CmaCh04G010800 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G010800
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Probable RNA-binding protein EIF1AD
Location	Cma_Chr04 : 5564201 .. 5566420 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAGAAAAAAAAAAAGAAGAAGACATGGTGTATTAGCCCATCGGAGGAACCCTAAGTCTTCTCATCTCACTTCAGACCGCCCCACCGTACGTTCACTACCGTTCTCATCTCACTCCACCGGCGCCCGGCGGCCCCCCACCTCCCAACTCTAATCTCTTCTCTTCCCTTGTTAGAAGAAGAACTCTAGTTGAACTGAGTCACGGACAGAGCATGAAGGGTGGAAGAAAGAACTTGCAGAGGGCATCAAATCAACATATCGTAGGCCTCGAAGATGGTCATAGCATTATGCAGGTTGTCTCAGTTCGTGGTTCCAATCTAATCGAGGTACCTTCCTCTTTACTCGATTCTACTCTCTCTGGTTTCTATTTTTTTTAACCTACTCTATCTCATAGTCGATTATTTTCTTCACAATTTTGCGCTTCTGCTATTGCCTACTGCGTTGCATCAATCCACCTGAATGAAAAAGTCCTTCAATTCCAGCAAATTATAGGCCGACCTTTTGATTTCAAATTTTAAATTTTAGCATATTTGATTATGATGTTATATAGTGTGTTTGATATTTACAAACTATTTATTAAGTGGTTTTGATATGCATGTCGTGTTGCAATTGCTTTGTAGAAAGCGTACTTTTAATTAAGCATTGATATGGAGGAAACAATAATCTGTGTAGTTTCTCAGTTTCCTGCGCAAATTTGTCCATTACTTTGGCAATTATTATAAGCGGGTTGCTTTGCTTTCTATGGTACTCCGGAAAATCTTTGATACAAATTTGTATTCCTTCATCATCTTTAGGTAATGGATGCACAAGGTGAGAAATCACTGGCATTATTTCCTGCCAAGTTCCAAAAGAGTATGTGGATAAAACGAGGTATGATCTATACCCATTCTACTCAGTTTCGCCCTCGCGTTAAATTTCCTTCTTTTTATCTCTGGAAAAACAAGAGACCCCTTTCCACATTTGCGTCGCTCTTTGTATCAAGGTTTCACGTAATAAGCTTCACTGTGAACGTCGGGAAACTATGTTGTTTCAGTGTTATTGGAATTCATAAATTGCACCTGTTAAACGTCGGTTATGGCCATTTTTGTGCCTCTGATTTAGTAGCTTGGCCATATTCATTGAAACATAGAGATCTTTTTAGATCATCTTGGACAGTTTGTTAGGACCTCAATCTTAACAAAACAAGCTTAAATTTTACTCCGATGTGAAGAACTAAGCGTTGTTTGCTTTGGCATCATTGCAGGGAGTTTCGTTGTAGTTGATGAAAGTGGAAAAAAGAATGCTCTTGAATCTGGAAGCAAGGTGGCATGCATTGTTTCTCGAGTTCTATATTTTGAACAAGTCCGCGAGCTTCAAAAATCTCCGGAATGGTATGTTATCAACCTATTCATTAAAATGGATCTGGCATCGCTCTTAGATTTACCCCATTTCGACTCATTAATAATAAAAAAAACGTTCGAGGGTCTCGCTTTATGATTGAACCGATGTCTCTTTACAAATATTTAGAAGCATGAAAATAACTGTAGTAAAAAAGTGACATACAGGCTACATTTTTATTTCTATTGGTTGTCTTGAGAGAATAGTCGAAGTGCATGCAAGTTAACTCACACTCGAACTATCTTTGTTTGAAGACTGACTACCTAAATTGGTTCGGATATCCCTACTTTCCCCGTGGAGATCCGATTTCCTAACGGGATAAAACCCTTCCACAAGGACGGAGAGTGTAATCCCCACGGCCGTGTTACCGTTACTAGATTTAAGAAAGTTGGTTTCATGCACAGTTTTTTTTCCCCCTCCTCAAACTCAGATTAATTTGATGTCGGACTTAACTGATCCATTTACCTCCCTTCTTTTTACCAATCTACGGCAGGCCAGAAATCTTCAAGAATGCAATCACTGGAGATCAAAACGAAAATCTGCAAGCAGAGAATAATCGACAGGAAGAGGACGAAATCGACTCGAGTGATGATGATGGCCTTCCCCCTCTAGAAGCCAACACGAACAGAGCTAAACCATTAATATTACAACCAGAAGAAGAAACAGAGTCTGATTCAGATTCTTAACTTGCATATTAATTTGAAGTCCATAATTTTGATTTAGTACTCATTTTGATCGTTTGTCCTTCAAGTTTAATTTTGTAATTAACAGAAATTTGAACTAACTGCATTTTTTTCATCTGTTATAATATTTTATCTATGCAGTTTGAATATCAAATACAAA

