRASEHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE 120
           IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE
Sbjct: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE 120

Query: 121 NLQAQNNQPGEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS 170
           NLQAQNNQPGEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS
Sbjct: 121 NLQAQNNQPGEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS 169

[Close]

BLAST of Csa5G218810 vs. TrEMBL
Match: A0A067JCS2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03302 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 9.7e-61
Identity = 122/169 (72.19%), Postives = 141/169 (83.43%), Query Frame = 1


Query: 1   MKGGRKNLQRASEHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           MKGGRKNL+RA+E H  +LEDG SI QVVS+RGSN+IEVMDA+GEKSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLKRAAEEHNLTLEDGKSIAQVVSLRGSNVIEVMDARGEKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE 120
           IKRGSFVVVDESGK+ ALESGSKVACIVS+VL++EQ+R L+KS EWPEIFK+    D N 
Sbjct: 61  IKRGSFVVVDESGKQKALESGSKVACIVSQVLFYEQVRALRKSLEWPEIFKSTTSDDSNG 120

Query: 121 NLQAQNNQPGEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS 170
           +L    +Q  +DE +SSDDDGLPPLEAN NR KP   Q DAES+S SD+
Sbjct: 121 SLHKSTSQQEDDEFDSSDDDGLPPLEANMNRIKPPEFQSDAESKSGSDT 169

[Close]

BLAST of Csa5G218810 vs. TrEMBL
Match: A0A151SG33_CAJCA (Putative RNA-binding protein EIF1AD OS=Cajanus cajan GN=KK1_024340 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 8.2e-60
Identity = 119/171 (69.59%), Postives = 141/171 (82.46%), Query Frame = 1


Query: 1   MKGGRKNLQRASEHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           M+GGRKNL+RA+E    +L+DG SIMQV+S+RGSNLIEVMDA G KSLALFPAKFQ+SMW
Sbjct: 1   MRGGRKNLKRATEEKHITLQDGQSIMQVLSLRGSNLIEVMDASGNKSLALFPAKFQRSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE 120
           IKRGSFVVVDESGK+ ALESGSKVACIVS+VL++EQ+RELQKSPEWPE FK+  + D N 
Sbjct: 61  IKRGSFVVVDESGKEKALESGSKVACIVSQVLFYEQVRELQKSPEWPEKFKSETLDDSNS 120

Query: 121 NLQAQNNQPG--EDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS 170
           N +  + Q    EDE+  SDDDGLPPLEANTNR +P  L+ D +SES SD+
Sbjct: 121 NERTASQQENEREDEMEGSDDDGLPPLEANTNRMRPFELEADEDSESSSDT 171

[Close]

BLAST of Csa5G218810 vs. TrEMBL
Match: W9QLB9_9ROSA (Putative RNA-binding protein EIF1AD OS=Morus notabilis GN=L484_009914 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 5.3e-59
Identity = 115/169 (68.05%), Postives = 144/169 (85.21%), Query Frame = 1


Query: 1   MKGGRKNLQRASEHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           MKGGRKNL+RA+E    +LE+GH+IMQV+S+RGSNLIEVMDAQG+KSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLKRATEEESLTLEEGHNIMQVLSLRGSNLIEVMDAQGKKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE 120
           IKRGSFVVVD+SGK+ A+ESGSKV CIVS+VL++EQ+R LQKSPEWPE+FK+ ++ D N 
Sbjct: 61  IKRGSFVVVDDSGKEKAIESGSKVTCIVSKVLFYEQLRALQKSPEWPEVFKSTVLDDSNG 120

Query: 121 NLQAQNNQPGEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS 170
           +++ + +Q    E  SSD+DGLPPLEANTNR +P  L  +++S SDSDS
Sbjct: 121 SMERETSQ---QEGESSDNDGLPPLEANTNRIRPYELCAESDSGSDSDS 166

[Close]

BLAST of Csa5G218810 vs. TrEMBL
Match: M5XKZ2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012453mg PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.2e-58
Identity = 118/169 (69.82%), Postives = 138/169 (81.66%), Query Frame = 1


Query: 1   MKGGRKNLQRASEHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           MKGGRKNL+RA E    +L+DGHSIMQV+S+RGSNLIE+MD QGEKSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLKRAVEEESLTLKDGHSIMQVLSLRGSNLIEIMDGQGEKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE 120
           IKRGSFVVVD SGK+  LESGSKV CIVS+VL++EQ+R L+KSPEWPEIFK+ +    N 
Sbjct: 61  IKRGSFVVVDASGKEKVLESGSKVGCIVSQVLFYEQVRVLKKSPEWPEIFKSTVSDGCNA 120

