CsGy5G008590 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy5G008590
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	probable RNA-binding protein EIF1AD
Location	Chr5 : 6553797 .. 6556918 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAGAACGTTTCACTTTTCTCAAAATTAGGTGTCCATGATTCCTAGATGATTGTGAGAATGCACTATTCTATTTTTACTTCTTATTTCAATGAGAACTTCTAGAACCCCAACTAATCTTAATAGAAGCCTTTGGATAAACCCTAACTCTCTCATCTCACTTCAGTTGCCGCACCACCGTAGGTCGCCACTGGCTGGAGGCTCCGGCGCTCTAATCTCATCTCGTCACTTCTTAGAATTACGGTTCTCTTTCAAAGTATGAAAGGTGGGAGAAAGAACTTACAGCGGGCATCGGAGCATCATATCGCAAGCCTCGAAGATGGTCATAGTATTATGCAGGTTGTCTCAATTCGTGGTTCCAATCTAATTGAGGTATCCTTCTATTTCATCGATCATGCTCGCTCTCTCTAATTTTGTCAACTTTTTACTCCACAATCTTGTGCTTTTCCTATTGCCTATTGTGTTAATTGCGTTAATCAACCTGAATGAACAACTCCTTTAATTGCAGTTAATCATCCACTAATGTTTTGTTTTCGAAAGTAAAAATAGTAGGTTTCAATTCTTGCTGTTTGATTGTGTGGTTACATTGTGTATTTGAGATATTTGCTAACGATTTAAATAAATGATTCTGATATGCTTGTTGTATTGCAATTTCTTTGTACAAGTCATCCTTTTAGTTAAGCGTTCATATGGGGGAAACCATAACCTCTGCAGTTTCTCTATTTCGGGTGCAATAATTTGTTTGTTTCTTTATTTTTTAGGAAACCAAGATGTGTATTATTTGTCAATTATATTCAGTGGGCTGCTTTGCTTTATTTTGTATTTTGGACAATCTTTAAAATTTTTCTTCATCCTCTCTAGGTAATGGATGCACAAGGTGAGAAATCACTGGCATTATTTCCTGCCAAGTTTCAAAAGAGTATGTGGATAAAACGAGGTATGTTCTACTAACCATTCTACTCAACTCATTATTCCTGTTGCATTACATTGCCTTCCGAAGTAAGCAAGGTTCATTAATTCTCACTAAAAAAGCTGTTTCTTATTAAAAAGAAAAATCTGCAAAATCAAGAGATCTTCTACCATAAAAAATAAATGATAGAAGAAAAACATAAGATCCCATTTTGCATTTGCCTCGCTCTTTATGTCAAGGTTTTACGTGGTATGAGCGTCTGGAAACTATGCTATTTCATTTTCAGTGTTGTAGGAATTTATAAACTGTGGCCGTTGACTGTTAGATATGGTGTTTTTTCCCCTTTTCAGTTAGTAGGGTTTAGGGTTGAAAACAAACAAAGAACTTCACAAAACAGCAGCCAATATTTAAATCTTTAGGATTTTAGAATTCTATTCAATCTTATCTATCTTTTAGTTTCTGTACAAGTCTCATTTCTACTCATCTATGTTTTGCTTGTGTAAATAAACCATGTATAATATATATACATATATTTTTATATATAGTGCGTCTCACAAAAAGAATCTTGTGCCTTCTTGTGCACCTTGCGCCTAGGCTCCAGAGTTTCATTGTGTCTTTGTGCGTCTCGGGCATCTCCAATGAAACATGAAATCTAATAGGTCTTTGACCCATATAAATTAATTTTTCAGTTTTTGAAAATATTTTAGGAATCTGTTAGACACAAAGTTAAAAGTTGACTTGGTAGATACTTTATAAACATTTTAGACATTTTTAAAGTTCCTTGACATTTTTGGTATCGACTTGAAAGCCTAAGGACTAAACTTATAATTTAACCCAACTATAATTATTCCCCAATTAAAATCACTACTCTAACATAACTTTAGATCCTGCTTTTATTGATTGCTTTTGAAGTGTCTGCTTTGCCATCATTGTAGGGAGTTTCGTTGTAGTTGATGAAAGTGGAAAGAAGAATGCTCTTGAATCTGGAAGCAAGGTGGCATGCATTGTTTCTCGAGTTCTATATTTTGAACAAATTCGTGAGCTTCAAAAATCCCCAGAATGGTATGTTTTATTATATCAAATTTCAACCTATTCACGTTTAAATGGATTAGGCATTGCTTGATAAATTTTTGAATTCCATTAATCGATCAAACAAATATGAGGGTCTTGCTTATGATCGAGCAGATGTCCCTTCACAAATATTTAGAAGCAAGAATTAACTTTGTTCTTAACTGTGTGAAAACGGTGAAGCAGATGGTAAATTTATTTATATGATTGAAATTAGATAAAGATAACAATCAAATAGATGTGCCACGCTATTAATTCTATCGCGTTCTTGCATGACAAAAATATCACTGTTAGTAGTTTATGTCGTGCCCTTGTGTCATTGCTTTTTTCCTCTACTGTGCGTGCAGGCTGAAATTGGAAATAAACCTACCACTTTAAACCACCTAGGCTGGACTAATGGTCAATATTAATCATACAAGTAATGAAATTAGAGAAAATAGGTTCAATTCATAACCGTCACCTACTTAAAATGTAATATCTTATGAACTATCTTGTCAATAGAAAAATGAACTAGAGTTGGATTGTTTTATGAAAATAGCTAAAAGTGTATACAAGTTGATTTGGACACACTCGGATATCCATAAGAAAAACACCAATTAAATTGAGTTGGACATATTTGTTTGAAAATTTCTTACCCCAGCCCAGCTTGTTTTTCTTAAACTGGTGGGTTAATATTCCACACCTTTTTGTACCAATGAATTGCAGGCCAGAAATCTTCAAGAATGCAATTGTTGGAGATCGAAACGAAAATCTTCAAGCACAAAATAATCAACCAGGGGAGGATGAGGTCAATTCAAGTGATGATGATGGCCTTCCCCCTCTAGAAGCCAACACGAACAGAGCTAAACCGTTAATATTACAACCGGATGCAGAATCAGAGTCTGATTCAGATTCTTAACTTGTATATTAATTTTAACTCTACACTTTTTTATTTAATTACCATGAGCATTCATTTTGATTGTTTGTACTACAATTAAAAATTTTAATTTTGTAATTAACAGAAATTTCTGAGTACCTATTTTTGAATATGATGGTATAAGAAATCTATGCAGCTTAGAATATGGAACGCATAAAATAGTCAATGAACATATTTCTCAAAAGAAAAACAAAACTAGAAATGAACAAAGCTCAATGGAACTTTTTTT