mRNA sequence

AAAAAGAAAAAAAAAAAGAAGAAGACATGGTGTATTAGCCCATCGGAGGAACCCTAAGTCTTCTCATCTCACTTCAGACCGCCCCACCGTACGTTCACTACCGTTCTCATCTCACTCCACCGGCGCCCGGCGGCCCCCCACCTCCCAACTCTAATCTCTTCTCTTCCCTTGTTAGAAGAAGAACTCTAGTTGAACTGAGTCACGGACAGAGCATGAAGGGTGGAAGAAAGAACTTGCAGAGGGCATCAAATCAACATATCGTAGGCCTCGAAGATGGTCATAGCATTATGCAGGTTGTCTCAGTTCGTGGTTCCAATCTAATCGAGGTAATGGATGCACAAGGTGAGAAATCACTGGCATTATTTCCTGCCAAGTTCCAAAAGAGTATGTGGATAAAACGAGGGAGTTTCGTTGTAGTTGATGAAAGTGGAAAAAAGAATGCTCTTGAATCTGGAAGCAAGGTGGCATGCATTGTTTCTCGAGTTCTATATTTTGAACAAGTCCGCGAGCTTCAAAAATCTCCGGAATGGCCAGAAATCTTCAAGAATGCAATCACTGGAGATCAAAACGAAAATCTGCAAGCAGAGAATAATCGACAGGAAGAGGACGAAATCGACTCGAGTGATGATGATGGCCTTCCCCCTCTAGAAGCCAACACGAACAGAGCTAAACCATTAATATTACAACCAGAAGAAGAAACAGAGTCTGATTCAGATTCTTAACTTGCATATTAATTTGAAGTCCATAATTTTGATTTAGTACTCATTTTGATCGTTTGTCCTTCAAGTTTAATTTTGTAATTAACAGAAATTTGAACTAACTGCATTTTTTTCATCTGTTATAATATTTTATCTATGCAGTTTGAATATCAAATACAAA

Coding sequence (CDS)

ATGAAGGGTGGAAGAAAGAACTTGCAGAGGGCATCAAATCAACATATCGTAGGCCTCGAAGATGGTCATAGCATTATGCAGGTTGTCTCAGTTCGTGGTTCCAATCTAATCGAGGTAATGGATGCACAAGGTGAGAAATCACTGGCATTATTTCCTGCCAAGTTCCAAAAGAGTATGTGGATAAAACGAGGGAGTTTCGTTGTAGTTGATGAAAGTGGAAAAAAGAATGCTCTTGAATCTGGAAGCAAGGTGGCATGCATTGTTTCTCGAGTTCTATATTTTGAACAAGTCCGCGAGCTTCAAAAATCTCCGGAATGGCCAGAAATCTTCAAGAATGCAATCACTGGAGATCAAAACGAAAATCTGCAAGCAGAGAATAATCGACAGGAAGAGGACGAAATCGACTCGAGTGATGATGATGGCCTTCCCCCTCTAGAAGCCAACACGAACAGAGCTAAACCATTAATATTACAACCAGAAGAAGAAACAGAGTCTGATTCAGATTCTTAA

Protein sequence

MKGGRKNLQRASNQHIVGLEDGHSIMQVVSVRGSNLIEVMDAQGEKSLALFPAKFQKSMWIKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAITGDQNENLQAENNRQEEDEIDSSDDDGLPPLEANTNRAKPLILQPEEETESDSDS

Homology

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BLAST of CmaCh04G010800 vs. Swiss-Prot
Match: EIF1A_DANRE (Probable RNA-binding protein EIF1AD OS=Danio rerio GN=eif1ad PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.5e-19
Identity = 61/166 (36.75%), Postives = 95/166 (57.23%), Query Frame = 1


Query: 5   RKNLQRASNQHIVGLEDGHSIMQVVSVRGSNLIEVMDAQGEKSLALFPAKFQKSMWIKRG 64
           RK++ +   +  V   +   IM+V+   G+NL E +   GE+ L   P KF+K++WIKRG
Sbjct: 7   RKHVVKEVLEDYVTPTEDQQIMRVLGSNGNNLHEAVTGSGERFLLSMPTKFRKNIWIKRG 66

