CSPI05G11320 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI05G11320
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	OB-fold nucleic acid binding domain-containing protein
Location	Chr5 : 9904335 .. 9907292 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTATTTCAATGAGAACTTCTAGAACCCCAACTAATCTTAATAGAAGCCTTTGGATAAACCCTAACTCTCTCATCTCACTTCAGTTGCCGCACCACCGTAGGTCGCCACTGGCTGGAGGCTCCGGCGCTCTAATCTCATCTCGTCACTTCTTAGAATTACGGTTCTCTTTCAAAGTATGAAAGGTGGGAGAAAGAACTTACAGCGGGCATCGGAGCATCATATCTCAAGCCTCGAAGATGGTCATAGTATTATGCAGGTTGTCTCAATTCGTGGTTCCAATCTAATTGAGGTATCCTTCTATTTCATCGATCATGCTCGCTCTCTCTAATTTTGTCAACTATTTACTCCACAATCTTGTGCTTTTCCTATTGCCTATTGTGTTAATTGCGTTAATCAACCTGAATGAACAACTCCTTTAATTGCAGTTAATCATCCACTAATGTTTTGTTTTCGAAAGTAAAAATAGTAGGTTTCAATTATTGCATGTTTGATTGTGTGGTTACATTGTGTATTTGAGATATTTGCTAACGATTTAAATAAATGATTCTGATATGCTTGTTGTATTGCAATTTCTTTGTACAAGTCATCCTTTTAGTTAAGCGTTCATATGGGGGAAACCATAACCTCTGCAGTTTCTCTATTTCGGGTGCAATAATTTGTTTGTTTCTTTATTTTTTAGGAAACCAAGATATGTATTATTTGTCAATTATATTCAGTGGGCTGCTTTGCTTTATTTTGTATTTTGGACAATCTTTAATACCATTTGTTTTTCTTCATCCTCTCTAGGTAATGGATGCACAAGGTGAGAAATCACTGGCATTATTTCCTGCCAAGTTTCAAAAGAGTATGTGGATAAAACGAGGTATGTTCTACTAACCATTCTACTCAACTCATTATTCCTGTTGCATTACATTGCCTTCCGAAGTAAGCAAGGTTCATTAATTCTCACTAAAAAAGCTGTTTCTTATTAAAAAGAAAAATCTGCAAAATCAAGAGATCTTCTACCATAAAAAATAAATGATAGAAGAAAAACATAAGATCCCATTTTGCATTTGCCTCGCTCTTTATGTCAAGGTTTTACGTGGTATGAGCGTCTGGAAACTATGCTATTTCATTTTCAGTGTTGTAGGAATTTATAAACTGTGGCCGTTGACTGTTAGATATGGTGTTTTTTCCCCTTTTCAGTTAGTAGGGTTTAGGGTTGAAAACAAACAAAGAACTTCACAAAACAGCAGCCAATATTTAAATCTTTAGGATTTTAGAATTCTATTCAATCTTATCTATCTTTTAGTTTCTGTACAAGTCTCATTTCTACTCATCTATGTTTTGCTTGTGTAAATAAACCATGTATAATATATATACATATATTTTTATATATAGTGCGTCTCACAAAAAAAATCTTGTGCCTTCTTGTGCACCTTGCGCCTAGGCTCCAGAGTTTCATTGTGTCTTTGTGCGTCTCGGGCATCTCCAATGAAACATGAAATCTAATAGGTCTTTGACCCATATAAATTAATTTTTCAGTTTTTGAAAATATTTTAGGAATCTGTTAGACACAAAGTTAAAAGTTGACTTGGTAGATACTTTATAAACATTTTAGAGATTTTTAAAGTTCCTTGACATTTTTGGTATAGACTTGAAAGCCTAAGGACTAAACTTATAATTTAACCCAACTATAATTATTCCCCAATTAAAATCACTACTCTAACATAACTTCAGATCCTGCTTTTATTGATTGCTTTTGAAGTGTCTGCTTTGCCATCGTTGTAGGGAGTTTCGTTGTAGTTGATGAAAGTGGAAAGAAGAATGCTCTTGAATCTGGAAGCAAGGTGGCATGCATTGTTTCTCGAGTTCTATATTTTGAACAAATTCGTGAGCTTCAAAAATCCCCAGAATGGTATGTTTTATTATATCAAATTTCAACCTATTCATGTTTAAATGGATTAGGCATTGCTTGATAAATTTTTGAATTCCATTAATCGATCAAACAAATATGAGGGTCTTGCTTATGATCGAGCAGATGTCCCTTCACAAATATTTAGAAGCAAGAATTAACTTTGTTCTTAACTGTGTGAAAAAGGTGAAGCAGATGGTAAATTTATTTATATGGTTGAAATTAGATAAAGATAACAATCAAATAGATGTGCCACGCTATTATTTCTATCACGTTCTTGCATGACAAAAATATCACTGCTAGTAGTTTATGTCGTGCCCTTGTGTCATTGCTTTTTTCCTCTACTGTGCGTGCAGGCTGAAATTGGAAATAAACCTACCACTTTAAACCACCTAGGCTGGACTAATGGTCAATATTAATCATACAAGTAATGAAATTAGAGAAAATAGGTTCAATTCATAACCGTCACCTACTTAAAATGTAATATCTTATGAACTATCTTGTCAATAGAAAAATGAACTAGAGTTGGATTGTTTTATGAAAATAGCTAAAAGTGTATACAAGTTGATTTGGACACACTCGGATATCCATAAGAAAAACACCAATTAAATTGAGTTGGACATATTTGTTTGAAAATTTCTTACCCCAGCCCAGCTTGTTTTTCTTAAACTGGTGGGTTAATATTCCACACCTTTTTGTACCAATGAATTGCAGGCCAGAAATCTTCAAGAATGCAATTGTTGGAGATCGAAACGAAAATCTTCAAGCACAAAATAATCAACCAGTGGAGGATGAGGTCAATTCAAGTGATGATGATGGCCTTCCCCCTCTAGAAGCCAACACGAACAGAGCTAAACCGTTAATATTACAACCGGATGCAGAATCAGAGTCTGATTCAGATTCTTAACTTGTATATTAATTTTAGCTCTACACTTTTTTATTTAATTACCATGAGCATTCATTTTGATTGTTTGTACTACAATTAAAAATTTTAATTTTGTAATTAACAGAAATTTCTGAGTACCTATTTTTGAATCTGATGGAATAAGAAATCTATGCAGC