Query: 121 NLQAQNNQPGEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS 170
           +LQ   +Q  E+E  SSDDDGLPPLEAN NR KP+  + D ES SDSD+
Sbjct: 121 SLQGDTSQQEENE--SSDDDGLPPLEANMNRMKPVDWKSDTESNSDSDT 167

[Close]

BLAST of Csa5G218810 vs. TAIR10
Match: AT2G40780.1 (AT2G40780.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 191.0 bits (484), Expect = 5.8e-49
Identity = 99/171 (57.89%), Postives = 131/171 (76.61%), Query Frame = 1


Query: 1   MKGGRKNLQRASEHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           M  GR+NL++A+     +LE+  SI QVVS+RGSN IE+MDA+GE SLALFPAKF++SMW
Sbjct: 1   MNRGRRNLKQAASDQDFTLEECQSIAQVVSLRGSNQIEIMDAKGENSLALFPAKFRESMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNA--IVGDR 120
           I+RGSFVV+D +GK+ A ESGSKV  IV +VL+FEQ+R LQKSPEWPEIFK+   I  ++
Sbjct: 61  IRRGSFVVIDHTGKEKAQESGSKVTSIVCKVLFFEQVRLLQKSPEWPEIFKDTRPIPAEK 120

Query: 121 NENLQAQNNQPGEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS 170
           +  ++ Q+   GE + +S DDDG+PPL+ANTNR +P  ++ DAE++S SDS
Sbjct: 121 SSPIE-QHEDDGEVD-SSDDDDGMPPLQANTNRLRPFGVKCDAETDSGSDS 169

[Close]

BLAST of Csa5G218810 vs. NCBI nr
Match: gi|449457427|ref|XP_004146450.1| (PREDICTED: probable RNA-binding protein EIF1AD [Cucumis sativus])

HSP 1 Score: 336.3 bits (861), Expect = 3.2e-89
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 1


Query: 1   MKGGRKNLQRASEHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           MKGGRKNLQRASEHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLQRASEHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE 120
           IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE
Sbjct: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE 120

Query: 121 NLQAQNNQPGEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS 170
           NLQAQNNQPGEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS
Sbjct: 121 NLQAQNNQPGEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS 169

[Close]

BLAST of Csa5G218810 vs. NCBI nr
Match: gi|659114116|ref|XP_008456911.1| (PREDICTED: probable RNA-binding protein EIF1AD [Cucumis melo])

HSP 1 Score: 318.5 bits (815), Expect = 6.9e-84
Identity = 161/169 (95.27%), Postives = 163/169 (96.45%), Query Frame = 1


Query: 1   MKGGRKNLQRASEHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           MKGGRKNLQRASEHHIASLEDGHSIM VVSIRGSNLIEVMDAQG KSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLQRASEHHIASLEDGHSIMLVVSIRGSNLIEVMDAQGGKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE 120
           IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQ+RELQKSP WPEIFKNAIVGDRNE
Sbjct: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPGWPEIFKNAIVGDRNE 120

Query: 121 NLQAQNNQPGEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS 170
           NL+AQNNQ  EDEVNSSDDDGLPPLEANTNRAKPLILQPD ESESDSDS
Sbjct: 121 NLRAQNNQSEEDEVNSSDDDGLPPLEANTNRAKPLILQPDGESESDSDS 169

[Close]

BLAST of Csa5G218810 vs. NCBI nr
Match: gi|802778340|ref|XP_012091122.1| (PREDICTED: probable RNA-binding protein EIF1AD [Jatropha curcas])

HSP 1 Score: 241.1 bits (614), Expect = 1.4e-60
Identity = 122/169 (72.19%), Postives = 141/169 (83.43%), Query Frame = 1


Query: 1   MKGGRKNLQRASEHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           MKGGRKNL+RA+E H  +LEDG SI QVVS+RGSN+IEVMDA+GEKSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLKRAAEEHNLTLEDGKSIAQVVSLRGSNVIEVMDARGEKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE 120
           IKRGSFVVVDESGK+ ALESGSKVACIVS+VL++EQ+R L+KS EWPEIFK+    D N 
Sbjct: 61  IKRGSFVVVDESGKQKALESGSKVACIVSQVLFYEQVRALRKSLEWPEIFKSTTSDDSNG 120

