Cp4.1LG01g11540 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g11540
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionNucleic acid-binding, OB-fold-like protein
LocationCp4.1LG01 : 5929509 .. 5933527 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGCATCCTTCGTAGACTTCTCGAAGAAATCCTCAATTTCTGCAGTACTTATGTTAGCTCTCCACGCCTTCTTCCCCTTCCTAGATCCCTTTGATTTCTTCCCCATCGCTCTGAAACTGAAGACTGAAGGTTGAAGCTTTGACAGCACAGGGAGAATAACAGGGGAGGGAAGAAAGAAGGGTGGAGCGAAAAGAGGGGGACGGGCAGGGTTTAGGTCTTTTTATTTTCCCCTTTTTTAAATATTTTTAATATGCATATTTTCTTATGATTAAAAAAAAAAAAAGAAAAAAAAGGAAGACATGGTGTATTAGCCCATCGGAGGAACCCTAAGTCTTCTCATCTCACTTCAGACCGCCCCACCGTTCGTTCACTACCGTTCTCATCTCACTCCACCGGCGCCCGGCGGCCCCCCACCTCCCACCTCTAATCTCTTCTCTTCCCTTGTTAGAAGAAGAACTCTAGTTGAACTGAGTCACGGACAGAGCATGAAGGGTGGAAGAAAGAACTTGCAGAGGGCATCAAATCAACATATCGTAGGCCTCGAAGATGGTCATAGCATTATGCAGGTTGTCTCAATTCGTGGTTCCAATCTAATCGAGGTACCTTCCTCTTTACTCGATTCTACTCTCTCTGATTTCTATTTTTTTTTTTTAACCTACTCTATTTCATAGTCAATTATTTTCTTCACAATTTTGCGCTTCTGCTATTGCCTACTGCGTTGCATCAATCCACCTGAATGAAAAAGTCCTTCAATTCCAGCAAATTATAGGCCGACCTTTTGTTTTCAAATTTTAAATTTTAGGTCTTAACTTTTAGCATGTTTGATTATCATGTTATATAGTGTGTTTGATATTTACAAACTATTTATTAAGTGATTTTGATACGCATGTCGTGTTGCAATTTCTTTGTAGAAATCGTACTTTTAATTAAGCATTGATATGGAGGAAACAATAATCTGTGTAGTTTCTGAGTTTCCTGCGCAAATTTGTCCATTACTTTGGCGATTATTATAAGCAGGTTGCTTTGCTTTCTATGGTACTTCGTAAAATCTTTGAATACAAATTTGTGTTCCTTCATCATCTTTAGGTAATGGATGCACAAGGTGAGAAATCACTGGCATTATTTCCTGCCAAGTTTCAAAAGAGCATGTGGATAAAACGAGGTATGATCTAAACCCATTCTACTCAGTTTTGCCCTCGCGTTAAATTACCTTCTTTTTATCTCTGGAAAAATAAGAGACCCCTTTCCACATTTGCCTCGCTCTTTGTATCAAGATTTCACGTAATAAGCTTCACTGTGAACGTCAGGAAACTATGTTGTTTCAGTGTTATTGGAATTCATAAACTGCACCTGTTAAACATCGGTTATGGCCATTTTTGTGCCTCTGATTTAGTAGCTTTGGCCATATTCATTAAAACATAGAGATCCTTTTAGATCATTTTGGACAGTTTGTTAGGACCTCAATCTTAAGAAAACAAGCTTAAATTTTACTCCGATGTTAAGGAGAAATTATATCGCTGGGTATCTCTCTCCCACAATCCACAATAGACTGATTTTCCTAAATTCTAATCCCTACTATTTGCCACCTGGGGTTGAGTAGTATGTTTCAAGGGCCTTTAGGCTCAAAAGGACTAATAAAGGCGGGCCTACTTTCCACTTTGTTACTATAACCGGGCTGGATGCTTGCCTAAAATTCGGGGTTCATTGATTAGTAAACCTCTGGTGCTGGTAAGGTATGGACTATGGTCATCCGTCTCCGATTTGCCATAGACAGCGATGGGTTCTCTGTCCTTGTCAGGGATGGAGCGATAGAAGTTTTGAGGTCCTTTTCTTTTAGTGCTTCGACCCGAAGCAATAGCTTCTANTGAGATGAGAGGGTTAAAAAAGGACCTTTATCATCCCACAGATCAAGCATGCCAACCTTGGCACCATCTTGAGAGGCTTCTTTGACTGTGGAAGCCTCCTCCTGTTTTTTCTTGGATTTCTTATTTACTGAAGAAGGCACTGCTTGGACAAACGGGTTCTTCGTCAATATGCTGTCACAGTAAAGGACTTTTTCTCGTTTCTTTTCTATTTTCCGCTTCACTGAAAGATCTATACAGAAAAACAGAGAAATAATAATAATTAGTGCAACCAATGACAAATCCTTTCTAACAATGTTCTTTTAAAGGAAATCAGTTTATACTCCTAAGGAACAAATATGGGATGAACGTAGGCTCAGTTCCTAAGTCGAAGCAAACAAATGCATCAGAAGGGAAAGCACAAGACCAAAACTCTAGGCTCTTCCCATGTTATCATTCAACCTCATTGAAGATACCATCCAATCGTCAGTTATGGTATACAGCAAGAGCCCACAACAAACACGTTTTCATCTCCTCTTAAGAGGAAATAGACCCTTCTTTCGAAAGCCCAAGTGCAAATTGAGAAAGAATTGAACATCTCTAAAATAATGTAATTGTTTATATGCCTGAATATTTTGCTTAATTTCAGCAATCAAAATTATCGTAATATAGGAAAAACTAATCAAAATTCTCAATTATAAGCTTTGCAGACGAAATTTGATTCAGTTCAGCGTCAAACAGAAGTTTCAGAGACCTTTGATGGATTTTGTGGATACTTTAGTTAGTGTCCTCAAAACCCAATGACGGTATTTTCACTCTTCAGTTCAACACTAAAACTCCAAACTCAATGAAAAACAATAAGTTTGCTTTACACAAAGGAGAGCACACTATAATTCAGTGGGAAGCAGGAATCAAAAGCGGAANAATAGCTTCTACGAATTATAACCCCTCCACAAACTATGAAGTAATTATGCCACAATTAATATTACTAATGTAGCACATTTACACTCCAACATAACTTCATATCCTACCTTTACTTGGATTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNGATAGGAGATTACTTTAGGGTTGTTGAAATAAGTGCTGTTTGCTTTGCCATCATTGCAGGGAGTTTCGTTGTAGTTGATGAAAGTGGAAAGAAGAATGCTCTTGAATCTGGAAGCAAGGTGGCATGCATTGTTTCTCGAGTTCTATACTTTGAACAAGTTCGCGAGCTTCAAAAATCTCCAGAATGGTATGTTATATATATCAATTTCAACCTATTCATGAAAATGGATCTGGCATCGCTTTTAGATTTACCCCATTTCAATTAATTAATAAAAAAAAAACGTATGAGGGTCTCTACGTAGGATTTAATATCTTACTACCTACCTTTACAACCAAATGTAGTACGGTCAAGTTGTCTTGAGAGAATAGTTAAAGTGCACGCAAGTTGATTGACACTCGAACTATCTTTGTTTGAAGACTTAGACTACCTAAATCATAATACAATGGAAATTGTTAGTGGGTTCGGTTCGGATATCCCTACTTTCCCCGTGGAGACCCGATTTCCTAACGGGATAAAAACCTTCCACAAGGACGGAGAGTGTAATCCCCGCGGCCGTGTTACCATTACTAGATTTAAGAAAGTTGGTTTCATGCACAGTTCTTTTTATTTTTTCTTTTTTTTCCTCGAACTCATAGATTAATTTGATGTCGGACTTAACTGATCCATTTACCTCCCTTCCTTTTACCAATCTATGGCAGGCCAGAAATCTTCAAGAATGCAATCACTGGAGATCAAAACGAAAATCTGCAAGCAGAGAATAATCGACAGGAAGAGGACGAAATCGACTCGAGCGATGATGATGGCCTTCCCCCTCTAGAAGCCAACACGAACAGAGCTAAACCATTAATATTACAACCGGAAGAAGAAACAGAGTCTGATTCAGATTCTTAACTTGCATATTAATTTGAAGTCCATAATTTTGATTTAGTACTATGAATATTCATTTTGATCGTTTGTCCTTCAATTTTAATTTTGTAATTAACAGAAATTTGAACTAACTGCATTTTTTTCATCTGTTATAATATGTAATCTATGCAGTTTAGAATATCAAATACAAAAAATAGACTAATGAAAAATTT