mRNA sequence

ATGAAAGGTGGGAGAAAGAACTTACAGCGGGCATCGGAGCATCATATCTCAAGCCTCGAAGATGGTCATAGTATTATGCAGGTTGTCTCAATTCGTGGTTCCAATCTAATTGAGGTAATGGATGCACAAGGTGAGAAATCACTGGCATTATTTCCTGCCAAGTTTCAAAAGAGTATGTGGATAAAACGAGGGAGTTTCGTTGTAGTTGATGAAAGTGGAAAGAAGAATGCTCTTGAATCTGGAAGCAAGGTGGCATGCATTGTTTCTCGAGTTCTATATTTTGAACAAATTCGTGAGCTTCAAAAATCCCCAGAATGGCCAGAAATCTTCAAGAATGCAATTGTTGGAGATCGAAACGAAAATCTTCAAGCACAAAATAATCAACCAGTGGAGGATGAGGTCAATTCAAGTGATGATGATGGCCTTCCCCCTCTAGAAGCCAACACGAACAGAGCTAAACCGTTAATATTACAACCGGATGCAGAATCAGAGTCTGATTCAGATTCTTAA

Coding sequence (CDS)

ATGAAAGGTGGGAGAAAGAACTTACAGCGGGCATCGGAGCATCATATCTCAAGCCTCGAAGATGGTCATAGTATTATGCAGGTTGTCTCAATTCGTGGTTCCAATCTAATTGAGGTAATGGATGCACAAGGTGAGAAATCACTGGCATTATTTCCTGCCAAGTTTCAAAAGAGTATGTGGATAAAACGAGGGAGTTTCGTTGTAGTTGATGAAAGTGGAAAGAAGAATGCTCTTGAATCTGGAAGCAAGGTGGCATGCATTGTTTCTCGAGTTCTATATTTTGAACAAATTCGTGAGCTTCAAAAATCCCCAGAATGGCCAGAAATCTTCAAGAATGCAATTGTTGGAGATCGAAACGAAAATCTTCAAGCACAAAATAATCAACCAGTGGAGGATGAGGTCAATTCAAGTGATGATGATGGCCTTCCCCCTCTAGAAGCCAACACGAACAGAGCTAAACCGTTAATATTACAACCGGATGCAGAATCAGAGTCTGATTCAGATTCTTAA

Homology

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BLAST of CSPI05G11320 vs. Swiss-Prot
Match: EIF1A_DANRE (Probable RNA-binding protein EIF1AD OS=Danio rerio GN=eif1ad PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.8e-18
Identity = 59/158 (37.34%), Postives = 91/158 (57.59%), Query Frame = 1


Query: 13  EHHISSLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMWIKRGSFVVVDES 72
           E +++  ED   IM+V+   G+NL E +   GE+ L   P KF+K++WIKRG FV+VD  
Sbjct: 16  EDYVTPTED-QQIMRVLGSNGNNLHEAVTGSGERFLLSMPTKFRKNIWIKRGDFVIVD-- 75

Query: 73  GKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIF-KNAIVGDRNENLQAQNNQPVE 132
                ++ G KV   +S +LY + I+ L+K   WPE F ++   G+RNE  Q + ++  E
Sbjct: 76  ----PIKEGGKVKGEISFILYRDHIQHLRKLGVWPEGFQEDRTSGERNEGTQKERSEEKE 135

Query: 133 DEVNSSD-DDGLPPLEANTNRAKPLILQPDAESESDSD 169
           +E   S+ +D    L  NTNRA   +L  ++E E+D D
Sbjct: 136 EEEGDSESEDDDSDLFVNTNRA--TVLYSESEEETDED 164

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BLAST of CSPI05G11320 vs. Swiss-Prot
Match: EIF1A_BOVIN (Probable RNA-binding protein EIF1AD OS=Bos taurus GN=EIF1AD PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.1e-16
Identity = 61/161 (37.89%), Postives = 87/161 (54.04%), Query Frame = 1


Query: 13  EHHISSLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMWIKRGSFVVVDES 72
           EH + S  D   I++V+   G+NL EV  AQG++ L   P+K++K++WIKRG F++VD  
Sbjct: 17  EHMVPS--DQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVD-- 76

Query: 73  GKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE-NLQAQNNQPVE 132
                +E G KV   +S VL  + +R LQK   WPE F      D N+ N Q Q   P E
Sbjct: 77  ----PIEEGEKVKAEISFVLCKDHVRSLQKDGHWPEAFSQVTEKDNNDRNRQTQPELPAE 136

Query: 133 ----DEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSD 169
                E +SS+DD    L  NTNR +      ++E ES+ +
Sbjct: 137 PQSSGEESSSEDDS--DLFVNTNRRQ----YHESEEESEEE 163

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BLAST of CSPI05G11320 vs. Swiss-Prot
Match: EIF1A_MACFA (Probable RNA-binding protein EIF1AD OS=Macaca fascicularis GN=EIF1AD PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.7e-16
Identity = 60/160 (37.50%), Postives = 85/160 (53.12%), Query Frame = 1


Query: 13  EHHISSLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMWIKRGSFVVVDES 72
           EH + S  D   I++V+   G+NL EV  AQG++ L   P+K++K++WIKRG F++VD  
Sbjct: 17  EHIVPS--DQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVD-- 76

Query: 73  GKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNENLQAQNNQPVE- 132
                +E G KV   +S VL  + +R LQK   WPE F        N N Q Q   P E 
Sbjct: 77  ----PIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAFSEVAEKHNNRNRQTQPELPAEP 136

Query: 133 ---DEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSD 169
               E +SS+DD    L  NTNR +      ++E ES+ +
Sbjct: 137 QLSGEESSSEDDS--DLFVNTNRRQ----YHESEEESEEE 162