Query: 121 NLQAQNNQPGEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS 170
           +L    +Q  +DE +SSDDDGLPPLEAN NR KP   Q DAES+S SD+
Sbjct: 121 SLHKSTSQQEDDEFDSSDDDGLPPLEANMNRIKPPEFQSDAESKSGSDT 169

[Close]

BLAST of Csa5G218810 vs. NCBI nr
Match: gi|645256904|ref|XP_008234164.1| (PREDICTED: probable RNA-binding protein EIF1AD [Prunus mume])

HSP 1 Score: 240.0 bits (611), Expect = 3.1e-60
Identity = 118/169 (69.82%), Postives = 141/169 (83.43%), Query Frame = 1


Query: 1   MKGGRKNLQRASEHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           MKGGRKNL+RA E    +L+DGHSIMQV+S+RGSNLIE+MD QGEKSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLKRAVEEDSLTLKDGHSIMQVLSLRGSNLIEIMDGQGEKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE 120
           IKRGSFVVVD SGK+  LESGSKV CIVS+VL++EQ+R L+KSPEWPEIFK+ +    + 
Sbjct: 61  IKRGSFVVVDASGKEKVLESGSKVGCIVSQVLFYEQVRVLKKSPEWPEIFKSTVSDGCHA 120

Query: 121 NLQAQNNQPGEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS 170
           +LQ   +Q  E+E++SSDDDGLPPLEANTNR KP+  + D ES SDSD+
Sbjct: 121 SLQGDTSQQEENELDSSDDDGLPPLEANTNRMKPVDWKSDTESNSDSDT 169

[Close]

BLAST of Csa5G218810 vs. NCBI nr
Match: gi|1012342573|gb|KYP53766.1| (putative RNA-binding protein EIF1AD [Cajanus cajan])

HSP 1 Score: 238.0 bits (606), Expect = 1.2e-59
Identity = 119/171 (69.59%), Postives = 141/171 (82.46%), Query Frame = 1


Query: 1   MKGGRKNLQRASEHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           M+GGRKNL+RA+E    +L+DG SIMQV+S+RGSNLIEVMDA G KSLALFPAKFQ+SMW
Sbjct: 1   MRGGRKNLKRATEEKHITLQDGQSIMQVLSLRGSNLIEVMDASGNKSLALFPAKFQRSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE 120
           IKRGSFVVVDESGK+ ALESGSKVACIVS+VL++EQ+RELQKSPEWPE FK+  + D N 
Sbjct: 61  IKRGSFVVVDESGKEKALESGSKVACIVSQVLFYEQVRELQKSPEWPEKFKSETLDDSNS 120

Query: 121 NLQAQNNQPG--EDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS 170
           N +  + Q    EDE+  SDDDGLPPLEANTNR +P  L+ D +SES SD+
Sbjct: 121 NERTASQQENEREDEMEGSDDDGLPPLEANTNRMRPFELEADEDSESSSDT 171

The following BLAST results are available for this feature:

BLAST of Csa5G218810 vs. Swiss-Prot


Match Name	E-value	Identity	Description
EIF1A_DANRE	3.5e-19	37.34	Probable RNA-binding protein EIF1AD OS=Danio rerio GN=eif1ad PE=2 SV=1	[more]
EIF1A_BOVIN	6.5e-18	37.89	Probable RNA-binding protein EIF1AD OS=Bos taurus GN=EIF1AD PE=2 SV=1	[more]
EIF1A_MACFA	8.5e-18	37.50	Probable RNA-binding protein EIF1AD OS=Macaca fascicularis GN=EIF1AD PE=2 SV=1	[more]
EIF1A_HUMAN	8.5e-18	37.50	Probable RNA-binding protein EIF1AD OS=Homo sapiens GN=EIF1AD PE=1 SV=1	[more]
EIF1A_MOUSE	1.5e-17	36.25	Probable RNA-binding protein EIF1AD OS=Mus musculus GN=Eif1ad PE=1 SV=2	[more]

BLAST of Csa5G218810 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KM30_CUCSA	2.2e-89	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G218810 PE=4 SV=1	[more]
A0A067JCS2_JATCU	9.7e-61	72.19	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03302 PE=4 SV=1	[more]
A0A151SG33_CAJCA	8.2e-60	69.59	Putative RNA-binding protein EIF1AD OS=Cajanus cajan GN=KK1_024340 PE=4 SV=1	[more]
W9QLB9_9ROSA	5.3e-59	68.05	Putative RNA-binding protein EIF1AD OS=Morus notabilis GN=L484_009914 PE=4 SV=1	[more]
M5XKZ2_PRUPE	1.2e-58	69.82	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012453mg PE=4 SV=1	[more]