Query: 65  SFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPEWPEIF-KNAITGDQNENLQ 124
            FV+VD       ++ G KV   +S +LY + ++ L+K   WPE F ++  +G++NE  Q
Sbjct: 67  DFVIVD------PIKEGGKVKGEISFILYRDHIQHLRKLGVWPEGFQEDRTSGERNEGTQ 126

Query: 125 AENNRQ-EEDEIDSSDDDGLPPLEANTNRAKPLILQPEEETESDSD 169
            E + + EE+E DS  +D    L  NTNRA  L  + EEET+ D +
Sbjct: 127 KERSEEKEEEEGDSESEDDDSDLFVNTNRATVLYSESEEETDEDEE 166

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BLAST of CmaCh04G010800 vs. Swiss-Prot
Match: EIF1A_MACFA (Probable RNA-binding protein EIF1AD OS=Macaca fascicularis GN=EIF1AD PE=2 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.0e-15
Identity = 59/157 (37.58%), Postives = 84/157 (53.50%), Query Frame = 1


Query: 14  QHIVGLEDGHSIMQVVSVRGSNLIEVMDAQGEKSLALFPAKFQKSMWIKRGSFVVVDESG 73
           +HIV   D   I++V+   G+NL EV  AQG++ L   P+K++K++WIKRG F++VD   
Sbjct: 17  EHIVP-SDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVD--- 76

Query: 74  KKNALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAITGDQNENLQAENNRQEEDE 133
               +E G KV   +S VL  + VR LQK   WPE F        N N Q +     E +
Sbjct: 77  ---PIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAFSEVAEKHNNRNRQTQPELPAEPQ 136

Query: 134 I----DSSDDDGLPPLEANTNRAKPLILQPEEETESD 167
           +     SS+DD    L  NTNR +    + EEE+E +
Sbjct: 137 LSGEESSSEDDS--DLFVNTNRRQ--YHESEEESEEE 162

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BLAST of CmaCh04G010800 vs. Swiss-Prot
Match: EIF1A_HUMAN (Probable RNA-binding protein EIF1AD OS=Homo sapiens GN=EIF1AD PE=1 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.0e-15
Identity = 59/157 (37.58%), Postives = 84/157 (53.50%), Query Frame = 1


Query: 14  QHIVGLEDGHSIMQVVSVRGSNLIEVMDAQGEKSLALFPAKFQKSMWIKRGSFVVVDESG 73
           +HIV   D   I++V+   G+NL EV  AQG++ L   P+K++K++WIKRG F++VD   
Sbjct: 17  EHIVP-SDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVD--- 76

Query: 74  KKNALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAITGDQNENLQAENNRQEEDE 133
               +E G KV   +S VL  + VR LQK   WPE F        N N Q +     E +
Sbjct: 77  ---PIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAFSEVAEKHNNRNRQTQPELPAEPQ 136

Query: 134 I----DSSDDDGLPPLEANTNRAKPLILQPEEETESD 167
           +     SS+DD    L  NTNR +    + EEE+E +
Sbjct: 137 LSGEESSSEDDS--DLFVNTNRRQ--YHESEEESEEE 162

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BLAST of CmaCh04G010800 vs. Swiss-Prot
Match: EIF1A_MOUSE (Probable RNA-binding protein EIF1AD OS=Mus musculus GN=Eif1ad PE=1 SV=2)

HSP 1 Score: 82.8 bits (203), Expect = 3.9e-15
Identity = 58/165 (35.15%), Postives = 86/165 (52.12%), Query Frame = 1


Query: 8   LQRASNQHIVGLEDGHSIMQVVSVRGSNLIEVMDAQGEKSLALFPAKFQKSMWIKRGSFV 67
           +Q    +H+V   D   I++V+   G+NL EV  AQG++ L   P+K++K++WIKRG F+
Sbjct: 11  VQEVLGEHMVP-SDHQQIVKVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFL 70

Query: 68  VVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAITGDQNENLQAENN 127
           +VD       +E G KV   +S VL    VR LQK   WPE F        N N +++  
Sbjct: 71  IVD------PIEEGEKVKAEISFVLCKNHVRSLQKEGHWPEAFSEVAEKQNNMNRESQPE 130

Query: 128 RQEEDEI----DSSDDDGLPPLEANTNRAKPLILQPEEETESDSD 169
              E ++     SS+DD    L  NTN  +    + EEE+E D +
Sbjct: 131 LPAEPQLSGEGSSSEDDS--DLFVNTNHRQ--YHESEEESEEDEE 164

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BLAST of CmaCh04G010800 vs. Swiss-Prot
Match: EIF1A_BOVIN (Probable RNA-binding protein EIF1AD OS=Bos taurus GN=EIF1AD PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 6.7e-15
Identity = 60/158 (37.97%), Postives = 85/158 (53.80%), Query Frame = 1