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BLAST of CSPI05G11320 vs. Swiss-Prot
Match: EIF1A_HUMAN (Probable RNA-binding protein EIF1AD OS=Homo sapiens GN=EIF1AD PE=1 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.7e-16
Identity = 60/160 (37.50%), Postives = 85/160 (53.12%), Query Frame = 1


Query: 13  EHHISSLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMWIKRGSFVVVDES 72
           EH + S  D   I++V+   G+NL EV  AQG++ L   P+K++K++WIKRG F++VD  
Sbjct: 17  EHIVPS--DQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVD-- 76

Query: 73  GKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNENLQAQNNQPVE- 132
                +E G KV   +S VL  + +R LQK   WPE F        N N Q Q   P E 
Sbjct: 77  ----PIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAFSEVAEKHNNRNRQTQPELPAEP 136

Query: 133 ---DEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSD 169
               E +SS+DD    L  NTNR +      ++E ES+ +
Sbjct: 137 QLSGEESSSEDDS--DLFVNTNRRQ----YHESEEESEEE 162

[Close]

BLAST of CSPI05G11320 vs. Swiss-Prot
Match: EIF1A_MOUSE (Probable RNA-binding protein EIF1AD OS=Mus musculus GN=Eif1ad PE=1 SV=2)

HSP 1 Score: 85.9 bits (211), Expect = 4.7e-16
Identity = 58/160 (36.25%), Postives = 85/160 (53.12%), Query Frame = 1


Query: 13  EHHISSLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMWIKRGSFVVVDES 72
           EH + S  D   I++V+   G+NL EV  AQG++ L   P+K++K++WIKRG F++VD  
Sbjct: 17  EHMVPS--DHQQIVKVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVD-- 76

Query: 73  GKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNENLQAQNNQPVED 132
                +E G KV   +S VL    +R LQK   WPE F        N N ++Q   P E 
Sbjct: 77  ----PIEEGEKVKAEISFVLCKNHVRSLQKEGHWPEAFSEVAEKQNNMNRESQPELPAEP 136

Query: 133 EV----NSSDDDGLPPLEANTNRAKPLILQPDAESESDSD 169
           ++    +SS+DD    L  NTN  +      ++E ES+ D
Sbjct: 137 QLSGEGSSSEDDS--DLFVNTNHRQ----YHESEEESEED 162

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BLAST of CSPI05G11320 vs. TrEMBL
Match: A0A0A0KM30_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G218810 PE=4 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 1.8e-86
Identity = 167/169 (98.82%), Postives = 168/169 (99.41%), Query Frame = 1


Query: 1   MKGGRKNLQRASEHHISSLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           MKGGRKNLQRASEHHI+SLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLQRASEHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE 120
           IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE
Sbjct: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE 120

Query: 121 NLQAQNNQPVEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS 170
           NLQAQNNQP EDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS
Sbjct: 121 NLQAQNNQPGEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS 169

[Close]

BLAST of CSPI05G11320 vs. TrEMBL
Match: A0A067JCS2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03302 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 4.1e-59
Identity = 122/169 (72.19%), Postives = 141/169 (83.43%), Query Frame = 1


Query: 1   MKGGRKNLQRASEHHISSLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           MKGGRKNL+RA+E H  +LEDG SI QVVS+RGSN+IEVMDA+GEKSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLKRAAEEHNLTLEDGKSIAQVVSLRGSNVIEVMDARGEKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE 120
           IKRGSFVVVDESGK+ ALESGSKVACIVS+VL++EQ+R L+KS EWPEIFK+    D N 
Sbjct: 61  IKRGSFVVVDESGKQKALESGSKVACIVSQVLFYEQVRALRKSLEWPEIFKSTTSDDSNG 120

Query: 121 NLQAQNNQPVEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS 170
           +L    +Q  +DE +SSDDDGLPPLEAN NR KP   Q DAES+S SD+
Sbjct: 121 SLHKSTSQQEDDEFDSSDDDGLPPLEANMNRIKPPEFQSDAESKSGSDT 169

[Close]