mRNA sequence

AATAGAACGTTTCACTTTTCTCAAAATTAGGTGTCCATGATTCCTAGATGATTGTGAGAATGCACTATTCTATTTTTACTTCTTATTTCAATGAGAACTTCTAGAACCCCAACTAATCTTAATAGAAGCCTTTGGATAAACCCTAACTCTCTCATCTCACTTCAGTTGCCGCACCACCGTAGGTCGCCACTGGCTGGAGGCTCCGGCGCTCTAATCTCATCTCGTCACTTCTTAGAATTACGGTTCTCTTTCAAAGTATGAAAGGTGGGAGAAAGAACTTACAGCGGGCATCGGAGCATCATATCGCAAGCCTCGAAGATGGTCATAGTATTATGCAGGTTGTCTCAATTCGTGGTTCCAATCTAATTGAGGTAATGGATGCACAAGGTGAGAAATCACTGGCATTATTTCCTGCCAAGTTTCAAAAGAGTATGTGGATAAAACGAGGGAGTTTCGTTGTAGTTGATGAAAGTGGAAAGAAGAATGCTCTTGAATCTGGAAGCAAGGTGGCATGCATTGTTTCTCGAGTTCTATATTTTGAACAAATTCGTGAGCTTCAAAAATCCCCAGAATGGCCAGAAATCTTCAAGAATGCAATTGTTGGAGATCGAAACGAAAATCTTCAAGCACAAAATAATCAACCAGGGGAGGATGAGGTCAATTCAAGTGATGATGATGGCCTTCCCCCTCTAGAAGCCAACACGAACAGAGCTAAACCGTTAATATTACAACCGGATGCAGAATCAGAGTCTGATTCAGATTCTTAACTTGTATATTAATTTTAACTCTACACTTTTTTATTTAATTACCATGAGCATTCATTTTGATTGTTTGTACTACAATTAAAAATTTTAATTTTGTAATTAACAGAAATTTCTGAGTACCTATTTTTGAATATGATGGTATAAGAAATCTATGCAGCTTAGAATATGGAACGCATAAAATAGTCAATGAACATATTTCTCAAAAGAAAAACAAAACTAGAAATGAACAAAGCTCAATGGAACTTTTTTT