mRNA sequence

GAGCATCCTTCGTAGACTTCTCGAAGAAATCCTCAATTTCTGCAGTACTTATGTTAGCTCTCCACGCCTTCTTCCCCTTCCTAGATCCCTTTGATTTCTTCCCCATCGCTCTGAAACTGAAGACTGAAGGTTGAAGCTTTGACAGCACAGGGAGAATAACAGGGGAGGGAAGAAAGAAGGGTGGAGCGAAAAGAGGGGGACGGGCAGGGTTTAGGTCTTTTTATTTTCCCCTTTTTTAAATATTTTTAATATGCATATTTTCTTATGATTAAAAAAAAAAAAAGAAAAAAAAGGAAGACATGGTGTATTAGCCCATCGGAGGAACCCTAAGTCTTCTCATCTCACTTCAGACCGCCCCACCGTTCGTTCACTACCGTTCTCATCTCACTCCACCGGCGCCCGGCGGCCCCCCACCTCCCACCTCTAATCTCTTCTCTTCCCTTGTTAGAAGAAGAACTCTAGTTGAACTGAGTCACGGACAGAGCATGAAGGGTGGAAGAAAGAACTTGCAGAGGGCATCAAATCAACATATCGTAGGCCTCGAAGATGGTCATAGCATTATGCAGGTTGTCTCAATTCGTGGTTCCAATCTAATCGAGGTAATGGATGCACAAGGTGAGAAATCACTGGCATTATTTCCTGCCAAGTTTCAAAAGAGCATGTGGATAAAACGAGGGAGTTTCGTTGTAGTTGATGAAAGTGGAAAGAAGAATGCTCTTGAATCTGGAAGCAAGGTGGCATGCATTGTTTCTCGAGTTCTATACTTTGAACAAGTTCGCGAGCTTCAAAAATCTCCAGAATGGCCAGAAATCTTCAAGAATGCAATCACTGGAGATCAAAACGAAAATCTGCAAGCAGAGAATAATCGACAGGAAGAGGACGAAATCGACTCGAGCGATGATGATGGCCTTCCCCCTCTAGAAGCCAACACGAACAGAGCTAAACCATTAATATTACAACCGGAAGAAGAAACAGAGTCTGATTCAGATTCTTAACTTGCATATTAATTTGAAGTCCATAATTTTGATTTAGTACTATGAATATTCATTTTGATCGTTTGTCCTTCAATTTTAATTTTGTAATTAACAGAAATTTGAACTAACTGCATTTTTTTCATCTGTTATAATATGTAATCTATGCAGTTTAGAATATCAAATACAAAAAATAGACTAATGAAAAATTT

Coding sequence (CDS)

ATGAAGGGTGGAAGAAAGAACTTGCAGAGGGCATCAAATCAACATATCGTAGGCCTCGAAGATGGTCATAGCATTATGCAGGTTGTCTCAATTCGTGGTTCCAATCTAATCGAGGTAATGGATGCACAAGGTGAGAAATCACTGGCATTATTTCCTGCCAAGTTTCAAAAGAGCATGTGGATAAAACGAGGGAGTTTCGTTGTAGTTGATGAAAGTGGAAAGAAGAATGCTCTTGAATCTGGAAGCAAGGTGGCATGCATTGTTTCTCGAGTTCTATACTTTGAACAAGTTCGCGAGCTTCAAAAATCTCCAGAATGGCCAGAAATCTTCAAGAATGCAATCACTGGAGATCAAAACGAAAATCTGCAAGCAGAGAATAATCGACAGGAAGAGGACGAAATCGACTCGAGCGATGATGATGGCCTTCCCCCTCTAGAAGCCAACACGAACAGAGCTAAACCATTAATATTACAACCGGAAGAAGAAACAGAGTCTGATTCAGATTCTTAA

Protein sequence

MKGGRKNLQRASNQHIVGLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMWIKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAITGDQNENLQAENNRQEEDEIDSSDDDGLPPLEANTNRAKPLILQPEEETESDSDS
Homology
[Close]
BLAST of Cp4.1LG01g11540 vs. Swiss-Prot
Match: EIF1A_DANRE (Probable RNA-binding protein EIF1AD OS=Danio rerio GN=eif1ad PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.5e-19
Identity = 61/166 (36.75%), Postives = 95/166 (57.23%), Query Frame = 1 

Query: 5   RKNLQRASNQHIVGLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMWIKRG 64
           RK++ +   +  V   +   IM+V+   G+NL E +   GE+ L   P KF+K++WIKRG
Sbjct: 7   RKHVVKEVLEDYVTPTEDQQIMRVLGSNGNNLHEAVTGSGERFLLSMPTKFRKNIWIKRG 66

Query: 65  SFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPEWPEIF-KNAITGDQNENLQ 124
            FV+VD       ++ G KV   +S +LY + ++ L+K   WPE F ++  +G++NE  Q
Sbjct: 67  DFVIVD------PIKEGGKVKGEISFILYRDHIQHLRKLGVWPEGFQEDRTSGERNEGTQ 126

Query: 125 AENNRQ-EEDEIDSSDDDGLPPLEANTNRAKPLILQPEEETESDSD 169
            E + + EE+E DS  +D    L  NTNRA  L  + EEET+ D +
Sbjct: 127 KERSEEKEEEEGDSESEDDDSDLFVNTNRATVLYSESEEETDEDEE 166

[Close]
BLAST of Cp4.1LG01g11540 vs. Swiss-Prot
Match: EIF1A_MACFA (Probable RNA-binding protein EIF1AD OS=Macaca fascicularis GN=EIF1AD PE=2 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.0e-15
Identity = 59/157 (37.58%), Postives = 84/157 (53.50%), Query Frame = 1 

Query: 14  QHIVGLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMWIKRGSFVVVDESG 73
           +HIV   D   I++V+   G+NL EV  AQG++ L   P+K++K++WIKRG F++VD   
Sbjct: 17  EHIVP-SDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVDP-- 76