BLAST of CSPI05G11320 vs. TrEMBL
Match: A0A151SG33_CAJCA (Putative RNA-binding protein EIF1AD OS=Cajanus cajan GN=KK1_024340 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 5.9e-58
Identity = 119/171 (69.59%), Postives = 140/171 (81.87%), Query Frame = 1


Query: 1   MKGGRKNLQRASEHHISSLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           M+GGRKNL+RA+E    +L+DG SIMQV+S+RGSNLIEVMDA G KSLALFPAKFQ+SMW
Sbjct: 1   MRGGRKNLKRATEEKHITLQDGQSIMQVLSLRGSNLIEVMDASGNKSLALFPAKFQRSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE 120
           IKRGSFVVVDESGK+ ALESGSKVACIVS+VL++EQ+RELQKSPEWPE FK+  + D N 
Sbjct: 61  IKRGSFVVVDESGKEKALESGSKVACIVSQVLFYEQVRELQKSPEWPEKFKSETLDDSNS 120

Query: 121 N--LQAQNNQPVEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS 170
           N    +Q     EDE+  SDDDGLPPLEANTNR +P  L+ D +SES SD+
Sbjct: 121 NERTASQQENEREDEMEGSDDDGLPPLEANTNRMRPFELEADEDSESSSDT 171

[Close]

BLAST of CSPI05G11320 vs. TrEMBL
Match: W9QLB9_9ROSA (Putative RNA-binding protein EIF1AD OS=Morus notabilis GN=L484_009914 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 2.2e-57
Identity = 115/169 (68.05%), Postives = 144/169 (85.21%), Query Frame = 1


Query: 1   MKGGRKNLQRASEHHISSLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           MKGGRKNL+RA+E    +LE+GH+IMQV+S+RGSNLIEVMDAQG+KSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLKRATEEESLTLEEGHNIMQVLSLRGSNLIEVMDAQGKKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE 120
           IKRGSFVVVD+SGK+ A+ESGSKV CIVS+VL++EQ+R LQKSPEWPE+FK+ ++ D N 
Sbjct: 61  IKRGSFVVVDDSGKEKAIESGSKVTCIVSKVLFYEQLRALQKSPEWPEVFKSTVLDDSNG 120

Query: 121 NLQAQNNQPVEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS 170
           +++ + +Q    E  SSD+DGLPPLEANTNR +P  L  +++S SDSDS
Sbjct: 121 SMERETSQ---QEGESSDNDGLPPLEANTNRIRPYELCAESDSGSDSDS 166

[Close]

BLAST of CSPI05G11320 vs. TrEMBL
Match: M5XKZ2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012453mg PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 3.8e-57
Identity = 118/169 (69.82%), Postives = 138/169 (81.66%), Query Frame = 1


Query: 1   MKGGRKNLQRASEHHISSLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           MKGGRKNL+RA E    +L+DGHSIMQV+S+RGSNLIE+MD QGEKSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLKRAVEEESLTLKDGHSIMQVLSLRGSNLIEIMDGQGEKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE 120
           IKRGSFVVVD SGK+  LESGSKV CIVS+VL++EQ+R L+KSPEWPEIFK+ +    N 
Sbjct: 61  IKRGSFVVVDASGKEKVLESGSKVGCIVSQVLFYEQVRVLKKSPEWPEIFKSTVSDGCNA 120

Query: 121 NLQAQNNQPVEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS 170
           +LQ   +Q  E+E  SSDDDGLPPLEAN NR KP+  + D ES SDSD+
Sbjct: 121 SLQGDTSQQEENE--SSDDDGLPPLEANMNRMKPVDWKSDTESNSDSDT 167

[Close]

BLAST of CSPI05G11320 vs. TAIR10
Match: AT2G40780.1 (AT2G40780.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 186.4 bits (472), Expect = 1.4e-47
Identity = 101/175 (57.71%), Postives = 132/175 (75.43%), Query Frame = 1