Query: 14  QHIVGLEDGHSIMQVVSVRGSNLIEVMDAQGEKSLALFPAKFQKSMWIKRGSFVVVDESG 73
           +H+V   D   I++V+   G+NL EV  AQG++ L   P+K++K++WIKRG F++VD   
Sbjct: 17  EHMVP-SDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVD--- 76

Query: 74  KKNALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAITGDQNE-NLQAE----NNR 133
               +E G KV   +S VL  + VR LQK   WPE F      D N+ N Q +       
Sbjct: 77  ---PIEEGEKVKAEISFVLCKDHVRSLQKDGHWPEAFSQVTEKDNNDRNRQTQPELPAEP 136

Query: 134 QEEDEIDSSDDDGLPPLEANTNRAKPLILQPEEETESD 167
           Q   E  SS+DD    L  NTNR +    + EEE+E +
Sbjct: 137 QSSGEESSSEDDS--DLFVNTNRRQ--YHESEEESEEE 163

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BLAST of CmaCh04G010800 vs. TrEMBL
Match: A0A0A0KM30_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G218810 PE=4 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 1.3e-78
Identity = 152/169 (89.94%), Postives = 161/169 (95.27%), Query Frame = 1


Query: 1   MKGGRKNLQRASNQHIVGLEDGHSIMQVVSVRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           MKGGRKNLQRAS  HI  LEDGHSIMQVVS+RGSNLIEVMDAQGEKSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLQRASEHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAITGDQNE 120
           IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQ+RELQKSPEWPEIFKNAI GD+NE
Sbjct: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE 120

Query: 121 NLQAENNRQEEDEIDSSDDDGLPPLEANTNRAKPLILQPEEETESDSDS 170
           NLQA+NN+  EDE++SSDDDGLPPLEANTNRAKPLILQP+ E+ESDSDS
Sbjct: 121 NLQAQNNQPGEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS 169

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BLAST of CmaCh04G010800 vs. TrEMBL
Match: A0A067JCS2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03302 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.2e-58
Identity = 121/169 (71.60%), Postives = 143/169 (84.62%), Query Frame = 1


Query: 1   MKGGRKNLQRASNQHIVGLEDGHSIMQVVSVRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           MKGGRKNL+RA+ +H + LEDG SI QVVS+RGSN+IEVMDA+GEKSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLKRAAEEHNLTLEDGKSIAQVVSLRGSNVIEVMDARGEKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAITGDQNE 120
           IKRGSFVVVDESGK+ ALESGSKVACIVS+VL++EQVR L+KS EWPEIFK+  + D N 
Sbjct: 61  IKRGSFVVVDESGKQKALESGSKVACIVSQVLFYEQVRALRKSLEWPEIFKSTTSDDSNG 120

Query: 121 NLQAENNRQEEDEIDSSDDDGLPPLEANTNRAKPLILQPEEETESDSDS 170
           +L    ++QE+DE DSSDDDGLPPLEAN NR KP   Q + E++S SD+
Sbjct: 121 SLHKSTSQQEDDEFDSSDDDGLPPLEANMNRIKPPEFQSDAESKSGSDT 169

[Close]

BLAST of CmaCh04G010800 vs. TrEMBL
Match: A0A151SG33_CAJCA (Putative RNA-binding protein EIF1AD OS=Cajanus cajan GN=KK1_024340 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 2.9e-57
Identity = 117/171 (68.42%), Postives = 142/171 (83.04%), Query Frame = 1


Query: 1   MKGGRKNLQRASNQHIVGLEDGHSIMQVVSVRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           M+GGRKNL+RA+ +  + L+DG SIMQV+S+RGSNLIEVMDA G KSLALFPAKFQ+SMW
Sbjct: 1   MRGGRKNLKRATEEKHITLQDGQSIMQVLSLRGSNLIEVMDASGNKSLALFPAKFQRSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAITGDQNE 120
           IKRGSFVVVDESGK+ ALESGSKVACIVS+VL++EQVRELQKSPEWPE FK+    D N 
Sbjct: 61  IKRGSFVVVDESGKEKALESGSKVACIVSQVLFYEQVRELQKSPEWPEKFKSETLDDSNS 120

Query: 121 N--LQAENNRQEEDEIDSSDDDGLPPLEANTNRAKPLILQPEEETESDSDS 170
           N    ++   + EDE++ SDDDGLPPLEANTNR +P  L+ +E++ES SD+
Sbjct: 121 NERTASQQENEREDEMEGSDDDGLPPLEANTNRMRPFELEADEDSESSSDT 171