Query: 74  KKNALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAITGDQNENLQAENNRQEEDE 133
               +E G KV   +S VL  + VR LQK   WPE F        N N Q +     E +
Sbjct: 77  ----IEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAFSEVAEKHNNRNRQTQPELPAEPQ 136

Query: 134 I----DSSDDDGLPPLEANTNRAKPLILQPEEETESD 167
           +     SS+DD    L  NTNR +    + EEE+E +
Sbjct: 137 LSGEESSSEDDS--DLFVNTNRRQ--YHESEEESEEE 162

[Close]
BLAST of Cp4.1LG01g11540 vs. Swiss-Prot
Match: EIF1A_HUMAN (Probable RNA-binding protein EIF1AD OS=Homo sapiens GN=EIF1AD PE=1 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.0e-15
Identity = 59/157 (37.58%), Postives = 84/157 (53.50%), Query Frame = 1 

Query: 14  QHIVGLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMWIKRGSFVVVDESG 73
           +HIV   D   I++V+   G+NL EV  AQG++ L   P+K++K++WIKRG F++VD   
Sbjct: 17  EHIVP-SDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVDP-- 76

Query: 74  KKNALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAITGDQNENLQAENNRQEEDE 133
               +E G KV   +S VL  + VR LQK   WPE F        N N Q +     E +
Sbjct: 77  ----IEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAFSEVAEKHNNRNRQTQPELPAEPQ 136

Query: 134 I----DSSDDDGLPPLEANTNRAKPLILQPEEETESD 167
           +     SS+DD    L  NTNR +    + EEE+E +
Sbjct: 137 LSGEESSSEDDS--DLFVNTNRRQ--YHESEEESEEE 162

[Close]
BLAST of Cp4.1LG01g11540 vs. Swiss-Prot
Match: EIF1A_MOUSE (Probable RNA-binding protein EIF1AD OS=Mus musculus GN=Eif1ad PE=1 SV=2)

HSP 1 Score: 82.4 bits (202), Expect = 5.2e-15
Identity = 58/165 (35.15%), Postives = 86/165 (52.12%), Query Frame = 1 

Query: 8   LQRASNQHIVGLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMWIKRGSFV 67
           +Q    +H+V   D   I++V+   G+NL EV  AQG++ L   P+K++K++WIKRG F+
Sbjct: 11  VQEVLGEHMVP-SDHQQIVKVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFL 70

Query: 68  VVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAITGDQNENLQAENN 127
           +VD       +E G KV   +S VL    VR LQK   WPE F        N N +++  
Sbjct: 71  IVD------PIEEGEKVKAEISFVLCKNHVRSLQKEGHWPEAFSEVAEKQNNMNRESQPE 130

Query: 128 RQEEDEI----DSSDDDGLPPLEANTNRAKPLILQPEEETESDSD 169
              E ++     SS+DD    L  NTN  +    + EEE+E D +
Sbjct: 131 LPAEPQLSGEGSSSEDDS--DLFVNTNHRQ--YHESEEESEEDEE 164

[Close]
BLAST of Cp4.1LG01g11540 vs. Swiss-Prot
Match: EIF1A_BOVIN (Probable RNA-binding protein EIF1AD OS=Bos taurus GN=EIF1AD PE=2 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 8.8e-15
Identity = 60/158 (37.97%), Postives = 85/158 (53.80%), Query Frame = 1 

Query: 14  QHIVGLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMWIKRGSFVVVDESG 73
           +H+V   D   I++V+   G+NL EV  AQG++ L   P+K++K++WIKRG F++VD   
Sbjct: 17  EHMVP-SDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVD--- 76

Query: 74  KKNALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAITGDQNE-NLQAE----NNR 133
               +E G KV   +S VL  + VR LQK   WPE F      D N+ N Q +       
Sbjct: 77  ---PIEEGEKVKAEISFVLCKDHVRSLQKDGHWPEAFSQVTEKDNNDRNRQTQPELPAEP 136

Query: 134 QEEDEIDSSDDDGLPPLEANTNRAKPLILQPEEETESD 167
           Q   E  SS+DD    L  NTNR +    + EEE+E +
Sbjct: 137 QSSGEESSSEDDS--DLFVNTNRRQ--YHESEEESEEE 163

[Close]
BLAST of Cp4.1LG01g11540 vs. TrEMBL
Match: A0A0A0KM30_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G218810 PE=4 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 1.0e-78
Identity = 153/169 (90.53%), Postives = 161/169 (95.27%), Query Frame = 1 

Query: 1   MKGGRKNLQRASNQHIVGLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           MKGGRKNLQRAS  HI  LEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLQRASEHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAITGDQNE 120
           IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQ+RELQKSPEWPEIFKNAI GD+NE
Sbjct: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE 120