Query: 1   MKGGRKNLQRASEHHISSLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           M  GR+NL++A+     +LE+  SI QVVS+RGSN IE+MDA+GE SLALFPAKF++SMW
Sbjct: 1   MNRGRRNLKQAASDQDFTLEECQSIAQVVSLRGSNQIEIMDAKGENSLALFPAKFRESMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE 120
           I+RGSFVV+D +GK+ A ESGSKV  IV +VL+FEQ+R LQKSPEWPEIFK+        
Sbjct: 61  IRRGSFVVIDHTGKEKAQESGSKVTSIVCKVLFFEQVRLLQKSPEWPEIFKD------TR 120

Query: 121 NLQAQNNQPVED-----EVNSS-DDDGLPPLEANTNRAKPLILQPDAESESDSDS 170
            + A+ + P+E      EV+SS DDDG+PPL+ANTNR +P  ++ DAE++S SDS
Sbjct: 121 PIPAEKSSPIEQHEDDGEVDSSDDDDGMPPLQANTNRLRPFGVKCDAETDSGSDS 169

[Close]

BLAST of CSPI05G11320 vs. NCBI nr
Match: gi|449457427|ref|XP_004146450.1| (PREDICTED: probable RNA-binding protein EIF1AD [Cucumis sativus])

HSP 1 Score: 326.6 bits (836), Expect = 2.5e-86
Identity = 167/169 (98.82%), Postives = 168/169 (99.41%), Query Frame = 1


Query: 1   MKGGRKNLQRASEHHISSLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           MKGGRKNLQRASEHHI+SLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLQRASEHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE 120
           IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE
Sbjct: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE 120

Query: 121 NLQAQNNQPVEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS 170
           NLQAQNNQP EDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS
Sbjct: 121 NLQAQNNQPGEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS 169

[Close]

BLAST of CSPI05G11320 vs. NCBI nr
Match: gi|659114116|ref|XP_008456911.1| (PREDICTED: probable RNA-binding protein EIF1AD [Cucumis melo])

HSP 1 Score: 312.4 bits (799), Expect = 4.9e-82
Identity = 160/169 (94.67%), Postives = 163/169 (96.45%), Query Frame = 1


Query: 1   MKGGRKNLQRASEHHISSLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           MKGGRKNLQRASEHHI+SLEDGHSIM VVSIRGSNLIEVMDAQG KSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLQRASEHHIASLEDGHSIMLVVSIRGSNLIEVMDAQGGKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE 120
           IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQ+RELQKSP WPEIFKNAIVGDRNE
Sbjct: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPGWPEIFKNAIVGDRNE 120

Query: 121 NLQAQNNQPVEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS 170
           NL+AQNNQ  EDEVNSSDDDGLPPLEANTNRAKPLILQPD ESESDSDS
Sbjct: 121 NLRAQNNQSEEDEVNSSDDDGLPPLEANTNRAKPLILQPDGESESDSDS 169

[Close]

BLAST of CSPI05G11320 vs. NCBI nr
Match: gi|802778340|ref|XP_012091122.1| (PREDICTED: probable RNA-binding protein EIF1AD [Jatropha curcas])

HSP 1 Score: 235.7 bits (600), Expect = 5.9e-59
Identity = 122/169 (72.19%), Postives = 141/169 (83.43%), Query Frame = 1


Query: 1   MKGGRKNLQRASEHHISSLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           MKGGRKNL+RA+E H  +LEDG SI QVVS+RGSN+IEVMDA+GEKSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLKRAAEEHNLTLEDGKSIAQVVSLRGSNVIEVMDARGEKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE 120
           IKRGSFVVVDESGK+ ALESGSKVACIVS+VL++EQ+R L+KS EWPEIFK+    D N 
Sbjct: 61  IKRGSFVVVDESGKQKALESGSKVACIVSQVLFYEQVRALRKSLEWPEIFKSTTSDDSNG 120

Query: 121 NLQAQNNQPVEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS 170
           +L    +Q  +DE +SSDDDGLPPLEAN NR KP   Q DAES+S SD+
Sbjct: 121 SLHKSTSQQEDDEFDSSDDDGLPPLEANMNRIKPPEFQSDAESKSGSDT 169

[Close]

BLAST of CSPI05G11320 vs. NCBI nr
Match: gi|645256904|ref|XP_008234164.1| (PREDICTED: probable RNA-binding protein EIF1AD [Prunus mume])