[Close]

BLAST of CmaCh04G010800 vs. TrEMBL
Match: V4TCA9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032334mg PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 8.5e-57
Identity = 116/170 (68.24%), Postives = 145/170 (85.29%), Query Frame = 1


Query: 1   MKGGRKNLQRASNQHIVGLEDGHSIMQVVSVRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           MKGGRKNL+RA+ +  + L+DG SIMQVVS+RGSNLIEV+DA+GEKSLALFPAKFQKSMW
Sbjct: 111 MKGGRKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKGEKSLALFPAKFQKSMW 170

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAITGDQNE 120
           IKRGSFVVVDESGK+ A++ GSKVACIV++VL++EQVR LQKS EWPEIFK+  + D N 
Sbjct: 171 IKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANG 230

Query: 121 NLQAEN-NRQEEDEIDSSDDDGLPPLEANTNRAKPLILQPEEETESDSDS 170
           +L+ +  N +E D+ +S DDDGLPPLEANTNR KP+ LQ + E++S+SD+
Sbjct: 231 SLERQACNHEENDQSESDDDDGLPPLEANTNRMKPMELQTQSESDSESDT 280

[Close]

BLAST of CmaCh04G010800 vs. TrEMBL
Match: W9QLB9_9ROSA (Putative RNA-binding protein EIF1AD OS=Morus notabilis GN=L484_009914 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.4e-56
Identity = 115/169 (68.05%), Postives = 144/169 (85.21%), Query Frame = 1


Query: 1   MKGGRKNLQRASNQHIVGLEDGHSIMQVVSVRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           MKGGRKNL+RA+ +  + LE+GH+IMQV+S+RGSNLIEVMDAQG+KSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLKRATEEESLTLEEGHNIMQVLSLRGSNLIEVMDAQGKKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAITGDQNE 120
           IKRGSFVVVD+SGK+ A+ESGSKV CIVS+VL++EQ+R LQKSPEWPE+FK+ +  D N 
Sbjct: 61  IKRGSFVVVDDSGKEKAIESGSKVTCIVSKVLFYEQLRALQKSPEWPEVFKSTVLDDSNG 120

Query: 121 NLQAENNRQEEDEIDSSDDDGLPPLEANTNRAKPLILQPEEETESDSDS 170
           +++ E ++QE    +SSD+DGLPPLEANTNR +P  L  E ++ SDSDS
Sbjct: 121 SMERETSQQEG---ESSDNDGLPPLEANTNRIRPYELCAESDSGSDSDS 166

[Close]

BLAST of CmaCh04G010800 vs. TAIR10
Match: AT2G40780.1 (AT2G40780.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 183.3 bits (464), Expect = 1.2e-46
Identity = 99/172 (57.56%), Postives = 133/172 (77.33%), Query Frame = 1


Query: 1   MKGGRKNLQRASNQHIVGLEDGHSIMQVVSVRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           M  GR+NL++A++     LE+  SI QVVS+RGSN IE+MDA+GE SLALFPAKF++SMW
Sbjct: 1   MNRGRRNLKQAASDQDFTLEECQSIAQVVSLRGSNQIEIMDAKGENSLALFPAKFRESMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNA--ITGDQ 120
           I+RGSFVV+D +GK+ A ESGSKV  IV +VL+FEQVR LQKSPEWPEIFK+   I  ++
Sbjct: 61  IRRGSFVVIDHTGKEKAQESGSKVTSIVCKVLFFEQVRLLQKSPEWPEIFKDTRPIPAEK 120

Query: 121 NENLQAENNRQEEDEIDSS-DDDGLPPLEANTNRAKPLILQPEEETESDSDS 170
           +  ++     +++ E+DSS DDDG+PPL+ANTNR +P  ++ + ET+S SDS
Sbjct: 121 SSPIE---QHEDDGEVDSSDDDDGMPPLQANTNRLRPFGVKCDAETDSGSDS 169

[Close]

BLAST of CmaCh04G010800 vs. NCBI nr
Match: gi|449457427|ref|XP_004146450.1| (PREDICTED: probable RNA-binding protein EIF1AD [Cucumis sativus])

HSP 1 Score: 300.4 bits (768), Expect = 1.9e-78
Identity = 152/169 (89.94%), Postives = 161/169 (95.27%), Query Frame = 1


Query: 1   MKGGRKNLQRASNQHIVGLEDGHSIMQVVSVRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           MKGGRKNLQRAS  HI  LEDGHSIMQVVS+RGSNLIEVMDAQGEKSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLQRASEHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAITGDQNE 120
           IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQ+RELQKSPEWPEIFKNAI GD+NE
Sbjct: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE 120