Query: 121 NLQAENNRQEEDEIDSSDDDGLPPLEANTNRAKPLILQPEEETESDSDS 170
           NLQA+NN+  EDE++SSDDDGLPPLEANTNRAKPLILQP+ E+ESDSDS
Sbjct: 121 NLQAQNNQPGEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS 169

[Close]
BLAST of Cp4.1LG01g11540 vs. TrEMBL
Match: A0A067JCS2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03302 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 9.0e-59
Identity = 121/169 (71.60%), Postives = 143/169 (84.62%), Query Frame = 1 

Query: 1   MKGGRKNLQRASNQHIVGLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           MKGGRKNL+RA+ +H + LEDG SI QVVS+RGSN+IEVMDA+GEKSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLKRAAEEHNLTLEDGKSIAQVVSLRGSNVIEVMDARGEKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAITGDQNE 120
           IKRGSFVVVDESGK+ ALESGSKVACIVS+VL++EQVR L+KS EWPEIFK+  + D N 
Sbjct: 61  IKRGSFVVVDESGKQKALESGSKVACIVSQVLFYEQVRALRKSLEWPEIFKSTTSDDSNG 120

Query: 121 NLQAENNRQEEDEIDSSDDDGLPPLEANTNRAKPLILQPEEETESDSDS 170
           +L    ++QE+DE DSSDDDGLPPLEAN NR KP   Q + E++S SD+
Sbjct: 121 SLHKSTSQQEDDEFDSSDDDGLPPLEANMNRIKPPEFQSDAESKSGSDT 169

[Close]
BLAST of Cp4.1LG01g11540 vs. TrEMBL
Match: A0A151SG33_CAJCA (Putative RNA-binding protein EIF1AD OS=Cajanus cajan GN=KK1_024340 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 2.2e-57
Identity = 117/171 (68.42%), Postives = 142/171 (83.04%), Query Frame = 1 

Query: 1   MKGGRKNLQRASNQHIVGLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           M+GGRKNL+RA+ +  + L+DG SIMQV+S+RGSNLIEVMDA G KSLALFPAKFQ+SMW
Sbjct: 1   MRGGRKNLKRATEEKHITLQDGQSIMQVLSLRGSNLIEVMDASGNKSLALFPAKFQRSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAITGDQNE 120
           IKRGSFVVVDESGK+ ALESGSKVACIVS+VL++EQVRELQKSPEWPE FK+    D N 
Sbjct: 61  IKRGSFVVVDESGKEKALESGSKVACIVSQVLFYEQVRELQKSPEWPEKFKSETLDDSNS 120

Query: 121 N--LQAENNRQEEDEIDSSDDDGLPPLEANTNRAKPLILQPEEETESDSDS 170
           N    ++   + EDE++ SDDDGLPPLEANTNR +P  L+ +E++ES SD+
Sbjct: 121 NERTASQQENEREDEMEGSDDDGLPPLEANTNRMRPFELEADEDSESSSDT 171

[Close]
BLAST of Cp4.1LG01g11540 vs. TrEMBL
Match: V4TCA9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032334mg PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 6.5e-57
Identity = 116/170 (68.24%), Postives = 145/170 (85.29%), Query Frame = 1 

Query: 1   MKGGRKNLQRASNQHIVGLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           MKGGRKNL+RA+ +  + L+DG SIMQVVS+RGSNLIEV+DA+GEKSLALFPAKFQKSMW
Sbjct: 111 MKGGRKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKGEKSLALFPAKFQKSMW 170

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAITGDQNE 120
           IKRGSFVVVDESGK+ A++ GSKVACIV++VL++EQVR LQKS EWPEIFK+  + D N 
Sbjct: 171 IKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANG 230

Query: 121 NLQAEN-NRQEEDEIDSSDDDGLPPLEANTNRAKPLILQPEEETESDSDS 170
           +L+ +  N +E D+ +S DDDGLPPLEANTNR KP+ LQ + E++S+SD+
Sbjct: 231 SLERQACNHEENDQSESDDDDGLPPLEANTNRMKPMELQTQSESDSESDT 280

[Close]
BLAST of Cp4.1LG01g11540 vs. TrEMBL
Match: W9QLB9_9ROSA (Putative RNA-binding protein EIF1AD OS=Morus notabilis GN=L484_009914 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 8.5e-57
Identity = 115/169 (68.05%), Postives = 144/169 (85.21%), Query Frame = 1 

Query: 1   MKGGRKNLQRASNQHIVGLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           MKGGRKNL+RA+ +  + LE+GH+IMQV+S+RGSNLIEVMDAQG+KSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLKRATEEESLTLEEGHNIMQVLSLRGSNLIEVMDAQGKKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAITGDQNE 120
           IKRGSFVVVD+SGK+ A+ESGSKV CIVS+VL++EQ+R LQKSPEWPE+FK+ +  D N 
Sbjct: 61  IKRGSFVVVDDSGKEKAIESGSKVTCIVSKVLFYEQLRALQKSPEWPEVFKSTVLDDSNG 120