HSP 1 Score: 234.6 bits (597), Expect = 1.3e-58
Identity = 118/169 (69.82%), Postives = 141/169 (83.43%), Query Frame = 1


Query: 1   MKGGRKNLQRASEHHISSLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           MKGGRKNL+RA E    +L+DGHSIMQV+S+RGSNLIE+MD QGEKSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLKRAVEEDSLTLKDGHSIMQVLSLRGSNLIEIMDGQGEKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE 120
           IKRGSFVVVD SGK+  LESGSKV CIVS+VL++EQ+R L+KSPEWPEIFK+ +    + 
Sbjct: 61  IKRGSFVVVDASGKEKVLESGSKVGCIVSQVLFYEQVRVLKKSPEWPEIFKSTVSDGCHA 120

Query: 121 NLQAQNNQPVEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS 170
           +LQ   +Q  E+E++SSDDDGLPPLEANTNR KP+  + D ES SDSD+
Sbjct: 121 SLQGDTSQQEENELDSSDDDGLPPLEANTNRMKPVDWKSDTESNSDSDT 169

[Close]

BLAST of CSPI05G11320 vs. NCBI nr
Match: gi|1012342573|gb|KYP53766.1| (putative RNA-binding protein EIF1AD [Cajanus cajan])

HSP 1 Score: 231.9 bits (590), Expect = 8.5e-58
Identity = 119/171 (69.59%), Postives = 140/171 (81.87%), Query Frame = 1


Query: 1   MKGGRKNLQRASEHHISSLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           M+GGRKNL+RA+E    +L+DG SIMQV+S+RGSNLIEVMDA G KSLALFPAKFQ+SMW
Sbjct: 1   MRGGRKNLKRATEEKHITLQDGQSIMQVLSLRGSNLIEVMDASGNKSLALFPAKFQRSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE 120
           IKRGSFVVVDESGK+ ALESGSKVACIVS+VL++EQ+RELQKSPEWPE FK+  + D N 
Sbjct: 61  IKRGSFVVVDESGKEKALESGSKVACIVSQVLFYEQVRELQKSPEWPEKFKSETLDDSNS 120

Query: 121 N--LQAQNNQPVEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS 170
           N    +Q     EDE+  SDDDGLPPLEANTNR +P  L+ D +SES SD+
Sbjct: 121 NERTASQQENEREDEMEGSDDDGLPPLEANTNRMRPFELEADEDSESSSDT 171

The following BLAST results are available for this feature:

BLAST of CSPI05G11320 vs. Swiss-Prot


Match Name	E-value	Identity	Description
EIF1A_DANRE	3.8e-18	37.34	Probable RNA-binding protein EIF1AD OS=Danio rerio GN=eif1ad PE=2 SV=1	[more]
EIF1A_BOVIN	2.1e-16	37.89	Probable RNA-binding protein EIF1AD OS=Bos taurus GN=EIF1AD PE=2 SV=1	[more]
EIF1A_MACFA	2.7e-16	37.50	Probable RNA-binding protein EIF1AD OS=Macaca fascicularis GN=EIF1AD PE=2 SV=1	[more]
EIF1A_HUMAN	2.7e-16	37.50	Probable RNA-binding protein EIF1AD OS=Homo sapiens GN=EIF1AD PE=1 SV=1	[more]
EIF1A_MOUSE	4.7e-16	36.25	Probable RNA-binding protein EIF1AD OS=Mus musculus GN=Eif1ad PE=1 SV=2	[more]

BLAST of CSPI05G11320 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KM30_CUCSA	1.8e-86	98.82	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G218810 PE=4 SV=1	[more]
A0A067JCS2_JATCU	4.1e-59	72.19	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03302 PE=4 SV=1	[more]
A0A151SG33_CAJCA	5.9e-58	69.59	Putative RNA-binding protein EIF1AD OS=Cajanus cajan GN=KK1_024340 PE=4 SV=1	[more]
W9QLB9_9ROSA	2.2e-57	68.05	Putative RNA-binding protein EIF1AD OS=Morus notabilis GN=L484_009914 PE=4 SV=1	[more]
M5XKZ2_PRUPE	3.8e-57	69.82	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012453mg PE=4 SV=1	[more]