Query: 121 NLQAENNRQEEDEIDSSDDDGLPPLEANTNRAKPLILQPEEETESDSDS 170
           NLQA+NN+  EDE++SSDDDGLPPLEANTNRAKPLILQP+ E+ESDSDS
Sbjct: 121 NLQAQNNQPGEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS 169

[Close]

BLAST of CmaCh04G010800 vs. NCBI nr
Match: gi|659114116|ref|XP_008456911.1| (PREDICTED: probable RNA-binding protein EIF1AD [Cucumis melo])

HSP 1 Score: 293.9 bits (751), Expect = 1.8e-76
Identity = 150/169 (88.76%), Postives = 159/169 (94.08%), Query Frame = 1


Query: 1   MKGGRKNLQRASNQHIVGLEDGHSIMQVVSVRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           MKGGRKNLQRAS  HI  LEDGHSIM VVS+RGSNLIEVMDAQG KSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLQRASEHHIASLEDGHSIMLVVSIRGSNLIEVMDAQGGKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAITGDQNE 120
           IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSP WPEIFKNAI GD+NE
Sbjct: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPGWPEIFKNAIVGDRNE 120

Query: 121 NLQAENNRQEEDEIDSSDDDGLPPLEANTNRAKPLILQPEEETESDSDS 170
           NL+A+NN+ EEDE++SSDDDGLPPLEANTNRAKPLILQP+ E+ESDSDS
Sbjct: 121 NLRAQNNQSEEDEVNSSDDDGLPPLEANTNRAKPLILQPDGESESDSDS 169

[Close]

BLAST of CmaCh04G010800 vs. NCBI nr
Match: gi|645256904|ref|XP_008234164.1| (PREDICTED: probable RNA-binding protein EIF1AD [Prunus mume])

HSP 1 Score: 235.0 bits (598), Expect = 9.9e-59
Identity = 118/169 (69.82%), Postives = 145/169 (85.80%), Query Frame = 1


Query: 1   MKGGRKNLQRASNQHIVGLEDGHSIMQVVSVRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           MKGGRKNL+RA  +  + L+DGHSIMQV+S+RGSNLIE+MD QGEKSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLKRAVEEDSLTLKDGHSIMQVLSLRGSNLIEIMDGQGEKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAITGDQNE 120
           IKRGSFVVVD SGK+  LESGSKV CIVS+VL++EQVR L+KSPEWPEIFK+ ++   + 
Sbjct: 61  IKRGSFVVVDASGKEKVLESGSKVGCIVSQVLFYEQVRVLKKSPEWPEIFKSTVSDGCHA 120

Query: 121 NLQAENNRQEEDEIDSSDDDGLPPLEANTNRAKPLILQPEEETESDSDS 170
           +LQ + ++QEE+E+DSSDDDGLPPLEANTNR KP+  + + E+ SDSD+
Sbjct: 121 SLQGDTSQQEENELDSSDDDGLPPLEANTNRMKPVDWKSDTESNSDSDT 169

[Close]

BLAST of CmaCh04G010800 vs. NCBI nr
Match: gi|802778340|ref|XP_012091122.1| (PREDICTED: probable RNA-binding protein EIF1AD [Jatropha curcas])

HSP 1 Score: 234.2 bits (596), Expect = 1.7e-58
Identity = 121/169 (71.60%), Postives = 143/169 (84.62%), Query Frame = 1


Query: 1   MKGGRKNLQRASNQHIVGLEDGHSIMQVVSVRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           MKGGRKNL+RA+ +H + LEDG SI QVVS+RGSN+IEVMDA+GEKSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLKRAAEEHNLTLEDGKSIAQVVSLRGSNVIEVMDARGEKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAITGDQNE 120
           IKRGSFVVVDESGK+ ALESGSKVACIVS+VL++EQVR L+KS EWPEIFK+  + D N 
Sbjct: 61  IKRGSFVVVDESGKQKALESGSKVACIVSQVLFYEQVRALRKSLEWPEIFKSTTSDDSNG 120

Query: 121 NLQAENNRQEEDEIDSSDDDGLPPLEANTNRAKPLILQPEEETESDSDS 170
           +L    ++QE+DE DSSDDDGLPPLEAN NR KP   Q + E++S SD+
Sbjct: 121 SLHKSTSQQEDDEFDSSDDDGLPPLEANMNRIKPPEFQSDAESKSGSDT 169

[Close]

BLAST of CmaCh04G010800 vs. NCBI nr
Match: gi|1012342573|gb|KYP53766.1| (putative RNA-binding protein EIF1AD [Cajanus cajan])