Coding sequence (CDS)

ATGAAAGGTGGGAGAAAGAACTTACAGCGGGCATCGGAGCATCATATCGCAAGCCTCGAAGATGGTCATAGTATTATGCAGGTTGTCTCAATTCGTGGTTCCAATCTAATTGAGGTAATGGATGCACAAGGTGAGAAATCACTGGCATTATTTCCTGCCAAGTTTCAAAAGAGTATGTGGATAAAACGAGGGAGTTTCGTTGTAGTTGATGAAAGTGGAAAGAAGAATGCTCTTGAATCTGGAAGCAAGGTGGCATGCATTGTTTCTCGAGTTCTATATTTTGAACAAATTCGTGAGCTTCAAAAATCCCCAGAATGGCCAGAAATCTTCAAGAATGCAATTGTTGGAGATCGAAACGAAAATCTTCAAGCACAAAATAATCAACCAGGGGAGGATGAGGTCAATTCAAGTGATGATGATGGCCTTCCCCCTCTAGAAGCCAACACGAACAGAGCTAAACCGTTAATATTACAACCGGATGCAGAATCAGAGTCTGATTCAGATTCTTAA

Protein sequence

MKGGRKNLQRASEHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMWIKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNENLQAQNNQPGEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS

Homology

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BLAST of CsGy5G008590 vs. NCBI nr
Match: XP_004146450.1 (PREDICTED: probable RNA-binding protein EIF1AD [Cucumis sativus] >KGN50715.1 hypothetical protein Csa_5G218810 [Cucumis sativus])

HSP 1 Score: 330.1 bits (845), Expect = 4.4e-87
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0


Query: 1   MKGGRKNLQRASEHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           MKGGRKNLQRASEHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLQRASEHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE 120
           IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE
Sbjct: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE 120

Query: 121 NLQAQNNQPGEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS 170
           NLQAQNNQPGEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS
Sbjct: 121 NLQAQNNQPGEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS 169

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BLAST of CsGy5G008590 vs. NCBI nr
Match: XP_008456911.1 (PREDICTED: probable RNA-binding protein EIF1AD [Cucumis melo] >XP_008456912.1 PREDICTED: probable RNA-binding protein EIF1AD [Cucumis melo])

HSP 1 Score: 312.4 bits (799), Expect = 9.5e-82
Identity = 161/169 (95.27%), Postives = 163/169 (96.45%), Query Frame = 0


Query: 1   MKGGRKNLQRASEHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           MKGGRKNLQRASEHHIASLEDGHSIM VVSIRGSNLIEVMDAQG KSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLQRASEHHIASLEDGHSIMLVVSIRGSNLIEVMDAQGGKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE 120
           IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQ+RELQKSP WPEIFKNAIVGDRNE
Sbjct: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPGWPEIFKNAIVGDRNE 120

Query: 121 NLQAQNNQPGEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS 170
           NL+AQNNQ  EDEVNSSDDDGLPPLEANTNRAKPLILQPD ESESDSDS
Sbjct: 121 NLRAQNNQSEEDEVNSSDDDGLPPLEANTNRAKPLILQPDGESESDSDS 169

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BLAST of CsGy5G008590 vs. NCBI nr
Match: XP_023547328.1 (probable RNA-binding protein EIF1AD [Cucurbita pepo subsp. pepo])

HSP 1 Score: 302.8 bits (774), Expect = 7.5e-79
Identity = 153/169 (90.53%), Postives = 161/169 (95.27%), Query Frame = 0


Query: 1   MKGGRKNLQRASEHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           MKGGRKNLQRAS  HI  LEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLQRASNQHIVGLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE 120
           IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQ+RELQKSPEWPEIFKNAI GD+NE
Sbjct: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAITGDQNE 120

Query: 121 NLQAQNNQPGEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS 170
           NLQA+NN+  EDE++SSDDDGLPPLEANTNRAKPLILQP+ E+ESDSDS
Sbjct: 121 NLQAENNRQEEDEIDSSDDDGLPPLEANTNRAKPLILQPEEETESDSDS 169

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BLAST of CsGy5G008590 vs. NCBI nr
Match: XP_022942753.1 (probable RNA-binding protein EIF1AD [Cucurbita moschata])

HSP 1 Score: 300.1 bits (767), Expect = 4.9e-78
Identity = 151/169 (89.35%), Postives = 160/169 (94.67%), Query Frame = 0


Query: 1   MKGGRKNLQRASEHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           MKGGRKNLQRAS  HI  LEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLQRASNQHIVGLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE 120
           IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQ+R+LQKSPEWPEIFKNAI GD+NE
Sbjct: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRQLQKSPEWPEIFKNAITGDQNE 120

Query: 121 NLQAQNNQPGEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS 170
           NLQ +NN+  EDE++SSDDDGLPPLEANTNRAKPLILQP+ E+ESDSDS
Sbjct: 121 NLQTENNRQEEDEIDSSDDDGLPPLEANTNRAKPLILQPEEETESDSDS 169

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BLAST of CsGy5G008590 vs. NCBI nr
Match: XP_022146732.1 (probable RNA-binding protein EIF1AD [Momordica charantia])

HSP 1 Score: 294.3 bits (752), Expect = 2.7e-76
Identity = 149/167 (89.22%), Postives = 157/167 (94.01%), Query Frame = 0


Query: 1   MKGGRKNLQRASEHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           MKGGRKNLQRASE HI SLEDGH IMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLQRASEQHIISLEDGHGIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE 120
           IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQ+RELQK PEWPE+FKNAIVGDRNE
Sbjct: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKWPEWPEVFKNAIVGDRNE 120

Query: 121 NLQAQNNQPGEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDS 168
           NLQ +N+Q  +DEVNSS+DD LPPLEANTNRAKP +LQ DAES+SDS
Sbjct: 121 NLQVKNDQQEQDEVNSSEDDDLPPLEANTNRAKPFVLQSDAESDSDS 167

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BLAST of CsGy5G008590 vs. TAIR10
Match: AT2G40780.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 184.5 bits (467), Expect = 5.4e-47
Identity = 99/171 (57.89%), Postives = 133/171 (77.78%), Query Frame = 0


Query: 1   MKGGRKNLQRASEHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           M  GR+NL++A+     +LE+  SI QVVS+RGSN IE+MDA+GE SLALFPAKF++SMW
Sbjct: 1   MNRGRRNLKQAASDQDFTLEECQSIAQVVSLRGSNQIEIMDAKGENSLALFPAKFRESMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNA--IVGDR 120
           I+RGSFVV+D +GK+ A ESGSKV  IV +VL+FEQ+R LQKSPEWPEIFK+   I  ++
Sbjct: 61  IRRGSFVVIDHTGKEKAQESGSKVTSIVCKVLFFEQVRLLQKSPEWPEIFKDTRPIPAEK 120

Query: 121 NENLQAQNNQPGEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS 170
           +  ++ Q+   GE + +S DDDG+PPL+ANTNR +P  ++ DAE++S SDS
Sbjct: 121 SSPIE-QHEDDGEVD-SSDDDDGMPPLQANTNRLRPFGVKCDAETDSGSDS 169

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BLAST of CsGy5G008590 vs. TAIR10
Match: AT2G40910.1 (F-box and associated interaction domains-containing protein)

HSP 1 Score: 46.2 bits (108), Expect = 2.3e-05
Identity = 25/59 (42.37%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 1  MKGGRKNLQRASEHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSM 60
          MK  R++L++A+E   +  E+  S+ QVVS+R S+ +++MD +G+ SLAL PAK    M
Sbjct: 1  MKRRRRDLKQAAE---SEQEECQSVPQVVSLRDSDQLQIMDEKGDNSLALLPAKLPMRM 56