Query: 121 NLQAENNRQEEDEIDSSDDDGLPPLEANTNRAKPLILQPEEETESDSDS 170
           +++ E ++QE    +SSD+DGLPPLEANTNR +P  L  E ++ SDSDS
Sbjct: 121 SMERETSQQEG---ESSDNDGLPPLEANTNRIRPYELCAESDSGSDSDS 166

[Close]
BLAST of Cp4.1LG01g11540 vs. TAIR10
Match: AT2G40780.1 (AT2G40780.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 183.7 bits (465), Expect = 9.3e-47
Identity = 99/172 (57.56%), Postives = 133/172 (77.33%), Query Frame = 1 

Query: 1   MKGGRKNLQRASNQHIVGLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           M  GR+NL++A++     LE+  SI QVVS+RGSN IE+MDA+GE SLALFPAKF++SMW
Sbjct: 1   MNRGRRNLKQAASDQDFTLEECQSIAQVVSLRGSNQIEIMDAKGENSLALFPAKFRESMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNA--ITGDQ 120
           I+RGSFVV+D +GK+ A ESGSKV  IV +VL+FEQVR LQKSPEWPEIFK+   I  ++
Sbjct: 61  IRRGSFVVIDHTGKEKAQESGSKVTSIVCKVLFFEQVRLLQKSPEWPEIFKDTRPIPAEK 120

Query: 121 NENLQAENNRQEEDEIDSS-DDDGLPPLEANTNRAKPLILQPEEETESDSDS 170
           +  ++     +++ E+DSS DDDG+PPL+ANTNR +P  ++ + ET+S SDS
Sbjct: 121 SSPIE---QHEDDGEVDSSDDDDGMPPLQANTNRLRPFGVKCDAETDSGSDS 169

[Close]
BLAST of Cp4.1LG01g11540 vs. NCBI nr
Match: gi|449457427|ref|XP_004146450.1| (PREDICTED: probable RNA-binding protein EIF1AD [Cucumis sativus])

HSP 1 Score: 300.8 bits (769), Expect = 1.5e-78
Identity = 153/169 (90.53%), Postives = 161/169 (95.27%), Query Frame = 1 

Query: 1   MKGGRKNLQRASNQHIVGLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           MKGGRKNLQRAS  HI  LEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLQRASEHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAITGDQNE 120
           IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQ+RELQKSPEWPEIFKNAI GD+NE
Sbjct: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE 120

Query: 121 NLQAENNRQEEDEIDSSDDDGLPPLEANTNRAKPLILQPEEETESDSDS 170
           NLQA+NN+  EDE++SSDDDGLPPLEANTNRAKPLILQP+ E+ESDSDS
Sbjct: 121 NLQAQNNQPGEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS 169

[Close]
BLAST of Cp4.1LG01g11540 vs. NCBI nr
Match: gi|659114116|ref|XP_008456911.1| (PREDICTED: probable RNA-binding protein EIF1AD [Cucumis melo])

HSP 1 Score: 294.3 bits (752), Expect = 1.4e-76
Identity = 151/169 (89.35%), Postives = 159/169 (94.08%), Query Frame = 1 

Query: 1   MKGGRKNLQRASNQHIVGLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           MKGGRKNLQRAS  HI  LEDGHSIM VVSIRGSNLIEVMDAQG KSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLQRASEHHIASLEDGHSIMLVVSIRGSNLIEVMDAQGGKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAITGDQNE 120
           IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSP WPEIFKNAI GD+NE
Sbjct: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPGWPEIFKNAIVGDRNE 120

Query: 121 NLQAENNRQEEDEIDSSDDDGLPPLEANTNRAKPLILQPEEETESDSDS 170
           NL+A+NN+ EEDE++SSDDDGLPPLEANTNRAKPLILQP+ E+ESDSDS
Sbjct: 121 NLRAQNNQSEEDEVNSSDDDGLPPLEANTNRAKPLILQPDGESESDSDS 169

[Close]
BLAST of Cp4.1LG01g11540 vs. NCBI nr
Match: gi|645256904|ref|XP_008234164.1| (PREDICTED: probable RNA-binding protein EIF1AD [Prunus mume])

HSP 1 Score: 235.3 bits (599), Expect = 7.6e-59
Identity = 118/169 (69.82%), Postives = 145/169 (85.80%), Query Frame = 1 

Query: 1   MKGGRKNLQRASNQHIVGLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           MKGGRKNL+RA  +  + L+DGHSIMQV+S+RGSNLIE+MD QGEKSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLKRAVEEDSLTLKDGHSIMQVLSLRGSNLIEIMDGQGEKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAITGDQNE 120
           IKRGSFVVVD SGK+  LESGSKV CIVS+VL++EQVR L+KSPEWPEIFK+ ++   + 
Sbjct: 61  IKRGSFVVVDASGKEKVLESGSKVGCIVSQVLFYEQVRVLKKSPEWPEIFKSTVSDGCHA 120