HSP 1 Score: 229.6 bits (584), Expect = 4.2e-57
Identity = 117/171 (68.42%), Postives = 142/171 (83.04%), Query Frame = 1


Query: 1   MKGGRKNLQRASNQHIVGLEDGHSIMQVVSVRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           M+GGRKNL+RA+ +  + L+DG SIMQV+S+RGSNLIEVMDA G KSLALFPAKFQ+SMW
Sbjct: 1   MRGGRKNLKRATEEKHITLQDGQSIMQVLSLRGSNLIEVMDASGNKSLALFPAKFQRSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAITGDQNE 120
           IKRGSFVVVDESGK+ ALESGSKVACIVS+VL++EQVRELQKSPEWPE FK+    D N 
Sbjct: 61  IKRGSFVVVDESGKEKALESGSKVACIVSQVLFYEQVRELQKSPEWPEKFKSETLDDSNS 120

Query: 121 N--LQAENNRQEEDEIDSSDDDGLPPLEANTNRAKPLILQPEEETESDSDS 170
           N    ++   + EDE++ SDDDGLPPLEANTNR +P  L+ +E++ES SD+
Sbjct: 121 NERTASQQENEREDEMEGSDDDGLPPLEANTNRMRPFELEADEDSESSSDT 171

The following BLAST results are available for this feature:

BLAST of CmaCh04G010800 vs. Swiss-Prot


Match Name	E-value	Identity	Description
EIF1A_DANRE	1.5e-19	36.75	Probable RNA-binding protein EIF1AD OS=Danio rerio GN=eif1ad PE=2 SV=1	[more]
EIF1A_MACFA	3.0e-15	37.58	Probable RNA-binding protein EIF1AD OS=Macaca fascicularis GN=EIF1AD PE=2 SV=1	[more]
EIF1A_HUMAN	3.0e-15	37.58	Probable RNA-binding protein EIF1AD OS=Homo sapiens GN=EIF1AD PE=1 SV=1	[more]
EIF1A_MOUSE	3.9e-15	35.15	Probable RNA-binding protein EIF1AD OS=Mus musculus GN=Eif1ad PE=1 SV=2	[more]
EIF1A_BOVIN	6.7e-15	37.97	Probable RNA-binding protein EIF1AD OS=Bos taurus GN=EIF1AD PE=2 SV=1	[more]

BLAST of CmaCh04G010800 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KM30_CUCSA	1.3e-78	89.94	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G218810 PE=4 SV=1	[more]
A0A067JCS2_JATCU	1.2e-58	71.60	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03302 PE=4 SV=1	[more]
A0A151SG33_CAJCA	2.9e-57	68.42	Putative RNA-binding protein EIF1AD OS=Cajanus cajan GN=KK1_024340 PE=4 SV=1	[more]
V4TCA9_9ROSI	8.5e-57	68.24	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032334mg PE=4 SV=1	[more]
W9QLB9_9ROSA	1.4e-56	68.05	Putative RNA-binding protein EIF1AD OS=Morus notabilis GN=L484_009914 PE=4 SV=1	[more]

BLAST of CmaCh04G010800 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G40780.1	1.2e-46	57.56	Nucleic acid-binding, OB-fold-like protein	[more]