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BLAST of CsGy5G008590 vs. Swiss-Prot
Match: sp|Q8N9N8|EIF1A_HUMAN (Probable RNA-binding protein EIF1AD OS=Homo sapiens OX=9606 GN=EIF1AD PE=1 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.0e-15
Identity = 47/123 (38.21%), Postives = 68/123 (55.28%), Query Frame = 0


Query: 13  EHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMWIKRGSFVVVDES 72
           EH + S  D   I++V+   G+NL EV  AQG++ L   P+K++K++WIKRG F++VD  
Sbjct: 17  EHIVPS--DQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVD-- 76

Query: 73  GKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNENLQAQNNQPGED 132
                +E G KV   +S VL  + +R LQK   WPE F        N N Q Q   P E 
Sbjct: 77  ----PIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAFSEVAEKHNNRNRQTQPELPAEP 131

Query: 133 EVN 136
           +++
Sbjct: 137 QLS 131

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BLAST of CsGy5G008590 vs. Swiss-Prot
Match: sp|Q4R354|EIF1A_MACFA (Probable RNA-binding protein EIF1AD OS=Macaca fascicularis OX=9541 GN=EIF1AD PE=2 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.0e-15
Identity = 47/123 (38.21%), Postives = 68/123 (55.28%), Query Frame = 0


Query: 13  EHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMWIKRGSFVVVDES 72
           EH + S  D   I++V+   G+NL EV  AQG++ L   P+K++K++WIKRG F++VD  
Sbjct: 17  EHIVPS--DQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVD-- 76

Query: 73  GKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNENLQAQNNQPGED 132
                +E G KV   +S VL  + +R LQK   WPE F        N N Q Q   P E 
Sbjct: 77  ----PIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAFSEVAEKHNNRNRQTQPELPAEP 131

Query: 133 EVN 136
           +++
Sbjct: 137 QLS 131

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BLAST of CsGy5G008590 vs. Swiss-Prot
Match: sp|Q58CY2|EIF1A_BOVIN (Probable RNA-binding protein EIF1AD OS=Bos taurus OX=9913 GN=EIF1AD PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.2e-15
Identity = 48/122 (39.34%), Postives = 68/122 (55.74%), Query Frame = 0


Query: 13  EHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMWIKRGSFVVVDES 72
           EH + S  D   I++V+   G+NL EV  AQG++ L   P+K++K++WIKRG F++VD  
Sbjct: 17  EHMVPS--DQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVD-- 76

Query: 73  GKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE-NLQAQNNQPGE 132
                +E G KV   +S VL  + +R LQK   WPE F      D N+ N Q Q   P E
Sbjct: 77  ----PIEEGEKVKAEISFVLCKDHVRSLQKDGHWPEAFSQVTEKDNNDRNRQTQPELPAE 130

Query: 133 DE 134
            +
Sbjct: 137 PQ 130

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BLAST of CsGy5G008590 vs. Swiss-Prot
Match: sp|Q3THJ3|EIF1A_MOUSE (Probable RNA-binding protein EIF1AD OS=Mus musculus OX=10090 GN=Eif1ad PE=1 SV=2)

HSP 1 Score: 82.4 bits (202), Expect = 5.2e-15
Identity = 46/123 (37.40%), Postives = 68/123 (55.28%), Query Frame = 0


Query: 13  EHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMWIKRGSFVVVDES 72
           EH + S  D   I++V+   G+NL EV  AQG++ L   P+K++K++WIKRG F++VD  
Sbjct: 17  EHMVPS--DHQQIVKVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVD-- 76

Query: 73  GKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNENLQAQNNQPGED 132
                +E G KV   +S VL    +R LQK   WPE F        N N ++Q   P E 
Sbjct: 77  ----PIEEGEKVKAEISFVLCKNHVRSLQKEGHWPEAFSEVAEKQNNMNRESQPELPAEP 131

Query: 133 EVN 136
           +++
Sbjct: 137 QLS 131

[Close]

BLAST of CsGy5G008590 vs. Swiss-Prot
Match: sp|Q5RKI6|EIF1A_RAT (Probable RNA-binding protein EIF1AD OS=Rattus norvegicus OX=10116 GN=Eif1ad PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.2e-15
Identity = 46/123 (37.40%), Postives = 68/123 (55.28%), Query Frame = 0