BLAST of Csa5G218810 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G40780.1	5.8e-49	57.89	Nucleic acid-binding, OB-fold-like protein	[more]

BLAST of Csa5G218810 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449457427\|ref\|XP_004146450.1\|	3.2e-89	100.00	PREDICTED: probable RNA-binding protein EIF1AD [Cucumis sativus]	[more]
gi\|659114116\|ref\|XP_008456911.1\|	6.9e-84	95.27	PREDICTED: probable RNA-binding protein EIF1AD [Cucumis melo]	[more]
gi\|802778340\|ref\|XP_012091122.1\|	1.4e-60	72.19	PREDICTED: probable RNA-binding protein EIF1AD [Jatropha curcas]	[more]
gi\|645256904\|ref\|XP_008234164.1\|	3.1e-60	69.82	PREDICTED: probable RNA-binding protein EIF1AD [Prunus mume]	[more]
gi\|1012342573\|gb\|KYP53766.1\|	1.2e-59	69.59	putative RNA-binding protein EIF1AD [Cajanus cajan]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001253	TIF_eIF-1A
IPR006196	RNA-binding_domain_S1_IF1
IPR012340	NA-bd_OB-fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0003743	translation initiation factor activity
GO:0003723	RNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006413	translational initiation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006626	protein targeting to mitochondrion
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0003723	RNA binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU085790	cucumber EST collection version 3.0	transcribed_cluster
CU096417	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa5G218810.1	Csa5G218810.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU096417	CU096417	transcribed_cluster
CU085790	CU085790	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001253	Translation initiation factor 1A (eIF-1A)	SMART	SM00652	eIF1neu4	coord: 18..107 score: 4.1
IPR006196	RNA-binding domain, S1, IF1 type	PFAM	PF01176	eIF-1a	coord: 23..72 score: 1.1
IPR006196	RNA-binding domain, S1, IF1 type	PROFILE	PS50832	S1_IF1_TYPE	coord: 12..92 score: 9
IPR012340	Nucleic acid-binding, OB-fold	GENE3D	G3DSA:2.40.50.140		coord: 5..139 score: 6.2
IPR012340	Nucleic acid-binding, OB-fold	unknown	SSF50249	Nucleic acid-binding proteins	coord: 9..140 score: 2.34
None	No IPR available	PANTHER	PTHR21641	TRANSLATION INITIATION FACTOR-RELATED	coord: 1..169 score: 4.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa5G218810	Cla007268	Watermelon (97103) v1	cuwmB387
Csa5G218810	MELO3C020110	Melon (DHL92) v3.5.1	cumeB369
Csa5G218810	ClCG07G004830	Watermelon (Charleston Gray)	cuwcgB402
Csa5G218810	Lsi04G010410	Bottle gourd (USVL1VR-Ls)	culsiB369
Csa5G218810	MELO3C020110.2	Melon (DHL92) v3.6.1	cumedB349
Csa5G218810	Cla97C07G133250	Watermelon (97103) v2	cuwmbB392
Csa5G218810	Bhi07G000437	Wax gourd	cuwgoB513
Csa5G218810	CSPI05G11320	Wild cucumber (PI 183967)	cpicuB240
Csa5G218810	Cucsa.144150	Cucumber (Gy14) v1	cgycuB209
Csa5G218810	CmaCh04G010800	Cucurbita maxima (Rimu)	cmacuB746
Csa5G218810	CmoCh04G011450	Cucurbita moschata (Rifu)	cmocuB736
Csa5G218810	Cp4.1LG01g11540	Cucurbita pepo (Zucchini)	cpecuB437
Csa5G218810	CsGy5G008590	Cucumber (Gy14) v2	cgybcuB224
Csa5G218810	Carg00182	Silver-seed gourd	carcuB0694

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa5G218810	Cucumber (Chinese Long) v2	cucuB163
Csa5G218810	Cucurbita maxima (Rimu)	cmacuB747
Csa5G218810	Cucurbita moschata (Rifu)	cmocuB737
Csa5G218810	Watermelon (Charleston Gray)	cuwcgB361
Csa5G218810	Cucurbita pepo (Zucchini)	cpecuB438
Csa5G218810	Bottle gourd (USVL1VR-Ls)	culsiB361
Csa5G218810	Cucumber (Gy14) v2	cgybcuB277
Csa5G218810	Silver-seed gourd	carcuB0926
Csa5G218810	Watermelon (97103) v2	cuwmbB365