BLAST of CmaCh04G010800 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449457427\|ref\|XP_004146450.1\|	1.9e-78	89.94	PREDICTED: probable RNA-binding protein EIF1AD [Cucumis sativus]	[more]
gi\|659114116\|ref\|XP_008456911.1\|	1.8e-76	88.76	PREDICTED: probable RNA-binding protein EIF1AD [Cucumis melo]	[more]
gi\|645256904\|ref\|XP_008234164.1\|	9.9e-59	69.82	PREDICTED: probable RNA-binding protein EIF1AD [Prunus mume]	[more]
gi\|802778340\|ref\|XP_012091122.1\|	1.7e-58	71.60	PREDICTED: probable RNA-binding protein EIF1AD [Jatropha curcas]	[more]
gi\|1012342573\|gb\|KYP53766.1\|	4.2e-57	68.42	putative RNA-binding protein EIF1AD [Cajanus cajan]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001253	TIF_eIF-1A
IPR006196	RNA-binding_domain_S1_IF1
IPR012340	NA-bd_OB-fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0003743	translation initiation factor activity
GO:0003723	RNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006413	translational initiation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0006626	protein targeting to mitochondrion
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G010800.1	CmaCh04G010800.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001253	Translation initiation factor 1A (eIF-1A)	SMART	SM00652	eIF1neu4	coord: 18..107 score: 3.5
IPR006196	RNA-binding domain, S1, IF1 type	PFAM	PF01176	eIF-1a	coord: 23..72 score: 8.3
IPR006196	RNA-binding domain, S1, IF1 type	PROFILE	PS50832	S1_IF1_TYPE	coord: 12..92 score: 9
IPR012340	Nucleic acid-binding, OB-fold	GENE3D	G3DSA:2.40.50.140		coord: 5..140 score: 5.5
IPR012340	Nucleic acid-binding, OB-fold	unknown	SSF50249	Nucleic acid-binding proteins	coord: 11..140 score: 2.4
None	No IPR available	unknown	Coil	Coil	coord: 167..169 score: -coord: 112..132 scor
None	No IPR available	PANTHER	PTHR21641	TRANSLATION INITIATION FACTOR-RELATED	coord: 1..169 score: 9.5
None	No IPR available	PANTHER	PTHR21641:SF0	RNA-BINDING PROTEIN EIF1AD-RELATED	coord: 1..169 score: 9.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G010800	Cucsa.144150	Cucumber (Gy14) v1	cgycmaB0400
CmaCh04G010800	Cla007268	Watermelon (97103) v1	cmawmB690
CmaCh04G010800	Csa5G218810	Cucumber (Chinese Long) v2	cmacuB746
CmaCh04G010800	MELO3C020110	Melon (DHL92) v3.5.1	cmameB642
CmaCh04G010800	ClCG07G004830	Watermelon (Charleston Gray)	cmawcgB673
CmaCh04G010800	CSPI05G11320	Wild cucumber (PI 183967)	cmacpiB756
CmaCh04G010800	CmoCh04G011450	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G010800	Lsi04G010410	Bottle gourd (USVL1VR-Ls)	cmalsiB672
CmaCh04G010800	Cp4.1LG01g11540	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G010800	MELO3C020110.2	Melon (DHL92) v3.6.1	cmamedB742
CmaCh04G010800	CsaV3_5G010740	Cucumber (Chinese Long) v3	cmacucB0884
CmaCh04G010800	Cla97C07G133250	Watermelon (97103) v2	cmawmbB780
CmaCh04G010800	Bhi07G000437	Wax gourd	cmawgoB0889
CmaCh04G010800	CsGy5G008590	Cucumber (Gy14) v2	cgybcmaB673
CmaCh04G010800	Carg00182	Silver-seed gourd	carcmaB0948

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G010800	Cucurbita pepo (Zucchini)	cmacpeB709
CmaCh04G010800	Cucurbita pepo (Zucchini)	cmacpeB723
CmaCh04G010800	Cucurbita pepo (Zucchini)	cmacpeB745
CmaCh04G010800	Cucurbita pepo (Zucchini)	cmacpeB757
CmaCh04G010800	Bottle gourd (USVL1VR-Ls)	cmalsiB659
CmaCh04G010800	Cucumber (Gy14) v2	cgybcmaB840
CmaCh04G010800	Silver-seed gourd	carcmaB0213
CmaCh04G010800	Silver-seed gourd	carcmaB0375
CmaCh04G010800	Silver-seed gourd	carcmaB1250
CmaCh04G010800	Silver-seed gourd	carcmaB1386
CmaCh04G010800	Cucumber (Chinese Long) v3	cmacucB0912
CmaCh04G010800	Watermelon (97103) v2	cmawmbB727
CmaCh04G010800	Wax gourd	cmawgoB0864
CmaCh04G010800	Cucurbita maxima (Rimu)	cmacmaB272
CmaCh04G010800	Cucurbita maxima (Rimu)	cmacmaB326
CmaCh04G010800	Cucurbita maxima (Rimu)	cmacmaB531
CmaCh04G010800	Cucurbita maxima (Rimu)	cmacmaB533
CmaCh04G010800	Cucurbita maxima (Rimu)	cmacmaB542
CmaCh04G010800	Cucurbita moschata (Rifu)	cmacmoB682
CmaCh04G010800	Cucurbita moschata (Rifu)	cmacmoB695
CmaCh04G010800	Cucurbita moschata (Rifu)	cmacmoB731
CmaCh04G010800	Cucurbita moschata (Rifu)	cmacmoB734
CmaCh04G010800	Cucurbita moschata (Rifu)	cmacmoB749
CmaCh04G010800	Wild cucumber (PI 183967)	cmacpiB783
CmaCh04G010800	Cucumber (Chinese Long) v2	cmacuB772
CmaCh04G010800	Watermelon (Charleston Gray)	cmawcgB624
CmaCh04G010800	Watermelon (97103) v1	cmawmB740