Query: 13  EHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMWIKRGSFVVVDES 72
           EH + S  D   I++V+   G+NL EV  AQG++ L   P+K++K++WIKRG F++VD  
Sbjct: 17  EHMVPS--DQQQIVKVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVD-- 76

Query: 73  GKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNENLQAQNNQPGED 132
                +E G KV   +S VL    +R LQK   WPE F        N N ++Q   P E 
Sbjct: 77  ----PIEEGEKVKAEISFVLCKNHVRSLQKEGHWPEAFSEVAEKQNNVNRESQPELPAEP 131

Query: 133 EVN 136
           +++
Sbjct: 137 QLS 131

[Close]

BLAST of CsGy5G008590 vs. TrEMBL
Match: tr|A0A0A0KM30|A0A0A0KM30_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G218810 PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 2.9e-87
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0


Query: 1   MKGGRKNLQRASEHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           MKGGRKNLQRASEHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLQRASEHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE 120
           IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE
Sbjct: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE 120

Query: 121 NLQAQNNQPGEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS 170
           NLQAQNNQPGEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS
Sbjct: 121 NLQAQNNQPGEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS 169

[Close]

BLAST of CsGy5G008590 vs. TrEMBL
Match: tr|A0A1S3C3W3|A0A1S3C3W3_CUCME (probable RNA-binding protein EIF1AD OS=Cucumis melo OX=3656 GN=LOC103496721 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 6.3e-82
Identity = 161/169 (95.27%), Postives = 163/169 (96.45%), Query Frame = 0


Query: 1   MKGGRKNLQRASEHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           MKGGRKNLQRASEHHIASLEDGHSIM VVSIRGSNLIEVMDAQG KSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLQRASEHHIASLEDGHSIMLVVSIRGSNLIEVMDAQGGKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE 120
           IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQ+RELQKSP WPEIFKNAIVGDRNE
Sbjct: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPGWPEIFKNAIVGDRNE 120

Query: 121 NLQAQNNQPGEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS 170
           NL+AQNNQ  EDEVNSSDDDGLPPLEANTNRAKPLILQPD ESESDSDS
Sbjct: 121 NLRAQNNQSEEDEVNSSDDDGLPPLEANTNRAKPLILQPDGESESDSDS 169

[Close]

BLAST of CsGy5G008590 vs. TrEMBL
Match: tr|A0A2N9FN72|A0A2N9FN72_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16412 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 3.4e-59
Identity = 120/168 (71.43%), Postives = 140/168 (83.33%), Query Frame = 0


Query: 1   MKGGRKNLQRASEHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           MKGGRKNL+RA+E    SL+DGH+IMQVVS+RGSNLIEVM AQGEKSLALFPAKFQKSMW
Sbjct: 2   MKGGRKNLKRAAEEDKFSLQDGHTIMQVVSLRGSNLIEVMGAQGEKSLALFPAKFQKSMW 61

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE 120
           IKRGSFVVVD SGK+ ALESGSKVACIVS+VL++EQ+R LQKSPEWPE+FK+ I+ D NE
Sbjct: 62  IKRGSFVVVDISGKEKALESGSKVACIVSQVLFYEQVRSLQKSPEWPEVFKSTILDDSNE 121

Query: 121 NLQAQNNQPGEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSD 169
           +L  Q +Q        SDD+GLPP+EANTNR +P  +Q D ES+S SD
Sbjct: 122 SLHKQTSQEXXXXXXXSDDEGLPPIEANTNRIRPFEVQSDVESDSSSD 169

[Close]

BLAST of CsGy5G008590 vs. TrEMBL
Match: tr|A0A2P5BLX6|A0A2P5BLX6_PARAD (Translation initiation factor 1A (eIF-1A) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_227570 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 4.9e-58
Identity = 115/169 (68.05%), Postives = 142/169 (84.02%), Query Frame = 0


Query: 1   MKGGRKNLQRASEHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           MKGGRKNL+R  E    +LEDGH+I QV+S+RGSNLIEVMD QGEKSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLKREKEEGSLNLEDGHTIRQVLSLRGSNLIEVMDLQGEKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE 120
           IKRGSFVVVD+SGK+ ALESGSKV CIVS+VL++EQ+R LQKSP+WPE+F++A++ D N 
Sbjct: 61  IKRGSFVVVDDSGKEKALESGSKVTCIVSKVLFYEQVRTLQKSPKWPEVFRSAVLDDSNG 120

Query: 121 NLQAQNNQPGEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS 170
           +++ +  Q  E+E+ S DDDGLPPLEANTNR +P  L  +++S SDSDS
Sbjct: 121 SIERETCQQEEEELESRDDDGLPPLEANTNRIRPFELHVESDSGSDSDS 169

[Close]

BLAST of CsGy5G008590 vs. TrEMBL
Match: tr|A0A2I4G9E2|A0A2I4G9E2_9ROSI (probable RNA-binding protein EIF1AD OS=Juglans regia OX=51240 GN=LOC109005875 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 2.4e-57
Identity = 116/168 (69.05%), Postives = 143/168 (85.12%), Query Frame = 0


Query: 1   MKGGRKNLQRASEHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60
           MKGGRKNL+RA+E    +L+DG +IMQV+S+RGSNLIEVMD QG+KSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLKRAAEDEKFNLQDGQTIMQVLSLRGSNLIEVMDGQGDKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE 120
           I+RGSFVVVD SGK+ ALESGSKVAC+VS+VL++EQ+R LQKSPEWPEIFK+  + D N 
Sbjct: 61  IRRGSFVVVDISGKEKALESGSKVACLVSQVLFYEQVRPLQKSPEWPEIFKSTHLEDSNG 120

Query: 121 NLQAQNNQPGEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSD 169
           +L+ Q +Q  E+E+ SSD++GLPP+E NTNR KP+ L  DAES+S SD
Sbjct: 121 SLRGQTSQQEENELESSDEEGLPPIEVNTNRIKPVELLSDAESDSGSD 168

The following BLAST results are available for this feature:

BLAST of CsGy5G008590 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146450.1	4.4e-87	100.00	PREDICTED: probable RNA-binding protein EIF1AD [Cucumis sativus] >KGN50715.1 hyp...	[more]
XP_008456911.1	9.5e-82	95.27	PREDICTED: probable RNA-binding protein EIF1AD [Cucumis melo] >XP_008456912.1 PR...	[more]
XP_023547328.1	7.5e-79	90.53	probable RNA-binding protein EIF1AD [Cucurbita pepo subsp. pepo]	[more]
XP_022942753.1	4.9e-78	89.35	probable RNA-binding protein EIF1AD [Cucurbita moschata]	[more]
XP_022146732.1	2.7e-76	89.22	probable RNA-binding protein EIF1AD [Momordica charantia]	[more]

BLAST of CsGy5G008590 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G40780.1	5.4e-47	57.89	Nucleic acid-binding, OB-fold-like protein	[more]
AT2G40910.1	2.3e-05	42.37	F-box and associated interaction domains-containing protein	[more]

BLAST of CsGy5G008590 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8N9N8\|EIF1A_HUMAN	4.0e-15	38.21	Probable RNA-binding protein EIF1AD OS=Homo sapiens OX=9606 GN=EIF1AD PE=1 SV=1	[more]
sp\|Q4R354\|EIF1A_MACFA	4.0e-15	38.21	Probable RNA-binding protein EIF1AD OS=Macaca fascicularis OX=9541 GN=EIF1AD PE=...	[more]
sp\|Q58CY2\|EIF1A_BOVIN	5.2e-15	39.34	Probable RNA-binding protein EIF1AD OS=Bos taurus OX=9913 GN=EIF1AD PE=2 SV=1	[more]
sp\|Q3THJ3\|EIF1A_MOUSE	5.2e-15	37.40	Probable RNA-binding protein EIF1AD OS=Mus musculus OX=10090 GN=Eif1ad PE=1 SV=2	[more]
sp\|Q5RKI6\|EIF1A_RAT	5.2e-15	37.40	Probable RNA-binding protein EIF1AD OS=Rattus norvegicus OX=10116 GN=Eif1ad PE=1...	[more]

