Cla007268 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla007268
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr7 : 5925060 .. 5925212 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGGTGGAAGAAAGAACTTGCAGAGAGCATCAGAGCAACATATCGCAAGCCTCGAAGATGGTCATAGTATTATGCAGGTTGTCTCAATTCGTGGTTCCAATCTAATCGAGGTAACTTTCTATTTCATCGATTATGCTCGTTCTCTCTGA

mRNA sequence

ATGAAAGGTGGAAGAAAGAACTTGCAGAGAGCATCAGAGCAACATATCGCAAGCCTCGAAGATGGTCATAGTATTATGCAGGTTGTCTCAATTCGTGGTTCCAATCTAATCGAGGTAACTTTCTATTTCATCGATTATGCTCGTTCTCTCTGA

Coding sequence (CDS)

ATGAAAGGTGGAAGAAAGAACTTGCAGAGAGCATCAGAGCAACATATCGCAAGCCTCGAAGATGGTCATAGTATTATGCAGGTTGTCTCAATTCGTGGTTCCAATCTAATCGAGGTAACTTTCTATTTCATCGATTATGCTCGTTCTCTCTGA

Protein sequence

MKGGRKNLQRASEQHIASLEDGHSIMQVVSIRGSNLIEVTFYFIDYARSL

Homology

[Close]

BLAST of Cla007268 vs. TrEMBL
Match: A0A0A0KM30_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G218810 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.2e-11
Identity = 38/39 (97.44%), Postives = 38/39 (97.44%), Query Frame = 1


Query: 1  MKGGRKNLQRASEQHIASLEDGHSIMQVVSIRGSNLIEV 40
          MKGGRKNLQRASE HIASLEDGHSIMQVVSIRGSNLIEV
Sbjct: 1  MKGGRKNLQRASEHHIASLEDGHSIMQVVSIRGSNLIEV 39

[Close]

BLAST of Cla007268 vs. TrEMBL
Match: W9QLB9_9ROSA (Putative RNA-binding protein EIF1AD OS=Morus notabilis GN=L484_009914 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 4.0e-07
Identity = 28/39 (71.79%), Postives = 36/39 (92.31%), Query Frame = 1


Query: 1  MKGGRKNLQRASEQHIASLEDGHSIMQVVSIRGSNLIEV 40
          MKGGRKNL+RA+E+   +LE+GH+IMQV+S+RGSNLIEV
Sbjct: 1  MKGGRKNLKRATEEESLTLEEGHNIMQVLSLRGSNLIEV 39

[Close]

BLAST of Cla007268 vs. TrEMBL
Match: A0A067JCS2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03302 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 5.3e-07
Identity = 29/39 (74.36%), Postives = 35/39 (89.74%), Query Frame = 1


Query: 1  MKGGRKNLQRASEQHIASLEDGHSIMQVVSIRGSNLIEV 40
          MKGGRKNL+RA+E+H  +LEDG SI QVVS+RGSN+IEV
Sbjct: 1  MKGGRKNLKRAAEEHNLTLEDGKSIAQVVSLRGSNVIEV 39

[Close]

BLAST of Cla007268 vs. TrEMBL
Match: A0A067FN38_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030718mg PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 5.3e-07
Identity = 29/39 (74.36%), Postives = 35/39 (89.74%), Query Frame = 1


Query: 1  MKGGRKNLQRASEQHIASLEDGHSIMQVVSIRGSNLIEV 40
          MKGGRKNL+RA+E+   +L+DG SIMQVVS+RGSNLIEV
Sbjct: 1  MKGGRKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEV 39

[Close]

BLAST of Cla007268 vs. TrEMBL
Match: M5XKZ2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012453mg PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 5.3e-07
Identity = 28/39 (71.79%), Postives = 35/39 (89.74%), Query Frame = 1