Query: 121 NLQAENNRQEEDEIDSSDDDGLPPLEANTNRAKPLILQPEEETESDSDS 170
           +LQ + ++QEE+E+DSSDDDGLPPLEANTNR KP+  + + E+ SDSD+
Sbjct: 121 SLQGDTSQQEENELDSSDDDGLPPLEANTNRMKPVDWKSDTESNSDSDT 169

[Close]
BLAST of Cp4.1LG01g11540 vs. NCBI nr
Match: gi|802778340|ref|XP_012091122.1| (PREDICTED: probable RNA-binding protein EIF1AD [Jatropha curcas])

HSP 1 Score: 234.6 bits (597), Expect = 1.3e-58
Identity = 121/169 (71.60%), Postives = 143/169 (84.62%), Query Frame = 1 

Query: 1   MKGGRKNLQRASNQHIVGLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           MKGGRKNL+RA+ +H + LEDG SI QVVS+RGSN+IEVMDA+GEKSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLKRAAEEHNLTLEDGKSIAQVVSLRGSNVIEVMDARGEKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAITGDQNE 120
           IKRGSFVVVDESGK+ ALESGSKVACIVS+VL++EQVR L+KS EWPEIFK+  + D N 
Sbjct: 61  IKRGSFVVVDESGKQKALESGSKVACIVSQVLFYEQVRALRKSLEWPEIFKSTTSDDSNG 120

Query: 121 NLQAENNRQEEDEIDSSDDDGLPPLEANTNRAKPLILQPEEETESDSDS 170
           +L    ++QE+DE DSSDDDGLPPLEAN NR KP   Q + E++S SD+
Sbjct: 121 SLHKSTSQQEDDEFDSSDDDGLPPLEANMNRIKPPEFQSDAESKSGSDT 169

[Close]
BLAST of Cp4.1LG01g11540 vs. NCBI nr
Match: gi|1012342573|gb|KYP53766.1| (putative RNA-binding protein EIF1AD [Cajanus cajan])

HSP 1 Score: 229.9 bits (585), Expect = 3.2e-57
Identity = 117/171 (68.42%), Postives = 142/171 (83.04%), Query Frame = 1 

Query: 1   MKGGRKNLQRASNQHIVGLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           M+GGRKNL+RA+ +  + L+DG SIMQV+S+RGSNLIEVMDA G KSLALFPAKFQ+SMW
Sbjct: 1   MRGGRKNLKRATEEKHITLQDGQSIMQVLSLRGSNLIEVMDASGNKSLALFPAKFQRSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAITGDQNE 120
           IKRGSFVVVDESGK+ ALESGSKVACIVS+VL++EQVRELQKSPEWPE FK+    D N 
Sbjct: 61  IKRGSFVVVDESGKEKALESGSKVACIVSQVLFYEQVRELQKSPEWPEKFKSETLDDSNS 120

Query: 121 N--LQAENNRQEEDEIDSSDDDGLPPLEANTNRAKPLILQPEEETESDSDS 170
           N    ++   + EDE++ SDDDGLPPLEANTNR +P  L+ +E++ES SD+
Sbjct: 121 NERTASQQENEREDEMEGSDDDGLPPLEANTNRMRPFELEADEDSESSSDT 171