BLAST of CsGy5G008590 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KM30\|A0A0A0KM30_CUCSA	2.9e-87	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G218810 PE=4 SV=1	[more]
tr\|A0A1S3C3W3\|A0A1S3C3W3_CUCME	6.3e-82	95.27	probable RNA-binding protein EIF1AD OS=Cucumis melo OX=3656 GN=LOC103496721 PE=4...	[more]
tr\|A0A2N9FN72\|A0A2N9FN72_FAGSY	3.4e-59	71.43	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16412 PE=4 SV=1	[more]
tr\|A0A2P5BLX6\|A0A2P5BLX6_PARAD	4.9e-58	68.05	Translation initiation factor 1A (eIF-1A) OS=Parasponia andersonii OX=3476 GN=Pa...	[more]
tr\|A0A2I4G9E2\|A0A2I4G9E2_9ROSI	2.4e-57	69.05	probable RNA-binding protein EIF1AD OS=Juglans regia OX=51240 GN=LOC109005875 PE...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0003743	translation initiation factor activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006413	translational initiation

Vocabulary: **INTERPRO**
Term	Definition
IPR012340	NA-bd_OB-fold
IPR039294	EIF1AD
IPR006196	RNA-binding_domain_S1_IF1
IPR001253	TIF_eIF-1A

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
biological_process	GO:0006446	regulation of translational initiation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G008590.1	CsGy5G008590.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001253	Translation initiation factor 1A (eIF-1A)	SMART	SM00652	eIF1neu4	coord: 18..107 e-value: 4.1E-29 score: 112.7
None	No IPR available	GENE3D	G3DSA:2.40.50.140		coord: 1..142 e-value: 1.2E-26 score: 94.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 121..169
IPR006196	RNA-binding domain, S1, IF1 type	PFAM	PF01176	eIF-1a	coord: 23..72 e-value: 1.1E-10 score: 41.0
IPR006196	RNA-binding domain, S1, IF1 type	PROSITE	PS50832	S1_IF1_TYPE	coord: 12..92 score: 9.581
IPR039294	Probable RNA-binding protein EIF1AD	PANTHER	PTHR21641	TRANSLATION INITIATION FACTOR-RELATED	coord: 1..168
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	SSF50249	Nucleic acid-binding proteins	coord: 9..140

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy5G008590	Cla007268	Watermelon (97103) v1	cgybwmB359
CsGy5G008590	Csa5G218810	Cucumber (Chinese Long) v2	cgybcuB224
CsGy5G008590	MELO3C020110	Melon (DHL92) v3.5.1	cgybmeB320
CsGy5G008590	ClCG07G004830	Watermelon (Charleston Gray)	cgybwcgB369
CsGy5G008590	CSPI05G11320	Wild cucumber (PI 183967)	cgybcpiB226
CsGy5G008590	CmaCh04G010800	Cucurbita maxima (Rimu)	cgybcmaB673
CsGy5G008590	CmoCh04G011450	Cucurbita moschata (Rifu)	cgybcmoB651
CsGy5G008590	Lsi04G010410	Bottle gourd (USVL1VR-Ls)	cgyblsiB338
CsGy5G008590	Cp4.1LG01g11540	Cucurbita pepo (Zucchini)	cgybcpeB646
CsGy5G008590	MELO3C020110.2	Melon (DHL92) v3.6.1	cgybmedB311
CsGy5G008590	CsaV3_5G010740	Cucumber (Chinese Long) v3	cgybcucB232
CsGy5G008590	Cla97C07G133250	Watermelon (97103) v2	cgybwmbB375
CsGy5G008590	Bhi07G000437	Wax gourd	cgybwgoB487
CsGy5G008590	Carg00182	Silver-seed gourd	carcgybB0670

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy5G008590	Cucumber (Chinese Long) v3	cgybcucB242
CsGy5G008590	Watermelon (97103) v2	cgybwmbB347
CsGy5G008590	Wax gourd	cgybwgoB469
CsGy5G008590	Cucumber (Gy14) v2	cgybcgybB145
CsGy5G008590	Cucurbita maxima (Rimu)	cgybcmaB674
CsGy5G008590	Cucurbita moschata (Rifu)	cgybcmoB652
CsGy5G008590	Cucurbita pepo (Zucchini)	cgybcpeB647
CsGy5G008590	Silver-seed gourd	carcgybB0898