Query: 1  MKGGRKNLQRASEQHIASLEDGHSIMQVVSIRGSNLIEV 40
          MKGGRKNL+RA E+   +L+DGHSIMQV+S+RGSNLIE+
Sbjct: 1  MKGGRKNLKRAVEEESLTLKDGHSIMQVLSLRGSNLIEI 39

[Close]

BLAST of Cla007268 vs. NCBI nr
Match: gi|449457427|ref|XP_004146450.1| (PREDICTED: probable RNA-binding protein EIF1AD [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 1.7e-11
Identity = 38/39 (97.44%), Postives = 38/39 (97.44%), Query Frame = 1


Query: 1  MKGGRKNLQRASEQHIASLEDGHSIMQVVSIRGSNLIEV 40
          MKGGRKNLQRASE HIASLEDGHSIMQVVSIRGSNLIEV
Sbjct: 1  MKGGRKNLQRASEHHIASLEDGHSIMQVVSIRGSNLIEV 39

[Close]

BLAST of Cla007268 vs. NCBI nr
Match: gi|659114116|ref|XP_008456911.1| (PREDICTED: probable RNA-binding protein EIF1AD [Cucumis melo])

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-10
Identity = 37/39 (94.87%), Postives = 37/39 (94.87%), Query Frame = 1


Query: 1  MKGGRKNLQRASEQHIASLEDGHSIMQVVSIRGSNLIEV 40
          MKGGRKNLQRASE HIASLEDGHSIM VVSIRGSNLIEV
Sbjct: 1  MKGGRKNLQRASEHHIASLEDGHSIMLVVSIRGSNLIEV 39

[Close]

BLAST of Cla007268 vs. NCBI nr
Match: gi|694369652|ref|XP_009362776.1| (PREDICTED: probable RNA-binding protein EIF1AD [Pyrus x bretschneideri])

HSP 1 Score: 63.2 bits (152), Expect = 1.5e-07
Identity = 30/39 (76.92%), Postives = 35/39 (89.74%), Query Frame = 1


Query: 1  MKGGRKNLQRASEQHIASLEDGHSIMQVVSIRGSNLIEV 40
          MKGGRKNL+RA EQ   +LEDGHS+MQV+S+RGSNLIEV
Sbjct: 1  MKGGRKNLKRAVEQQSFTLEDGHSVMQVLSLRGSNLIEV 39

[Close]

BLAST of Cla007268 vs. NCBI nr
Match: gi|658048276|ref|XP_008359826.1| (PREDICTED: probable RNA-binding protein EIF1AD [Malus domestica])

HSP 1 Score: 63.2 bits (152), Expect = 1.5e-07
Identity = 30/39 (76.92%), Postives = 35/39 (89.74%), Query Frame = 1


Query: 1  MKGGRKNLQRASEQHIASLEDGHSIMQVVSIRGSNLIEV 40
          MKGGRKNL+RA EQ   +LEDGHS+MQV+S+RGSNLIEV
Sbjct: 1  MKGGRKNLKRAVEQQSFTLEDGHSVMQVLSLRGSNLIEV 39

[Close]

BLAST of Cla007268 vs. NCBI nr
Match: gi|658061847|ref|XP_008366807.1| (PREDICTED: probable RNA-binding protein EIF1AD [Malus domestica])

HSP 1 Score: 63.2 bits (152), Expect = 1.5e-07
Identity = 30/39 (76.92%), Postives = 35/39 (89.74%), Query Frame = 1


Query: 1  MKGGRKNLQRASEQHIASLEDGHSIMQVVSIRGSNLIEV 40
          MKGGRKNL+RA EQ   +LEDGHS+MQV+S+RGSNLIEV
Sbjct: 1  MKGGRKNLKRAVEQQSFTLEDGHSVMQVLSLRGSNLIEV 39

The following BLAST results are available for this feature:

BLAST of Cla007268 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KM30_CUCSA	1.2e-11	97.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G218810 PE=4 SV=1	[more]
W9QLB9_9ROSA	4.0e-07	71.79	Putative RNA-binding protein EIF1AD OS=Morus notabilis GN=L484_009914 PE=4 SV=1	[more]
A0A067JCS2_JATCU	5.3e-07	74.36	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03302 PE=4 SV=1	[more]
A0A067FN38_CITSI	5.3e-07	74.36	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030718mg PE=4 SV=1	[more]
M5XKZ2_PRUPE	5.3e-07	71.79	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012453mg PE=4 SV=1	[more]

BLAST of Cla007268 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449457427\|ref\|XP_004146450.1\|	1.7e-11	97.44	PREDICTED: probable RNA-binding protein EIF1AD [Cucumis sativus]	[more]
gi\|659114116\|ref\|XP_008456911.1\|	1.1e-10	94.87	PREDICTED: probable RNA-binding protein EIF1AD [Cucumis melo]	[more]
gi\|694369652\|ref\|XP_009362776.1\|	1.5e-07	76.92	PREDICTED: probable RNA-binding protein EIF1AD [Pyrus x bretschneideri]	[more]
gi\|658048276\|ref\|XP_008359826.1\|	1.5e-07	76.92	PREDICTED: probable RNA-binding protein EIF1AD [Malus domestica]	[more]
gi\|658061847\|ref\|XP_008366807.1\|	1.5e-07	76.92	PREDICTED: probable RNA-binding protein EIF1AD [Malus domestica]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006626	protein targeting to mitochondrion
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0003723	RNA binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU36641	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU59324	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla007268	Cla007268.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU59324	WMU59324	transcribed_cluster
WMU36641	WMU36641	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla007268	Cla97C07G133250	Watermelon (97103) v2	wmwmbB167
Cla007268	Csa5G218810	Cucumber (Chinese Long) v2	cuwmB387
Cla007268	MELO3C020110	Melon (DHL92) v3.5.1	mewmB056
Cla007268	ClCG07G004830	Watermelon (Charleston Gray)	wcgwmB365
Cla007268	CSPI05G11320	Wild cucumber (PI 183967)	cpiwmB395
Cla007268	Cucsa.144150	Cucumber (Gy14) v1	cgywmB253
Cla007268	CmaCh04G010800	Cucurbita maxima (Rimu)	cmawmB690
Cla007268	CmoCh04G011450	Cucurbita moschata (Rifu)	cmowmB684
Cla007268	Cp4.1LG01g11540	Cucurbita pepo (Zucchini)	cpewmB417
Cla007268	CsGy5G008590	Cucumber (Gy14) v2	cgybwmB359
Cla007268	MELO3C020110.2	Melon (DHL92) v3.6.1	medwmB053
Cla007268	Carg00182	Silver-seed gourd	carwmB0667
Cla007268	CsaV3_5G010740	Cucumber (Chinese Long) v3	cucwmB410
Cla007268	Bhi07G000437	Wax gourd	wgowmB548

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla007268	Cucumber (Gy14) v2	cgybwmB455
Cla007268	Silver-seed gourd	carwmB0254
Cla007268	Silver-seed gourd	carwmB0910
Cla007268	Cucumber (Chinese Long) v3	cucwmB511
Cla007268	Watermelon (97103) v2	wmwmbB152
Cla007268	Wax gourd	wgowmB328
Cla007268	Cucurbita maxima (Rimu)	cmawmB691
Cla007268	Cucurbita moschata (Rifu)	cmowmB255
Cla007268	Cucurbita moschata (Rifu)	cmowmB685
Cla007268	Watermelon (Charleston Gray)	wcgwmB094
Cla007268	Cucumber (Chinese Long) v2	cuwmB488
Cla007268	Cucurbita pepo (Zucchini)	cpewmB177
Cla007268	Cucurbita pepo (Zucchini)	cpewmB418
Cla007268	Bottle gourd (USVL1VR-Ls)	lsiwmB253
Cla007268	Bottle gourd (USVL1VR-Ls)	lsiwmB306