BLAST of CSPI05G11320 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G40780.1	1.4e-47	57.71	Nucleic acid-binding, OB-fold-like protein	[more]

BLAST of CSPI05G11320 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449457427\|ref\|XP_004146450.1\|	2.5e-86	98.82	PREDICTED: probable RNA-binding protein EIF1AD [Cucumis sativus]	[more]
gi\|659114116\|ref\|XP_008456911.1\|	4.9e-82	94.67	PREDICTED: probable RNA-binding protein EIF1AD [Cucumis melo]	[more]
gi\|802778340\|ref\|XP_012091122.1\|	5.9e-59	72.19	PREDICTED: probable RNA-binding protein EIF1AD [Jatropha curcas]	[more]
gi\|645256904\|ref\|XP_008234164.1\|	1.3e-58	69.82	PREDICTED: probable RNA-binding protein EIF1AD [Prunus mume]	[more]
gi\|1012342573\|gb\|KYP53766.1\|	8.5e-58	69.59	putative RNA-binding protein EIF1AD [Cajanus cajan]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001253	TIF_eIF-1A
IPR006196	RNA-binding_domain_S1_IF1
IPR012340	NA-bd_OB-fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0003743	translation initiation factor activity
GO:0003723	RNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006413	translational initiation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006626	protein targeting to mitochondrion
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G11320.1	CSPI05G11320.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001253	Translation initiation factor 1A (eIF-1A)	SMART	SM00652	eIF1neu4	coord: 18..107 score: 4.1
IPR006196	RNA-binding domain, S1, IF1 type	PFAM	PF01176	eIF-1a	coord: 23..72 score: 1.1
IPR006196	RNA-binding domain, S1, IF1 type	PROFILE	PS50832	S1_IF1_TYPE	coord: 12..92 score: 9
IPR012340	Nucleic acid-binding, OB-fold	GENE3D	G3DSA:2.40.50.140		coord: 5..139 score: 7.1
IPR012340	Nucleic acid-binding, OB-fold	unknown	SSF50249	Nucleic acid-binding proteins	coord: 14..138 score: 1.09
None	No IPR available	PANTHER	PTHR21641	TRANSLATION INITIATION FACTOR-RELATED	coord: 1..169 score: 2.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI05G11320	Cla007268	Watermelon (97103) v1	cpiwmB395
CSPI05G11320	Csa5G218810	Cucumber (Chinese Long) v2	cpicuB240
CSPI05G11320	MELO3C020110	Melon (DHL92) v3.5.1	cpimeB370
CSPI05G11320	ClCG07G004830	Watermelon (Charleston Gray)	cpiwcgB420
CSPI05G11320	Lsi04G010410	Bottle gourd (USVL1VR-Ls)	cpilsiB373
CSPI05G11320	MELO3C020110.2	Melon (DHL92) v3.6.1	cpimedB351
CSPI05G11320	CsaV3_5G010740	Cucumber (Chinese Long) v3	cpicucB285
CSPI05G11320	Cla97C07G133250	Watermelon (97103) v2	cpiwmbB412
CSPI05G11320	Bhi07G000437	Wax gourd	cpiwgoB517
CSPI05G11320	Cucsa.144150	Cucumber (Gy14) v1	cgycpiB212
CSPI05G11320	CmaCh04G010800	Cucurbita maxima (Rimu)	cmacpiB756
CSPI05G11320	CmoCh04G011450	Cucurbita moschata (Rifu)	cmocpiB746
CSPI05G11320	Cp4.1LG01g11540	Cucurbita pepo (Zucchini)	cpecpiB437
CSPI05G11320	CsGy5G008590	Cucumber (Gy14) v2	cgybcpiB226
CSPI05G11320	Carg00182	Silver-seed gourd	carcpiB0706

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI05G11320	Cucurbita maxima (Rimu)	cmacpiB757
CSPI05G11320	Cucurbita moschata (Rifu)	cmocpiB747
CSPI05G11320	Cucurbita pepo (Zucchini)	cpecpiB438
CSPI05G11320	Silver-seed gourd	carcpiB0947