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g11540 vs. Swiss-Prot
Match NameE-valueIdentityDescription
EIF1A_DANRE1.5e-1936.75Probable RNA-binding protein EIF1AD OS=Danio rerio GN=eif1ad PE=2 SV=1[more]
EIF1A_MACFA3.0e-1537.58Probable RNA-binding protein EIF1AD OS=Macaca fascicularis GN=EIF1AD PE=2 SV=1[more]
EIF1A_HUMAN3.0e-1537.58Probable RNA-binding protein EIF1AD OS=Homo sapiens GN=EIF1AD PE=1 SV=1[more]
EIF1A_MOUSE5.2e-1535.15Probable RNA-binding protein EIF1AD OS=Mus musculus GN=Eif1ad PE=1 SV=2[more]
EIF1A_BOVIN8.8e-1537.97Probable RNA-binding protein EIF1AD OS=Bos taurus GN=EIF1AD PE=2 SV=1[more]
BLAST of Cp4.1LG01g11540 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KM30_CUCSA1.0e-7890.53Uncharacterized protein OS=Cucumis sativus GN=Csa_5G218810 PE=4 SV=1[more]
A0A067JCS2_JATCU9.0e-5971.60Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03302 PE=4 SV=1[more]
A0A151SG33_CAJCA2.2e-5768.42Putative RNA-binding protein EIF1AD OS=Cajanus cajan GN=KK1_024340 PE=4 SV=1[more]
V4TCA9_9ROSI6.5e-5768.24Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032334mg PE=4 SV=1[more]
W9QLB9_9ROSA8.5e-5768.05Putative RNA-binding protein EIF1AD OS=Morus notabilis GN=L484_009914 PE=4 SV=1[more]
BLAST of Cp4.1LG01g11540 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G40780.19.3e-4757.56 Nucleic acid-binding, OB-fold-like protein[more]
BLAST of Cp4.1LG01g11540 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449457427|ref|XP_004146450.1|1.5e-7890.53PREDICTED: probable RNA-binding protein EIF1AD [Cucumis sativus][more]
gi|659114116|ref|XP_008456911.1|1.4e-7689.35PREDICTED: probable RNA-binding protein EIF1AD [Cucumis melo][more]
gi|645256904|ref|XP_008234164.1|7.6e-5969.82PREDICTED: probable RNA-binding protein EIF1AD [Prunus mume][more]
gi|802778340|ref|XP_012091122.1|1.3e-5871.60PREDICTED: probable RNA-binding protein EIF1AD [Jatropha curcas][more]
gi|1012342573|gb|KYP53766.1|3.2e-5768.42putative RNA-binding protein EIF1AD [Cajanus cajan][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003743translation initiation factor activity
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR006196RNA-binding_domain_S1_IF1
IPR001253TIF_eIF-1A
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006626 protein targeting to mitochondrion
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0006413 translational initiation
cellular_component GO:0005840 ribosome
cellular_component GO:0005575 cellular_component
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g11540.1Cp4.1LG01g11540.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001253Translation initiation factor 1A (eIF-1A)SMARTSM00652eIF1neu4coord: 18..107
score: 5.5
IPR006196RNA-binding domain, S1, IF1 typePFAMPF01176eIF-1acoord: 23..72
score: 1.1
IPR006196RNA-binding domain, S1, IF1 typePROFILEPS50832S1_IF1_TYPEcoord: 12..92
score: 9
IPR012340Nucleic acid-binding, OB-foldGENE3DG3DSA:2.40.50.140coord: 5..140
score: 5.0
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 11..140
score: 2.68
NoneNo IPR availableunknownCoilCoilcoord: 112..132
scor
NoneNo IPR availablePANTHERPTHR21641TRANSLATION INITIATION FACTOR-RELATEDcoord: 1..169
score: 1.1
NoneNo IPR availablePANTHERPTHR21641:SF0RNA-BINDING PROTEIN EIF1AD-RELATEDcoord: 1..169
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g11540Cucsa.144150Cucumber (Gy14) v1cgycpeB0387
Cp4.1LG01g11540CmaCh04G010800Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g11540CmoCh04G011450Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g11540Cla007268Watermelon (97103) v1cpewmB417
Cp4.1LG01g11540Csa5G218810Cucumber (Chinese Long) v2cpecuB437
Cp4.1LG01g11540MELO3C020110Melon (DHL92) v3.5.1cpemeB365
Cp4.1LG01g11540ClCG07G004830Watermelon (Charleston Gray)cpewcgB409
Cp4.1LG01g11540CSPI05G11320Wild cucumber (PI 183967)cpecpiB437
Cp4.1LG01g11540Lsi04G010410Bottle gourd (USVL1VR-Ls)cpelsiB354
Cp4.1LG01g11540MELO3C020110.2Melon (DHL92) v3.6.1cpemedB441
Cp4.1LG01g11540CsaV3_5G010740Cucumber (Chinese Long) v3cpecucB0541
Cp4.1LG01g11540Bhi07G000437Wax gourdcpewgoB0553
Cp4.1LG01g11540CsGy5G008590Cucumber (Gy14) v2cgybcpeB646
Cp4.1LG01g11540Carg00182Silver-seed gourdcarcpeB0938
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g11540Cucurbita pepo (Zucchini)cpecpeB202
Cp4.1LG01g11540Cucurbita pepo (Zucchini)cpecpeB374
Cp4.1LG01g11540Cucurbita pepo (Zucchini)cpecpeB376
Cp4.1LG01g11540Cucurbita maxima (Rimu)cmacpeB320
Cp4.1LG01g11540Cucurbita maxima (Rimu)cmacpeB722
Cp4.1LG01g11540Cucurbita moschata (Rifu)cmocpeB282
Cp4.1LG01g11540Cucurbita moschata (Rifu)cmocpeB674
Cp4.1LG01g11540Wild cucumber (PI 183967)cpecpiB466
Cp4.1LG01g11540Cucumber (Chinese Long) v2cpecuB465
Cp4.1LG01g11540Bottle gourd (USVL1VR-Ls)cpelsiB341
Cp4.1LG01g11540Watermelon (Charleston Gray)cpewcgB358
Cp4.1LG01g11540Watermelon (97103) v1cpewmB464
Cp4.1LG01g11540Cucumber (Gy14) v2cgybcpeB803
Cp4.1LG01g11540Silver-seed gourdcarcpeB1259
Cp4.1LG01g11540Cucumber (Chinese Long) v3cpecucB0574
Cp4.1LG01g11540Wax gourdcpewgoB0528